Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008380

Physical Location & Seq

Genomic Coordinates Forward (+)

4875089 .. 4881833

Gene Structure 6745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09150.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3318 bp

ATGCAAAAGGAGACGGATTTCATACCTAACTACCCCAATCTTCCTTCGAAATTGATATGCATGCTTCACAATGTCACATTACATGCTGATACCGAAACAGATGAGGTGTATGCACAGATGACTCTCCAACCAGTAAACAAATATGATAAGGAAGCAATACTGGCGTCTGACATGGGCCTCAAGCAAAGCAGGCAACCTTCTGAGTTTTTCTGCAAAACTCTTACAGCTAGTGACACAAGTACTCACGGTGGCTTTTCTGTACCTCGTCGTGCAGCTGAAAAGATCTTTCCAGCTCTAGATTTTTCGATGCAACCCCCAGCACAGGAGCTGGTAGCAAAAGATTTGCATGATAGTGCATGGACATTCAGACATATTTATCGCGGCCAGCCAAAAAGGCACCTGCTGACTACTGGTTGGAGTGTTTTCGTTAGCACAAAAAGACTCTTTGCTGGAGATGCTGTTCTTTTTATAAGAGATGAAAAATCTCAGCTTCTCTTGGGTATAAGGCGTGCTAATAGGCAGCAACCAGCTCTCTCTTCATCAGTCATTTCCAGCGATAGCATGCACATTGGAATTCTTGCAGCTGCAGCTCATGCTGCTGCAAATAACAGTGCATTTACCATATTTTACAACCCGAGGGCAAGCCCTTCTGAGTTTGTGGTACCTTTAGCCAAGTATAATAAAGCAATGTATACGCAAGTCTCACTTGGCATGCGATTCAGAATGATGTTTGAGACTGAAGAGTCAGGAGTTCGCAGATACATGGGTACAATCACTGGCATTAGCGAGCTGGATTCTGTACGTTGGAAAAATTCTCAATGGCGCAATCTTCAGGTTGGTTGGGATGAATCAACAGCTGGTGATCGGCCTAGCCGAGTTTCAATTTGGGAAATTGAGCCTGTTGTAACTCCTTTCTACATCTGCCCACCTCCATTCTTTAGACCCAAGTTTCCCAAACAACCAGGGATGCCAGATGATGAATCTGACATAGAGAATGCTTTCAAGAGAGCCATGCCATGGCTTGGAGATGAGTTTGGCATGAAAAATTCCACCAGCTCGATTTTCCCTGGGTTGAGTTTAGTGCAGTGGATGAATATGCAACAAAATAATCAGTTTTCTGCCGCTCAGTCTGGATTTTTCCCGTCCATGGTTCCCCCAACTACCCTGCATAACGGAATTGATGATCCATCCAAGTTGCTGAATTTTCAAGCTCCTGGTCTTACTGCACCGAGCCAGTTAAATAAAGCAGCTCTACAAAATCAAGTTGGTCAAGTGCAACAGCCAACTGTGACATGGCCCCAACAGCAGCAGCTGCAGCAACTAATGCAGAATCCTATGAACCAACAGCAGCAAAATCACTCGCAACAGCAACAGCTACAACAATTAATGCATACTCCTTTGAACCAACAGCAGCAAAATCTTCCCCAACAGCAGCAGCTGCAGCAATTAATGCAGACTCCTGCGAACCAACAGCTGCAAAATTACTCTCAGCAGCAACAGCAGCAACGGGAGCAACAACAACGTCAAGAACCTCAAGGCCATCAACCGCTGCAGAACCTTCATCAGATACATCAGCAGCAACCACAACGGCAACAGCCTCAACAACAACAGTTAGGTCAACCGACTTCTGTAAGTAATGGTCTCATTACTCCAAACCAAATCCCAAGCCAAAATTCACAGCAACCAATGATGTTCACTCAGCTTCAGCAACAGCATTCACTAACAAGCAGTGCCCAATCCCAGCAAACAGTCCACACTCCTAATAAGAATTCATTTCAGTTGGCAGCCGGCACACAGGACTCACAAATTCAGCAACAATTGGAACCACAACCAAGCCTGTTACAAAGGCAGCAGCAGGCACAGCTACAACAGTCCCCATTGCAGTTGTTGCAACAGTCGCAGAAAGCACAGCAGCAGCCACAAGTACAACCATCGCCACAACAGGGCTTGTCTGAGCAACAAATTCACTTACAGTTGCTTCAGAAATTGCAGCAGCAGCAGCAGCAGCACCAACAACAGCAACAGCAACAGCAACAATTATTCTCTCCATCAAGCCCACTTTTGCAGCAGCAAATGCTACAGCAGCAGCTGGCCCATCAACAAAACCAGCAATTGCAACAGTTGCAGTTGCCTCTGTCCCAGCATCATCAGCAACAGTTAAGCAGTAATGGCTTCGCAGCAGACAAACTTCTCAACAGCAACAACTTCTCTGCTTCACCACTGTTGCAGCCTCAGCATGTTTCATCTATTCAACAACAGAACCAGCACAAGCAAGTTACAGCAATCAGAAGCCATTCCAATCTTACAGAAGGGGATGGTCCATCATGTTCAACGTCCCCTTCTACAAATAATTGCCACGTTTCCCCATCAAACCTACTGAACAGGAATCAGCAAGGAACAGCCATGTTGATAGCGGATCCAGTTCCGGAACCTTCTAGTAACTTGGTTCATGAATTCCAGAGCAAGTCTGATATCCGAATCAAACATGAGTTGCCCATCTCAAAAGGACCAGATCAAATTAAATATAAAGGTACCATCACTGATCAGTTGGAAGCTTCCTCTTCCGGAACTTCATACTGTCTGGATGCTAGCACAATGCAGCAGAACTACGCACTCCCGTCCTTCTGTTTAGATGGTGACGTTCAATCACATCCTCGGAACAACCTTCCTTTTTCAGCTAATATTGACGGATTGGCACCTGACACTTTGCTGTCAAGAGGATATGACTCTCAGAAAGATCTTCAGAACTTACTGGCCAACTATGGTGGGACACCAAGAGATATTGAGACAGAATTATCTACTGCTGCAATCAGCTCTCAATCATTTGGGGCGCCAAACATGCCATTCAAGCCTGGATGCTCTAGCGATGTTGCTCTAAATGATGCCGGAGTTCTAAATAATGGTCTGTGGGGATCACAGCCCCAACGTATGAGAACGTATACAAAGGTACAAAAGCGTGGATTAGTGGGAAGATGTATTGATGTCACCCGGTATAAAGGCTATGATGAGCTCCGGCATGATCTAGCCCGCATGTTTGGGATTGAAGGGCAACTAGAAGATCCACAAAGAACTGAATGGAAGCTTGTTTATGTGGATCACGAAAATGACATACTTCTTGTTGGTGATGATCCATGGGAGGAGTTTGTGAGCTGTGTTCAGAGTATAAAGATACTGTCATCTGTTGAAGTACAACAAATGAGCTTGGATGGAGATCTGGGAAATGTTCCAGTCCCCAACCAAGCTTGCAGCGGAACTGACAGTGGAAATGCATGGAGGCCACCTTATGATGATAACTCTGCAGCCTCCTTCAATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

1106

Amino Acids

124.26

Weight (kDa)

6.32

Isoelectric Point (pI)

71.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	126 - 227	2.1e-20	B3 DNA binding domain
BRWD_AD	PF25313	254 - 357	4.2e-07	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	275 - 357	2.1e-35	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19220 AT5G20730 AT5G20730 AT5G20730
fragaria_vesca	FvH4_1g09150 FvH4_1g09150 FvH4_1g09150
malus_domestica	MD02G1096700.v1.1 MD15G1221400.v1.1
prunus_persica	Prupe.7G194200_v2.0.a1 Prupe.7G194200_v2.0.a1
pyrus_communis	pycom02g07670
rosa_chinensis	RchiOBHm_Chr2g0095551
rosa_laevigata	RLG00000016578
rosa_multiflora	Rmu_sc0005382.1_g000007 Rmu_sc0038699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00146200
rosa_rugosa	Rorug02G0052300
rosa_samantha	Rh2AG100100 Rh2BG101600 Rh2CG103700 Rh2DG101000
rosa_wichuraiana	Rw2G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AarI	CACCTGC	1 cut(s)	408
AasI	GACNNNNNNGTC	1 cut(s)	742
Acc36I	ACCTGC	1 cut(s)	408
Acc65I	GGTACC	2 cut(s)	661, 2531
AccB1I	GGYRCC	5 cut(s)	396, 661, 2531, 2695, 2830
AccB7I	CCANNNNNTGG	2 cut(s)	1017, 1022
AccBSI	CCGCTC	1 cut(s)	1124
AccI	GTMKAC	2 cut(s)	692, 2939
AccII	CGCG	1 cut(s)	381
AccIII	TCCGGA	2 cut(s)	2425, 2564
AciI	CCGC	6 cut(s)	381, 1122, 1547, 2414, 3028, 3249
AclWI	GGATC	7 cut(s)	1178, 2411, 2424, 2920, 3053, 3102, 3122
AcoI	YGGCCR	2 cut(s)	382, 2754
AcsI	RAATTY	9 cut(s)	573, 811, 1045, 1201, 1672, 1768, 1806, 1962, 2453
AcuI	CTGAAG	5 cut(s)	759, 815, 1688, 1964, 2726
AcyI	GRCGYC	2 cut(s)	164, 2831
AfaI	GTAC	9 cut(s)	241, 261, 663, 769, 801, 1926, 2533, 2949, 3189
AfiI	CCNNNNNNNGG	6 cut(s)	322, 1017, 1022, 1147, 1943, 3312
AjnI	CCWGG	4 cut(s)	961, 1066, 1213, 2851
AjuI	GAANNNNNNNTTGG	2 cut(s)	1657, 1689
AloI	GAACNNNNNNTCC	2 cut(s)	444, 476
Alw21I	GWGCWC	1 cut(s)	3012
Alw26I	GTCTC	5 cut(s)	5, 706, 728, 1646, 2780
AlwI	GGATC	7 cut(s)	1178, 2411, 2424, 2920, 3053, 3102, 3122
AlwNI	CAGNNNCTG	4 cut(s)	328, 1312, 1438, 2089
Ama87I	CYCGRG	1 cut(s)	634
Aor13HI	TCCGGA	2 cut(s)	2425, 2564
AoxI	GGCC	8 cut(s)	175, 382, 866, 1295, 1537, 2091, 2754, 3275
ApoI	RAATTY	9 cut(s)	573, 811, 1045, 1201, 1672, 1768, 1806, 1962, 2453
AseI	ATTAAT	2 cut(s)	1385, 1448
Asp700I	GAANNNNTTC	2 cut(s)	998, 2293
Asp718I	GGTACC	2 cut(s)	661, 2531
AspLEI	GCGC	2 cut(s)	825, 2833
AspS9I	GGNCC	5 cut(s)	175, 1296, 2092, 2318, 2507
AsuC2I	CCSGG	1 cut(s)	2989
AsuHPI	GGTGA	5 cut(s)	872, 2208, 2648, 2977, 3134
AsuII	TTCGAA	1 cut(s)	47
AsuNHI	GCTAGC	1 cut(s)	2588
AvaI	CYCGRG	1 cut(s)	634
AvaII	GGWCC	2 cut(s)	2318, 2507
BaeGI	GKGCMC	1 cut(s)	1735
BaeI	ACNNNNGTAYC	2 cut(s)	751, 784
BalI	TGGCCA	1 cut(s)	2756
BamHI	GGATCC	1 cut(s)	2416
BanI	GGYRCC	5 cut(s)	396, 661, 2531, 2695, 2830
BanII	GRGCYC	1 cut(s)	3012
Bbv12I	GWGCWC	1 cut(s)	3012
BbvCI	CCTCAGC	1 cut(s)	2232
BceAI	ACGGC	1 cut(s)	1604
BciT130I	CCWGG	4 cut(s)	963, 1068, 1215, 2853
BclI	TGATCA	1 cut(s)	2542
BcnI	CCSGG	1 cut(s)	2989
BcoDI	GTCTC	5 cut(s)	5, 706, 728, 1646, 2780
BfaI	CTAG	8 cut(s)	228, 296, 870, 2436, 2589, 2862, 3023, 3053
BfmI	CTRYAG	6 cut(s)	585, 1313, 1439, 1550, 2078, 3297
BfoI	RGCGCY	1 cut(s)	2834
BfuAI	ACCTGC	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	394
BglII	AGATCT	3 cut(s)	282, 2737, 3211
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	5 cut(s)	963, 1068, 1215, 2853, 2989
Bme18I	GGWCC	2 cut(s)	2318, 2507
BmeT110I	CYCGRG	1 cut(s)	634
BmgT120I	GGNCC	5 cut(s)	175, 1296, 2092, 2318, 2507
BmrFI	CCNGG	5 cut(s)	963, 1068, 1215, 2853, 2989
BmsI	GCATC	7 cut(s)	297, 445, 957, 2152, 2575, 2846, 2872
BmtI	GCTAGC	1 cut(s)	2592
BpmI	CTGGAG	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	2232
Bpu14I	TTCGAA	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	164, 1518
BpuMI	CCSGG	1 cut(s)	2989
BsaBI	GATNNNNATC	1 cut(s)	3210
BsaHI	GRCGYC	2 cut(s)	164, 2831
BsaI	GGTCTC	1 cut(s)	1646
BsaJI	CCNNGG	8 cut(s)	635, 962, 1016, 1066, 1067, 1146, 2654, 3131
BsaWI	WCCGGW	2 cut(s)	2425, 2564
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	6 cut(s)	322, 1017, 1022, 1147, 1943, 3312
Bse118I	RCCGGY	1 cut(s)	1787
Bse1I	ACTGG	8 cut(s)	131, 165, 415, 781, 1234, 2420, 2757, 3227
Bse3DI	GCAATG	2 cut(s)	693, 1877
Bse8I	GATNNNNATC	1 cut(s)	3210
BseAI	TCCGGA	2 cut(s)	2425, 2564
BseBI	CCWGG	4 cut(s)	963, 1068, 1215, 2853
BseDI	CCNNGG	8 cut(s)	635, 962, 1016, 1066, 1067, 1146, 2654, 3131
BseGI	GGATG	9 cut(s)	850, 972, 1095, 1187, 2320, 2590, 2650, 2861, 3211
BseJI	GATNNNNATC	1 cut(s)	3210
BseLI	CCNNNNNNNGG	6 cut(s)	322, 1017, 1022, 1147, 1943, 3312
BseMI	GCAATG	2 cut(s)	693, 1877
BseMII	CTCAG	9 cut(s)	192, 500, 642, 1139, 1502, 1712, 1944, 2246, 2744
BseNI	ACTGG	8 cut(s)	131, 165, 415, 781, 1234, 2420, 2757, 3227
BseRI	GAGGAG	1 cut(s)	3152
BseSI	GKGCMC	1 cut(s)	1735
BseYI	CCCAGC	3 cut(s)	316, 1740, 2139
BsgI	GTGCAG	3 cut(s)	291, 1103, 1209
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	8 cut(s)	177, 384, 868, 1297, 1539, 2093, 2756, 3277
BshNI	GGYRCC	5 cut(s)	396, 661, 2531, 2695, 2830
BsiHKAI	GWGCWC	1 cut(s)	3012
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	6 cut(s)	1788, 2426, 2565, 2886, 2989, 3013
BslFI	GGGAC	5 cut(s)	1858, 2122, 2320, 2782, 3215
BslI	CCNNNNNNNGG	6 cut(s)	322, 1017, 1022, 1147, 1943, 3312
BsmAI	GTCTC	5 cut(s)	5, 706, 728, 1646, 2780
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	5 cut(s)	1858, 2122, 2320, 2782, 3215
BsmI	GAATGC	2 cut(s)	1000, 1714
BsnI	GGCC	8 cut(s)	177, 384, 868, 1297, 1539, 2093, 2756, 3277
Bso31I	GGTCTC	1 cut(s)	1646
BsoBI	CYCGRG	1 cut(s)	634
Bsp119I	TTCGAA	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	1735, 3012
Bsp13I	TCCGGA	2 cut(s)	2425, 2564
Bsp19I	CCATGG	3 cut(s)	1016, 1146, 3131
BspACI	CCGC	6 cut(s)	381, 1122, 1547, 2414, 3028, 3249
BspANI	GGCC	8 cut(s)	177, 384, 868, 1297, 1539, 2093, 2756, 3277
BspCNI	CTCAG	9 cut(s)	193, 499, 643, 1138, 1501, 1711, 1945, 2245, 2743
BspEI	TCCGGA	2 cut(s)	2425, 2564
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	2449
BspMAI	CTGCAG	5 cut(s)	589, 1317, 1443, 1554, 3301
BspMI	ACCTGC	1 cut(s)	408
BspOI	GCTAGC	1 cut(s)	2592
BspPI	GGATC	7 cut(s)	1178, 2411, 2424, 2920, 3053, 3102, 3122
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	5 cut(s)	396, 661, 2531, 2695, 2830
BspTNI	GGTCTC	1 cut(s)	1646
BsrBI	CCGCTC	1 cut(s)	1124
BsrDI	GCAATG	2 cut(s)	693, 1877
BsrFI	RCCGGY	1 cut(s)	1787
BsrI	ACTGG	8 cut(s)	131, 165, 415, 781, 1234, 2420, 2757, 3227
BssAI	RCCGGY	1 cut(s)	1787
BssECI	CCNNGG	8 cut(s)	635, 962, 1016, 1066, 1067, 1146, 2654, 3131
BssNAI	GTATAC	2 cut(s)	693, 2940
BssNI	GRCGYC	2 cut(s)	164, 2831
BssT1I	CCWWGG	3 cut(s)	1016, 1146, 3131
Bst1107I	GTATAC	2 cut(s)	693, 2940
Bst2UI	CCWGG	4 cut(s)	963, 1068, 1215, 2853
Bst6I	CTCTTC	3 cut(s)	541, 735, 2566
BstACI	GRCGYC	2 cut(s)	164, 2831
BstAPI	GCANNNNNTGC	8 cut(s)	593, 1312, 1324, 1438, 1450, 1888, 2074, 2122
BstBI	TTCGAA	1 cut(s)	47
BstDEI	CTNAG	9 cut(s)	201, 486, 651, 1125, 1488, 1698, 1953, 2232, 2730
BstDSI	CCRYGG	3 cut(s)	1016, 1146, 3131
BstF5I	GGATG	9 cut(s)	850, 972, 1095, 1187, 2320, 2590, 2650, 2861, 3211
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	2834
BstHHI	GCGC	2 cut(s)	825, 2833
BstMAI	GTCTC	5 cut(s)	5, 706, 728, 1646, 2780
BstNI	CCWGG	4 cut(s)	963, 1068, 1215, 2853
BstNSI	RCATGY	7 cut(s)	64, 86, 565, 715, 2240, 2842, 3034
BstSCI	CCNGG	5 cut(s)	961, 1066, 1213, 2851, 2987
BstSFI	CTRYAG	6 cut(s)	585, 1313, 1439, 1550, 2078, 3297
BstSLI	GKGCMC	1 cut(s)	1735
BstUI	CGCG	1 cut(s)	381
BstX2I	RGATCY	5 cut(s)	282, 2416, 2737, 3058, 3211
BstYI	RGATCY	5 cut(s)	282, 2416, 2737, 3058, 3211
BstZ17I	GTATAC	2 cut(s)	693, 2940
BsuRI	GGCC	8 cut(s)	177, 384, 868, 1297, 1539, 2093, 2756, 3277
BtgI	CCRYGG	3 cut(s)	1016, 1146, 3131
BtgZI	GCGATG	2 cut(s)	1917, 2880
BtsCI	GGATG	9 cut(s)	850, 972, 1095, 1187, 2320, 2590, 2650, 2861, 3211
BtsI	GCAGTG	2 cut(s)	1091, 1735
BtsIMutI	CAGTG	7 cut(s)	616, 774, 1091, 1735, 2219, 2538, 3265
BveI	ACCTGC	1 cut(s)	408
CaiI	CAGNNNCTG	4 cut(s)	328, 1312, 1438, 2089
CciI	TCATGA	1 cut(s)	2449
CfoI	GCGC	2 cut(s)	825, 2833
Cfr10I	RCCGGY	1 cut(s)	1787
Cfr13I	GGNCC	5 cut(s)	175, 1296, 2092, 2318, 2507
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	9 cut(s)	240, 260, 662, 768, 800, 1925, 2532, 2948, 3188
CspCI	CAANNNNNGTGG	2 cut(s)	2746, 2781
CviQI	GTAC	9 cut(s)	240, 260, 662, 768, 800, 1925, 2532, 2948, 3188
DdeI	CTNAG	9 cut(s)	201, 486, 651, 1125, 1488, 1698, 1953, 2232, 2730
DinI	GGCGCC	1 cut(s)	2832
DrdI	GACNNNNNNGTC	1 cut(s)	742
DseDI	GACNNNNNNGTC	1 cut(s)	742
EaeI	YGGCCR	2 cut(s)	382, 2754
Eam1104I	CTCTTC	3 cut(s)	541, 735, 2566
EarI	CTCTTC	3 cut(s)	541, 735, 2566
Ecl136II	GAGCTC	1 cut(s)	3010
Eco130I	CCWWGG	3 cut(s)	1016, 1146, 3131
Eco24I	GRGCYC	1 cut(s)	3012
Eco31I	GGTCTC	1 cut(s)	1646
Eco32I	GATATC	1 cut(s)	2473
Eco47I	GGWCC	2 cut(s)	2318, 2507
Eco53kI	GAGCTC	1 cut(s)	3010
Eco57I	CTGAAG	5 cut(s)	759, 815, 1688, 1964, 2726
Eco88I	CYCGRG	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	3010
EcoRI	GAATTC	3 cut(s)	573, 1768, 2453
EcoRII	CCWGG	4 cut(s)	961, 1066, 1213, 2851
EcoRV	GATATC	1 cut(s)	2473
EcoT14I	CCWWGG	3 cut(s)	1016, 1146, 3131
EcoT22I	ATGCAT	3 cut(s)	62, 1392, 3271
EcoT38I	GRGCYC	1 cut(s)	3012
EgeI	GGCGCC	1 cut(s)	2832
EheI	GGCGCC	1 cut(s)	2832
ErhI	CCWWGG	3 cut(s)	1016, 1146, 3131
Esp3I	CGTCTC	1 cut(s)	5
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	5 cut(s)	1858, 2122, 2320, 2782, 3215
FauI	CCCGC	1 cut(s)	3035
FbaI	TGATCA	1 cut(s)	2542
FblI	GTMKAC	2 cut(s)	692, 2939
FokI	GGATG	9 cut(s)	857, 979, 1102, 1174, 2327, 2597, 2637, 2868, 3218
FriOI	GRGCYC	1 cut(s)	3012
FspBI	CTAG	8 cut(s)	228, 296, 870, 2436, 2589, 2862, 3023, 3053
GlaI	GCGC	2 cut(s)	824, 2832
GsaI	CCCAGC	3 cut(s)	320, 1744, 2143
GsuI	CTGGAG	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	2834
HaeIII	GGCC	8 cut(s)	177, 384, 868, 1297, 1539, 2093, 2756, 3277
HapII	CCGG	6 cut(s)	1788, 2426, 2565, 2886, 2989, 3013
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	2 cut(s)	825, 2833
Hin1I	GRCGYC	2 cut(s)	164, 2831
Hin6I	GCGC	2 cut(s)	823, 2831
HinP1I	GCGC	2 cut(s)	823, 2831
HincII	GTYRAC	1 cut(s)	1619
HindII	GTYRAC	1 cut(s)	1619
HindIII	AAGCTT	3 cut(s)	2553, 3080, 3240
HpaII	CCGG	6 cut(s)	1788, 2426, 2565, 2886, 2989, 3013
HphI	GGTGA	5 cut(s)	872, 2208, 2648, 2977, 3134
Hpy166II	GTNNAC	6 cut(s)	136, 693, 1619, 1695, 1753, 2940
Hpy8I	GTNNAC	6 cut(s)	136, 693, 1619, 1695, 1753, 2940
Hpy99I	CGWCG	1 cut(s)	270
HpyCH4IV	ACGT	7 cut(s)	802, 1522, 2333, 2358, 2640, 2926, 2936
HpyF3I	CTNAG	9 cut(s)	201, 486, 651, 1125, 1488, 1698, 1953, 2232, 2730
HpySE526I	ACGT	7 cut(s)	802, 1522, 2333, 2358, 2640, 2926, 2936
Hsp92I	GRCGYC	2 cut(s)	164, 2831
HspAI	GCGC	2 cut(s)	823, 2831
KasI	GGCGCC	1 cut(s)	2830
Kpn2I	TCCGGA	2 cut(s)	2425, 2564
KpnI	GGTACC	2 cut(s)	665, 2535
KroI	GCCGGC	1 cut(s)	1787
KroNI	GCCGGC	1 cut(s)	1789
Ksp22I	TGATCA	1 cut(s)	2542
LmnI	GCTCC	4 cut(s)	325, 1216, 1510, 3015
LweI	GCATC	7 cut(s)	297, 445, 957, 2152, 2575, 2846, 2872
MaeI	CTAG	8 cut(s)	228, 296, 870, 2436, 2589, 2862, 3023, 3053
MaeII	ACGT	7 cut(s)	802, 1522, 2333, 2358, 2640, 2926, 2936
MaeIII	GTNAC	9 cut(s)	73, 230, 904, 1288, 1839, 2275, 2438, 2636, 2983
MbiI	CCGCTC	1 cut(s)	1124
MboII	GAAGA	9 cut(s)	32, 528, 752, 821, 1412, 2553, 2732, 2982, 3068
MfeI	CAATTG	2 cut(s)	1817, 2111
MflI	RGATCY	5 cut(s)	282, 2416, 2737, 3058, 3211
MhlI	GDGCHC	2 cut(s)	1735, 3012
MlsI	TGGCCA	1 cut(s)	2756
MluNI	TGGCCA	1 cut(s)	2756
Mly113I	GGCGCC	1 cut(s)	2831
MlyI	GAGTC	6 cut(s)	115, 435, 752, 1450, 1793, 2720
MmeI	TCCRAC	4 cut(s)	151, 395, 785, 2529
Mox20I	TGGCCA	1 cut(s)	2756
Mph1103I	ATGCAT	3 cut(s)	62, 1392, 3271
MroI	TCCGGA	2 cut(s)	2425, 2564
MroNI	GCCGGC	1 cut(s)	1787
MroXI	GAANNNNTTC	2 cut(s)	998, 2293
MscI	TGGCCA	1 cut(s)	2756
MseI	TTAA	5 cut(s)	1238, 1385, 1448, 2159, 2520
MslI	CAYNNNNRTG	2 cut(s)	351, 3102
Msp20I	TGGCCA	1 cut(s)	2756
MspA1I	CMGCKG	9 cut(s)	275, 584, 857, 1312, 1438, 1474, 1549, 2089, 3249
MspI	CCGG	6 cut(s)	1788, 2426, 2565, 2886, 2989, 3013
MspR9I	CCNGG	5 cut(s)	963, 1068, 1215, 2853, 2989
MunI	CAATTG	2 cut(s)	1817, 2111
Mva1269I	GAATGC	2 cut(s)	1000, 1714
MvaI	CCWGG	4 cut(s)	963, 1068, 1215, 2853
MvnI	CGCG	1 cut(s)	381
NaeI	GCCGGC	1 cut(s)	1789
NarI	GGCGCC	1 cut(s)	2831
NciI	CCSGG	1 cut(s)	2989
NcoI	CCATGG	3 cut(s)	1016, 1146, 3131
NgoMIV	GCCGGC	1 cut(s)	1787
NheI	GCTAGC	1 cut(s)	2588
NmeAIII	GCCGAG	1 cut(s)	899
NmuCI	GTSAC	5 cut(s)	73, 230, 1288, 2636, 2983
NsiI	ATGCAT	3 cut(s)	62, 1392, 3271
NspI	RCATGY	7 cut(s)	64, 86, 565, 715, 2240, 2842, 3034
NspV	TTCGAA	1 cut(s)	47
PaeI	GCATGC	3 cut(s)	64, 565, 715
PagI	TCATGA	1 cut(s)	2449
PaqCI	CACCTGC	1 cut(s)	408
PasI	CCCWGGG	1 cut(s)	1067
PcsI	WCGNNNNNNNCGW	1 cut(s)	871
PctI	GAATGC	2 cut(s)	1000, 1714
PdiI	GCCGGC	1 cut(s)	1789
PdmI	GAANNNNTTC	2 cut(s)	998, 2293
PfeI	GAWTC	7 cut(s)	717, 794, 848, 980, 1330, 2386, 2478
PflMI	CCANNNNNTGG	2 cut(s)	1017, 1022
PleI	GAGTC	6 cut(s)	115, 435, 751, 1450, 1793, 2720
PluTI	GGCGCC	1 cut(s)	2834
PpsI	GAGTC	6 cut(s)	115, 435, 751, 1450, 1793, 2720
PshBI	ATTAAT	2 cut(s)	1385, 1448
PsiI	TTATAA	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	3012
Psp6I	CCWGG	4 cut(s)	961, 1066, 1213, 2851
PspFI	CCCAGC	3 cut(s)	316, 1740, 2139
PspGI	CCWGG	4 cut(s)	961, 1066, 1213, 2851
PspPI	GGNCC	5 cut(s)	175, 1296, 2092, 2318, 2507
PstI	CTGCAG	5 cut(s)	589, 1317, 1443, 1554, 3301
PstNI	CAGNNNCTG	4 cut(s)	328, 1312, 1438, 2089
PsuI	RGATCY	5 cut(s)	282, 2416, 2737, 3058, 3211
PvuII	CAGCTG	7 cut(s)	275, 584, 857, 1312, 1438, 1474, 2089
RsaI	GTAC	9 cut(s)	241, 261, 663, 769, 801, 1926, 2533, 2949, 3189
RsaNI	GTAC	9 cut(s)	240, 260, 662, 768, 800, 1925, 2532, 2948, 3188
RseI	CAYNNNNRTG	2 cut(s)	351, 3102
SacI	GAGCTC	1 cut(s)	3012
SaqAI	TTAA	5 cut(s)	1238, 1385, 1448, 2159, 2520
Sau96I	GGNCC	5 cut(s)	175, 1296, 2092, 2318, 2507
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	6 cut(s)	115, 435, 752, 1450, 1793, 2720
ScrFI	CCNGG	5 cut(s)	963, 1068, 1215, 2853, 2989
SduI	GDGCHC	2 cut(s)	1735, 3012
SfaNI	GCATC	7 cut(s)	297, 445, 957, 2152, 2575, 2846, 2872
SfcI	CTRYAG	6 cut(s)	585, 1313, 1439, 1550, 2078, 3297
SfoI	GGCGCC	1 cut(s)	2832
SfuI	TTCGAA	1 cut(s)	47
SinI	GGWCC	2 cut(s)	2318, 2507
SmiMI	CAYNNNNRTG	2 cut(s)	351, 3102
SmlI	CTYRAG	2 cut(s)	179, 1533
SmoI	CTYRAG	2 cut(s)	179, 1533
SphI	GCATGC	3 cut(s)	64, 565, 715
SsiI	CCGC	6 cut(s)	381, 1122, 1547, 2414, 3028, 3249
SspDI	GGCGCC	1 cut(s)	2830
SspI	AATATT	1 cut(s)	2683
SspMI	CTAG	8 cut(s)	228, 296, 870, 2436, 2589, 2862, 3023, 3053
SstI	GAGCTC	1 cut(s)	3012
StyD4I	CCNGG	5 cut(s)	961, 1066, 1213, 2851, 2987
StyI	CCWWGG	3 cut(s)	1016, 1146, 3131
TaiI	ACGT	7 cut(s)	805, 1525, 2336, 2361, 2643, 2929, 2939
TaqI	TCGA	3 cut(s)	47, 305, 1058
TatI	WGTACW	3 cut(s)	239, 1924, 3187
TauI	GCSGC	2 cut(s)	384, 1124
TfiI	GAWTC	7 cut(s)	717, 794, 848, 980, 1330, 2386, 2478
Tru1I	TTAA	5 cut(s)	1238, 1385, 1448, 2159, 2520
Tru9I	TTAA	5 cut(s)	1238, 1385, 1448, 2159, 2520
TscAI	CASTG	7 cut(s)	616, 781, 1091, 1735, 2226, 2545, 3265
TseFI	GTSAC	5 cut(s)	73, 230, 1288, 2636, 2983
Tsp45I	GTSAC	5 cut(s)	73, 230, 1288, 2636, 2983
TspGWI	ACGGA	3 cut(s)	29, 1188, 2703
TspRI	CASTG	7 cut(s)	616, 781, 1091, 1735, 2226, 2545, 3265
Van91I	CCANNNNNTGG	2 cut(s)	1017, 1022
VpaK11BI	GGWCC	2 cut(s)	2318, 2507
VspI	ATTAAT	2 cut(s)	1385, 1448
XapI	RAATTY	9 cut(s)	573, 811, 1045, 1201, 1672, 1768, 1806, 1962, 2453
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	7 cut(s)	64, 86, 565, 715, 2240, 2842, 3034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1290
XmiI	GTMKAC	2 cut(s)	692, 2939
XmnI	GAANNNNTTC	2 cut(s)	998, 2293
XspI	CTAG	8 cut(s)	228, 296, 870, 2436, 2589, 2862, 3023, 3053
ZrmI	AGTACT	1 cut(s)	241
Zsp2I	ATGCAT	3 cut(s)	62, 1392, 3271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.