Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19220 AT5G20730 AT5G20730 AT5G20730 |
| fragaria_vesca | FvH4_1g09150 FvH4_1g09150 FvH4_1g09150 |
| malus_domestica | MD02G1096700.v1.1 MD15G1221400.v1.1 |
| prunus_persica | Prupe.7G194200_v2.0.a1 Prupe.7G194200_v2.0.a1 |
| pyrus_communis | pycom02g07670 |
| rosa_chinensis | RchiOBHm_Chr2g0095551 |
| rosa_laevigata | RLG00000016578 |
| rosa_multiflora | Rmu_sc0005382.1_g000007 Rmu_sc0038699.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00146200 |
| rosa_rugosa | Rorug02G0052300 |
| rosa_samantha | Rh2AG100100 Rh2BG101600 Rh2CG103700 Rh2DG101000 |
| rosa_wichuraiana | Rw2G007600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 641 |
| AatII | GACGTC | 1 cut(s) | 3165 |
| Acc16I | TGCGCA | 1 cut(s) | 285 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2474, 2822 |
| AccI | GTMKAC | 2 cut(s) | 851, 2987 |
| AccII | CGCG | 3 cut(s) | 164, 1346, 3208 |
| AclWI | GGATC | 9 cut(s) | 254, 962, 1373, 1933, 2664, 3227, 3233, 3302, 3343 |
| AcoI | YGGCCR | 2 cut(s) | 1285, 3089 |
| AcsI | RAATTY | 3 cut(s) | 374, 2803, 3320 |
| AcuI | CTGAAG | 8 cut(s) | 281, 933, 989, 1196, 1808, 2556, 2915, 2976 |
| AcyI | GRCGYC | 2 cut(s) | 1406, 3162 |
| AfaI | GTAC | 7 cut(s) | 412, 432, 866, 943, 1231, 2977, 3405 |
| AflII | CTTAAG | 1 cut(s) | 350 |
| AgeI | ACCGGT | 4 cut(s) | 950, 1072, 2470, 3492 |
| AgsI | TTSAA | 9 cut(s) | 44, 171, 1070, 1543, 1982, 2012, 2063, 2535, 2946 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1165 |
| AjiI | CACGTC | 1 cut(s) | 680 |
| AjnI | CCWGG | 6 cut(s) | 1135, 1240, 1312, 2146, 2196, 2840 |
| AleI | CACNNNNGTG | 1 cut(s) | 84 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 615, 647 |
| AlwI | GGATC | 9 cut(s) | 254, 962, 1373, 1933, 2664, 3227, 3233, 3302, 3343 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1031, 1516, 1597 |
| Ama87I | CYCGRG | 2 cut(s) | 805, 2902 |
| AoxI | GGCC | 7 cut(s) | 92, 1040, 1285, 2205, 2600, 2824, 3089 |
| ApoI | RAATTY | 3 cut(s) | 374, 2803, 3320 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3377, 3409 |
| AsiGI | ACCGGT | 4 cut(s) | 950, 1072, 2470, 3492 |
| AspLEI | GCGC | 6 cut(s) | 286, 658, 1351, 1867, 3208, 3210 |
| AspS9I | GGNCC | 4 cut(s) | 92, 1041, 2206, 2600 |
| AsuHPI | GGTGA | 7 cut(s) | 781, 1046, 2015, 2186, 2452, 2846, 3446 |
| AsuII | TTCGAA | 1 cut(s) | 3041 |
| AsuNHI | GCTAGC | 1 cut(s) | 2036 |
| AvaI | CYCGRG | 2 cut(s) | 805, 2902 |
| AxyI | CCTNAGG | 1 cut(s) | 2451 |
| BaeGI | GKGCMC | 1 cut(s) | 3033 |
| BalI | TGGCCA | 1 cut(s) | 3091 |
| BauI | CACGAG | 1 cut(s) | 2696 |
| BbsI | GAAGAC | 1 cut(s) | 2067 |
| BbvCI | CCTCAGC | 3 cut(s) | 1482, 3191, 3363 |
| BccI | CCATC | 8 cut(s) | 641, 972, 1008, 1333, 1554, 2334, 2504, 2771 |
| BceAI | ACGGC | 2 cut(s) | 411, 1300 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 721, 755 |
| BciT130I | CCWGG | 6 cut(s) | 1137, 1242, 1314, 2148, 2198, 2842 |
| BfaI | CTAG | 6 cut(s) | 2037, 2043, 2721, 2741, 3050, 3203 |
| BfmI | CTRYAG | 5 cut(s) | 579, 756, 1517, 1598, 1700 |
| BfoI | RGCGCY | 1 cut(s) | 1352 |
| BfrI | CTTAAG | 1 cut(s) | 350 |
| BglII | AGATCT | 2 cut(s) | 2562, 2926 |
| BmcAI | AGTACT | 2 cut(s) | 412, 1231 |
| Bme1390I | CCNGG | 6 cut(s) | 1137, 1242, 1314, 2148, 2198, 2842 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1165 |
| BmeT110I | CYCGRG | 2 cut(s) | 805, 2902 |
| BmgBI | CACGTC | 1 cut(s) | 680 |
| BmgT120I | GGNCC | 4 cut(s) | 92, 1041, 2206, 2600 |
| BmiI | GGNNCC | 3 cut(s) | 837, 1830, 2814 |
| BmrFI | CCNGG | 6 cut(s) | 1137, 1242, 1314, 2148, 2198, 2842 |
| BmrI | ACTGGG | 1 cut(s) | 1038 |
| BmtI | GCTAGC | 1 cut(s) | 2040 |
| BmuI | ACTGGG | 1 cut(s) | 1038 |
| BoxI | GACNNNNGTC | 1 cut(s) | 345 |
| BpiI | GAAGAC | 1 cut(s) | 2067 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2434, 2466 |
| BpmI | CTGGAG | 5 cut(s) | 96, 607, 642, 1661, 3087 |
| Bpu10I | CCTNAGC | 4 cut(s) | 507, 1482, 3191, 3363 |
| Bpu14I | TTCGAA | 1 cut(s) | 3041 |
| BpuEI | CTTGAG | 3 cut(s) | 126, 855, 2355 |
| BsaBI | GATNNNNATC | 1 cut(s) | 966 |
| BsaHI | GRCGYC | 2 cut(s) | 1406, 3162 |
| BsaI | GGTCTC | 1 cut(s) | 2156 |
| BsaJI | CCNNGG | 5 cut(s) | 806, 880, 1190, 1344, 3311 |
| BsaWI | WCCGGW | 4 cut(s) | 950, 1072, 2470, 3492 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 615, 645, 1659, 1689, 2853, 2883 |
| Bse118I | RCCGGY | 5 cut(s) | 950, 1072, 2470, 3398, 3492 |
| Bse1I | ACTGG | 5 cut(s) | 302, 971, 1044, 3260, 3407 |
| Bse21I | CCTNAGG | 1 cut(s) | 2451 |
| Bse3DI | GCAATG | 4 cut(s) | 326, 1191, 1763, 3451 |
| Bse8I | GATNNNNATC | 1 cut(s) | 966 |
| BseBI | CCWGG | 6 cut(s) | 1137, 1242, 1314, 2148, 2198, 2842 |
| BseDI | CCNNGG | 5 cut(s) | 806, 880, 1190, 1344, 3311 |
| BseGI | GGATG | 7 cut(s) | 277, 1019, 1024, 1269, 1780, 2078, 3288 |
| BseJI | GATNNNNATC | 1 cut(s) | 966 |
| BseMI | GCAATG | 4 cut(s) | 326, 1191, 1763, 3451 |
| BseNI | ACTGG | 5 cut(s) | 302, 971, 1044, 3260, 3407 |
| BsePI | GCGCGC | 1 cut(s) | 3206 |
| BseRI | GAGGAG | 6 cut(s) | 1092, 1417, 1525, 2529, 2970, 3284 |
| BseSI | GKGCMC | 1 cut(s) | 3033 |
| BseYI | CCCAGC | 1 cut(s) | 89 |
| BsgI | GTGCAG | 4 cut(s) | 684, 1155, 1290, 1337 |
| Bsh1236I | CGCG | 3 cut(s) | 164, 1346, 3208 |
| BshFI | GGCC | 7 cut(s) | 94, 1042, 1287, 2207, 2602, 2826, 3091 |
| BshTI | ACCGGT | 4 cut(s) | 950, 1072, 2470, 3492 |
| BsiHKCI | CYCGRG | 2 cut(s) | 805, 2902 |
| BsiSI | CCGG | 5 cut(s) | 951, 1073, 2471, 3399, 3493 |
| BslFI | GGGAC | 3 cut(s) | 1076, 1486, 3005 |
| BsmBI | CGTCTC | 1 cut(s) | 260 |
| BsmFI | GGGAC | 3 cut(s) | 1076, 1486, 3005 |
| BsmI | GAATGC | 3 cut(s) | 259, 1146, 3114 |
| BsnI | GGCC | 7 cut(s) | 94, 1042, 1287, 2207, 2602, 2826, 3091 |
| Bso31I | GGTCTC | 1 cut(s) | 2156 |
| BsoBI | CYCGRG | 2 cut(s) | 805, 2902 |
| Bsp119I | TTCGAA | 1 cut(s) | 3041 |
| Bsp1286I | GDGCHC | 1 cut(s) | 3033 |
| Bsp19I | CCATGG | 2 cut(s) | 1190, 3311 |
| BspANI | GGCC | 7 cut(s) | 94, 1042, 1287, 2207, 2602, 2826, 3091 |
| BspFNI | CGCG | 3 cut(s) | 164, 1346, 3208 |
| BspHI | TCATGA | 2 cut(s) | 517, 3277 |
| BspLI | GGNNCC | 3 cut(s) | 837, 1830, 2814 |
| BspMAI | CTGCAG | 4 cut(s) | 760, 1521, 1602, 1704 |
| BspOI | GCTAGC | 1 cut(s) | 2040 |
| BspPI | GGATC | 9 cut(s) | 254, 962, 1373, 1933, 2664, 3227, 3233, 3302, 3343 |
| BspT104I | TTCGAA | 1 cut(s) | 3041 |
| BspTI | CTTAAG | 1 cut(s) | 350 |
| BspTNI | GGTCTC | 1 cut(s) | 2156 |
| BsrDI | GCAATG | 4 cut(s) | 326, 1191, 1763, 3451 |
| BsrFI | RCCGGY | 5 cut(s) | 950, 1072, 2470, 3398, 3492 |
| BsrI | ACTGG | 5 cut(s) | 302, 971, 1044, 3260, 3407 |
| BssAI | RCCGGY | 5 cut(s) | 950, 1072, 2470, 3398, 3492 |
| BssECI | CCNNGG | 5 cut(s) | 806, 880, 1190, 1344, 3311 |
| BssHII | GCGCGC | 1 cut(s) | 3206 |
| BssNAI | GTATAC | 1 cut(s) | 852 |
| BssNI | GRCGYC | 2 cut(s) | 1406, 3162 |
| BssSI | CACGAG | 1 cut(s) | 2696 |
| BssT1I | CCWWGG | 2 cut(s) | 1190, 3311 |
| Bst1107I | GTATAC | 1 cut(s) | 852 |
| Bst2BI | CACGAG | 1 cut(s) | 2696 |
| Bst2UI | CCWGG | 6 cut(s) | 1137, 1242, 1314, 2148, 2198, 2842 |
| Bst6I | CTCTTC | 4 cut(s) | 300, 1172, 2536, 2572 |
| BstACI | GRCGYC | 2 cut(s) | 1406, 3162 |
| BstAFI | CTTAAG | 1 cut(s) | 350 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 332, 764, 1528, 2356 |
| BstBI | TTCGAA | 1 cut(s) | 3041 |
| BstDSI | CCRYGG | 3 cut(s) | 1190, 1344, 3311 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 42, 114 |
| BstF5I | GGATG | 7 cut(s) | 277, 1019, 1024, 1269, 1780, 2078, 3288 |
| BstFNI | CGCG | 3 cut(s) | 164, 1346, 3208 |
| BstH2I | RGCGCY | 1 cut(s) | 1352 |
| BstHHI | GCGC | 6 cut(s) | 286, 658, 1351, 1867, 3208, 3210 |
| BstNI | CCWGG | 6 cut(s) | 1137, 1242, 1314, 2148, 2198, 2842 |
| BstNSI | RCATGY | 4 cut(s) | 235, 736, 2941, 3214 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 345 |
| BstSCI | CCNGG | 6 cut(s) | 1135, 1240, 1312, 2146, 2196, 2840 |
| BstSFI | CTRYAG | 5 cut(s) | 579, 756, 1517, 1598, 1700 |
| BstSLI | GKGCMC | 1 cut(s) | 3033 |
| BstUI | CGCG | 3 cut(s) | 164, 1346, 3208 |
| BstV2I | GAAGAC | 1 cut(s) | 2067 |
| BstX2I | RGATCY | 5 cut(s) | 2562, 2656, 2926, 3238, 3348 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 978 |
| BstYI | RGATCY | 5 cut(s) | 2562, 2656, 2926, 3238, 3348 |
| BstZ17I | GTATAC | 1 cut(s) | 852 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2451 |
| BsuRI | GGCC | 7 cut(s) | 94, 1042, 1287, 2207, 2602, 2826, 3091 |
| BtgI | CCRYGG | 3 cut(s) | 1190, 1344, 3311 |
| BtgZI | GCGATG | 2 cut(s) | 875, 3318 |
| BtrI | CACGTC | 1 cut(s) | 680 |
| BtsCI | GGATG | 7 cut(s) | 277, 1019, 1024, 1269, 1780, 2078, 3288 |
| BtsI | GCAGTG | 1 cut(s) | 1945 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1031, 1516, 1597 |
| CciI | TCATGA | 2 cut(s) | 517, 3277 |
| CfoI | GCGC | 6 cut(s) | 286, 658, 1351, 1867, 3208, 3210 |
| Cfr10I | RCCGGY | 5 cut(s) | 950, 1072, 2470, 3398, 3492 |
| Cfr13I | GGNCC | 4 cut(s) | 92, 1041, 2206, 2600 |
| Cfr42I | CCGCGG | 1 cut(s) | 1347 |
| CseI | GACGC | 1 cut(s) | 1414 |
| Csp6I | GTAC | 7 cut(s) | 411, 431, 865, 942, 1230, 2976, 3404 |
| CspAI | ACCGGT | 4 cut(s) | 950, 1072, 2470, 3492 |
| CviQI | GTAC | 7 cut(s) | 411, 431, 865, 942, 1230, 2976, 3404 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1165 |
| EaeI | YGGCCR | 2 cut(s) | 1285, 3089 |
| Eam1104I | CTCTTC | 4 cut(s) | 300, 1172, 2536, 2572 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1165 |
| EarI | CTCTTC | 4 cut(s) | 300, 1172, 2536, 2572 |
| EciI | GGCGGA | 1 cut(s) | 1012 |
| Eco130I | CCWWGG | 2 cut(s) | 1190, 3311 |
| Eco31I | GGTCTC | 1 cut(s) | 2156 |
| Eco57I | CTGAAG | 8 cut(s) | 281, 933, 989, 1196, 1808, 2556, 2915, 2976 |
| Eco81I | CCTNAGG | 1 cut(s) | 2451 |
| Eco88I | CYCGRG | 2 cut(s) | 805, 2902 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 42, 114 |
| EcoRI | GAATTC | 1 cut(s) | 3320 |
| EcoRII | CCWGG | 6 cut(s) | 1135, 1240, 1312, 2146, 2196, 2840 |
| EcoT14I | CCWWGG | 2 cut(s) | 1190, 3311 |
| EcoT22I | ATGCAT | 2 cut(s) | 233, 328 |
| ErhI | CCWWGG | 2 cut(s) | 1190, 3311 |
| Esp3I | CGTCTC | 1 cut(s) | 260 |
| FaqI | GGGAC | 3 cut(s) | 1076, 1486, 3005 |
| FauI | CCCGC | 2 cut(s) | 2591, 3040 |
| FauNDI | CATATG | 2 cut(s) | 227, 1094 |
| FblI | GTMKAC | 2 cut(s) | 851, 2987 |
| FokI | GGATG | 7 cut(s) | 284, 1026, 1031, 1276, 1767, 2065, 3275 |
| FspBI | CTAG | 6 cut(s) | 2037, 2043, 2721, 2741, 3050, 3203 |
| FspI | TGCGCA | 1 cut(s) | 285 |
| GlaI | GCGC | 6 cut(s) | 285, 657, 1350, 1866, 3207, 3209 |
| GsaI | CCCAGC | 1 cut(s) | 93 |
| GsuI | CTGGAG | 5 cut(s) | 96, 607, 642, 1661, 3087 |
| HaeII | RGCGCY | 1 cut(s) | 1352 |
| HaeIII | GGCC | 7 cut(s) | 94, 1042, 1287, 2207, 2602, 2826, 3091 |
| HapII | CCGG | 5 cut(s) | 951, 1073, 2471, 3399, 3493 |
| HgaI | GACGC | 1 cut(s) | 1414 |
| HhaI | GCGC | 6 cut(s) | 286, 658, 1351, 1867, 3208, 3210 |
| Hin1I | GRCGYC | 2 cut(s) | 1406, 3162 |
| Hin6I | GCGC | 6 cut(s) | 284, 656, 1349, 1865, 3206, 3208 |
| HinP1I | GCGC | 6 cut(s) | 284, 656, 1349, 1865, 3206, 3208 |
| HincII | GTYRAC | 4 cut(s) | 557, 1856, 3058, 3166 |
| HindII | GTYRAC | 4 cut(s) | 557, 1856, 3058, 3166 |
| HindIII | AAGCTT | 3 cut(s) | 1975, 2490, 3420 |
| HpaII | CCGG | 5 cut(s) | 951, 1073, 2471, 3399, 3493 |
| HphI | GGTGA | 7 cut(s) | 781, 1046, 2015, 2186, 2452, 2846, 3446 |
| Hpy99I | CGWCG | 5 cut(s) | 441, 933, 2419, 2542, 3302 |
| HpyAV | CCTTC | 7 cut(s) | 21, 38, 225, 1233, 2535, 2553, 3218 |
| HpyCH4IV | ACGT | 5 cut(s) | 679, 1496, 2417, 2537, 3162 |
| HpySE526I | ACGT | 5 cut(s) | 679, 1496, 2417, 2537, 3162 |
| Hsp92I | GRCGYC | 2 cut(s) | 1406, 3162 |
| HspAI | GCGC | 6 cut(s) | 284, 656, 1349, 1865, 3206, 3208 |
| KspI | CCGCGG | 1 cut(s) | 1347 |
| LmnI | GCTCC | 8 cut(s) | 13, 240, 496, 823, 1680, 1967, 2818, 2861 |
| MaeI | CTAG | 6 cut(s) | 2037, 2043, 2721, 2741, 3050, 3203 |
| MaeII | ACGT | 5 cut(s) | 679, 1496, 2417, 2537, 3162 |
| MfeI | CAATTG | 4 cut(s) | 1523, 1613, 1670, 2330 |
| MflI | RGATCY | 5 cut(s) | 2562, 2656, 2926, 3238, 3348 |
| MhlI | GDGCHC | 1 cut(s) | 3033 |
| MlsI | TGGCCA | 1 cut(s) | 3091 |
| MluNI | TGGCCA | 1 cut(s) | 3091 |
| MlyI | GAGTC | 8 cut(s) | 286, 620, 1031, 1175, 1729, 2236, 2909, 3094 |
| MmeI | TCCRAC | 2 cut(s) | 1138, 2840 |
| Mox20I | TGGCCA | 1 cut(s) | 3091 |
| Mph1103I | ATGCAT | 2 cut(s) | 233, 328 |
| MscI | TGGCCA | 1 cut(s) | 3091 |
| MseI | TTAA | 7 cut(s) | 351, 1079, 1443, 1968, 2726, 3345, 3489 |
| MslI | CAYNNNNRTG | 6 cut(s) | 84, 230, 768, 2031, 3282, 3465 |
| Msp20I | TGGCCA | 1 cut(s) | 3091 |
| MspA1I | CMGCKG | 8 cut(s) | 755, 1028, 1346, 1516, 2260, 2356, 2996, 3362 |
| MspCI | CTTAAG | 1 cut(s) | 350 |
| MspI | CCGG | 5 cut(s) | 951, 1073, 2471, 3399, 3493 |
| MspR9I | CCNGG | 6 cut(s) | 1137, 1242, 1314, 2148, 2198, 2842 |
| MunI | CAATTG | 4 cut(s) | 1523, 1613, 1670, 2330 |
| Mva1269I | GAATGC | 3 cut(s) | 259, 1146, 3114 |
| MvaI | CCWGG | 6 cut(s) | 1137, 1242, 1314, 2148, 2198, 2842 |
| MvnI | CGCG | 3 cut(s) | 164, 1346, 3208 |
| NcoI | CCATGG | 2 cut(s) | 1190, 3311 |
| NdeI | CATATG | 2 cut(s) | 227, 1094 |
| NheI | GCTAGC | 1 cut(s) | 2036 |
| NlaIV | GGNNCC | 3 cut(s) | 837, 1830, 2814 |
| NmuCI | GTSAC | 4 cut(s) | 146, 401, 2959, 3434 |
| NsbI | TGCGCA | 1 cut(s) | 285 |
| NsiI | ATGCAT | 2 cut(s) | 233, 328 |
| NspI | RCATGY | 4 cut(s) | 235, 736, 2941, 3214 |
| NspV | TTCGAA | 1 cut(s) | 3041 |
| OliI | CACNNNNGTG | 1 cut(s) | 84 |
| PaeI | GCATGC | 2 cut(s) | 235, 736 |
| PaeR7I | CTCGAG | 1 cut(s) | 2902 |
| PagI | TCATGA | 2 cut(s) | 517, 3277 |
| PauI | GCGCGC | 1 cut(s) | 3206 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2900 |
| PctI | GAATGC | 3 cut(s) | 259, 1146, 3114 |
| PfeI | GAWTC | 6 cut(s) | 208, 1000, 1453, 1837, 2164, 2837 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2474, 2822 |
| PfoI | TCCNGGA | 1 cut(s) | 2840 |
| PinAI | ACCGGT | 4 cut(s) | 950, 1072, 2470, 3492 |
| PleI | GAGTC | 8 cut(s) | 286, 620, 1030, 1174, 1729, 2235, 2909, 3094 |
| PpsI | GAGTC | 8 cut(s) | 286, 620, 1030, 1174, 1729, 2235, 2909, 3094 |
| PshAI | GACNNNNGTC | 1 cut(s) | 345 |
| PsiI | TTATAA | 1 cut(s) | 641 |
| Psp6I | CCWGG | 6 cut(s) | 1135, 1240, 1312, 2146, 2196, 2840 |
| PspFI | CCCAGC | 1 cut(s) | 89 |
| PspGI | CCWGG | 6 cut(s) | 1135, 1240, 1312, 2146, 2196, 2840 |
| PspN4I | GGNNCC | 3 cut(s) | 837, 1830, 2814 |
| PspPI | GGNCC | 4 cut(s) | 92, 1041, 2206, 2600 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3318, 3350 |
| PstI | CTGCAG | 4 cut(s) | 760, 1521, 1602, 1704 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1031, 1516, 1597 |
| PsuI | RGATCY | 5 cut(s) | 2562, 2656, 2926, 3238, 3348 |
| PteI | GCGCGC | 1 cut(s) | 3206 |
| PvuII | CAGCTG | 7 cut(s) | 755, 1028, 1516, 2260, 2356, 2996, 3362 |
| RsaI | GTAC | 7 cut(s) | 412, 432, 866, 943, 1231, 2977, 3405 |
| RsaNI | GTAC | 7 cut(s) | 411, 431, 865, 942, 1230, 2976, 3404 |
| RseI | CAYNNNNRTG | 6 cut(s) | 84, 230, 768, 2031, 3282, 3465 |
| SacII | CCGCGG | 1 cut(s) | 1347 |
| SaqAI | TTAA | 7 cut(s) | 351, 1079, 1443, 1968, 2726, 3345, 3489 |
| Sau96I | GGNCC | 4 cut(s) | 92, 1041, 2206, 2600 |
| ScaI | AGTACT | 2 cut(s) | 412, 1231 |
| SchI | GAGTC | 8 cut(s) | 286, 620, 1031, 1175, 1729, 2236, 2909, 3094 |
| ScrFI | CCNGG | 6 cut(s) | 1137, 1242, 1314, 2148, 2198, 2842 |
| SduI | GDGCHC | 1 cut(s) | 3033 |
| SfcI | CTRYAG | 5 cut(s) | 579, 756, 1517, 1598, 1700 |
| Sfr274I | CTCGAG | 1 cut(s) | 2902 |
| Sfr303I | CCGCGG | 1 cut(s) | 1347 |
| SfuI | TTCGAA | 1 cut(s) | 3041 |
| SgrBI | CCGCGG | 1 cut(s) | 1347 |
| SlaI | CTCGAG | 1 cut(s) | 2902 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 84, 230, 768, 2031, 3282, 3465 |
| SmlI | CTYRAG | 5 cut(s) | 141, 350, 870, 2370, 2902 |
| SmoI | CTYRAG | 5 cut(s) | 141, 350, 870, 2370, 2902 |
| SphI | GCATGC | 2 cut(s) | 235, 736 |
| SspMI | CTAG | 6 cut(s) | 2037, 2043, 2721, 2741, 3050, 3203 |
| StyD4I | CCNGG | 6 cut(s) | 1135, 1240, 1312, 2146, 2196, 2840 |
| StyI | CCWWGG | 2 cut(s) | 1190, 3311 |
| TaiI | ACGT | 5 cut(s) | 682, 1499, 2420, 2540, 3165 |
| TatI | WGTACW | 2 cut(s) | 410, 1229 |
| TauI | GCSGC | 8 cut(s) | 167, 1349, 1371, 1411, 2104, 2245, 2308, 2683 |
| TfiI | GAWTC | 6 cut(s) | 208, 1000, 1453, 1837, 2164, 2837 |
| Tru1I | TTAA | 7 cut(s) | 351, 1079, 1443, 1968, 2726, 3345, 3489 |
| Tru9I | TTAA | 7 cut(s) | 351, 1079, 1443, 1968, 2726, 3345, 3489 |
| TseFI | GTSAC | 4 cut(s) | 146, 401, 2959, 3434 |
| Tsp45I | GTSAC | 4 cut(s) | 146, 401, 2959, 3434 |
| TspGWI | ACGGA | 3 cut(s) | 284, 1944, 2376 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2474, 2822 |
| Vha464I | CTTAAG | 1 cut(s) | 350 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 42, 114 |
| XapI | RAATTY | 3 cut(s) | 374, 2803, 3320 |
| XceI | RCATGY | 4 cut(s) | 235, 736, 2941, 3214 |
| XhoI | CTCGAG | 1 cut(s) | 2902 |
| XmiI | GTMKAC | 2 cut(s) | 851, 2987 |
| XspI | CTAG | 6 cut(s) | 2037, 2043, 2721, 2741, 3050, 3203 |
| ZraI | GACGTC | 1 cut(s) | 3163 |
| ZrmI | AGTACT | 2 cut(s) | 412, 1231 |
| Zsp2I | ATGCAT | 2 cut(s) | 233, 328 |