Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19220 AT5G20730 AT5G20730 AT5G20730 |
| fragaria_vesca | FvH4_1g09150 FvH4_1g09150 FvH4_1g09150 |
| malus_domestica | MD02G1096700.v1.1 MD15G1221400.v1.1 |
| prunus_persica | Prupe.7G194200_v2.0.a1 Prupe.7G194200_v2.0.a1 |
| pyrus_communis | pycom02g07670 |
| rosa_chinensis | RchiOBHm_Chr2g0095551 |
| rosa_laevigata | RLG00000016578 |
| rosa_multiflora | Rmu_sc0005382.1_g000007 Rmu_sc0038699.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00146200 |
| rosa_rugosa | Rorug02G0052300 |
| rosa_samantha | Rh2AG100100 Rh2BG101600 Rh2CG103700 Rh2DG101000 |
| rosa_wichuraiana | Rw2G007600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 341 |
| AarI | CACCTGC | 1 cut(s) | 279 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 613 |
| Acc36I | ACCTGC | 1 cut(s) | 279 |
| Acc65I | GGTACC | 2 cut(s) | 532, 2393 |
| AccB1I | GGYRCC | 6 cut(s) | 267, 532, 2393, 2557, 2692, 3139 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 888, 893 |
| AccI | GTMKAC | 2 cut(s) | 563, 2801 |
| AccII | CGCG | 2 cut(s) | 252, 2474 |
| AciI | CCGC | 7 cut(s) | 252, 1697, 1769, 1931, 2025, 2288, 2890 |
| AcoI | YGGCCR | 1 cut(s) | 253 |
| AcsI | RAATTY | 5 cut(s) | 916, 1072, 1543, 1639, 1677 |
| AcuI | CTGAAG | 5 cut(s) | 630, 686, 1559, 1835, 2588 |
| AcyI | GRCGYC | 1 cut(s) | 35 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 888, 893, 1001, 1018 |
| AflIII | ACRYGT | 1 cut(s) | 2098 |
| AjnI | CCWGG | 5 cut(s) | 832, 937, 1084, 2217, 2713 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1528, 1560 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 315, 347 |
| Alw21I | GWGCWC | 2 cut(s) | 2723, 2874 |
| Alw26I | GTCTC | 3 cut(s) | 599, 2004, 2642 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1183, 1306, 1951 |
| ApoI | RAATTY | 5 cut(s) | 916, 1072, 1543, 1639, 1677 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 155, 869, 2155 |
| Asp718I | GGTACC | 2 cut(s) | 532, 2393 |
| AspLEI | GCGC | 3 cut(s) | 193, 696, 2476 |
| AspS9I | GGNCC | 8 cut(s) | 46, 510, 1102, 1167, 1954, 2092, 2180, 2782 |
| AsuC2I | CCSGG | 2 cut(s) | 1101, 2851 |
| AsuHPI | GGTGA | 4 cut(s) | 743, 2070, 2510, 2996 |
| AsuII | TTCGAA | 1 cut(s) | 2338 |
| AsuNHI | GCTAGC | 1 cut(s) | 2450 |
| AvaII | GGWCC | 1 cut(s) | 2180 |
| BaeGI | GKGCMC | 2 cut(s) | 2695, 3142 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 622, 655 |
| BamHI | GGATCC | 2 cut(s) | 664, 2278 |
| BanI | GGYRCC | 6 cut(s) | 267, 532, 2393, 2557, 2692, 3139 |
| BanII | GRGCYC | 1 cut(s) | 2874 |
| Bbv12I | GWGCWC | 2 cut(s) | 2723, 2874 |
| BceAI | ACGGC | 2 cut(s) | 1472, 1738 |
| BciT130I | CCWGG | 5 cut(s) | 834, 939, 1086, 2219, 2715 |
| BclI | TGATCA | 1 cut(s) | 2404 |
| BcnI | CCSGG | 2 cut(s) | 1101, 2851 |
| BcoDI | GTCTC | 3 cut(s) | 599, 2004, 2642 |
| BfaI | CTAG | 8 cut(s) | 99, 167, 741, 2298, 2451, 2724, 2885, 2915 |
| BfmI | CTRYAG | 7 cut(s) | 8, 456, 1184, 1307, 1418, 1940, 3159 |
| BfuAI | ACCTGC | 1 cut(s) | 279 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 265 |
| BglII | AGATCT | 3 cut(s) | 153, 2599, 3073 |
| BmcAI | AGTACT | 1 cut(s) | 112 |
| Bme1390I | CCNGG | 7 cut(s) | 834, 939, 1086, 1101, 2219, 2715, 2851 |
| Bme18I | GGWCC | 1 cut(s) | 2180 |
| BmgT120I | GGNCC | 8 cut(s) | 46, 510, 1102, 1167, 1954, 2092, 2180, 2782 |
| BmrFI | CCNGG | 7 cut(s) | 834, 939, 1086, 1101, 2219, 2715, 2851 |
| BmsI | GCATC | 7 cut(s) | 316, 828, 1308, 2014, 2076, 2437, 2734 |
| BmtI | GCTAGC | 1 cut(s) | 2454 |
| BpmI | CTGGAG | 2 cut(s) | 342, 2769 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2873 |
| Bpu14I | TTCGAA | 1 cut(s) | 2338 |
| BpuEI | CTTGAG | 2 cut(s) | 35, 1386 |
| BpuMI | CCSGG | 2 cut(s) | 1101, 2851 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3072 |
| BsaHI | GRCGYC | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 8 cut(s) | 506, 833, 887, 937, 1017, 2516, 2714, 2993 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 315, 345 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 888, 893, 1001, 1018 |
| Bse1I | ACTGG | 8 cut(s) | 36, 286, 652, 1105, 2135, 2282, 2376, 2942 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3072 |
| BseBI | CCWGG | 5 cut(s) | 834, 939, 1086, 2219, 2715 |
| BseDI | CCNNGG | 8 cut(s) | 506, 833, 887, 937, 1017, 2516, 2714, 2993 |
| BseJI | GATNNNNATC | 1 cut(s) | 3072 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 888, 893, 1001, 1018 |
| BseNI | ACTGG | 8 cut(s) | 36, 286, 652, 1105, 2135, 2282, 2376, 2942 |
| BseRI | GAGGAG | 1 cut(s) | 3014 |
| BseSI | GKGCMC | 2 cut(s) | 2695, 3142 |
| BseYI | CCCAGC | 1 cut(s) | 1611 |
| BsgI | GTGCAG | 3 cut(s) | 162, 974, 1080 |
| Bsh1236I | CGCG | 2 cut(s) | 252, 2474 |
| BshNI | GGYRCC | 6 cut(s) | 267, 532, 2393, 2557, 2692, 3139 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2723, 2874 |
| BsiSI | CCGG | 2 cut(s) | 1100, 2851 |
| BslFI | GGGAC | 3 cut(s) | 1729, 2189, 2644 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 888, 893, 1001, 1018 |
| BsmAI | GTCTC | 3 cut(s) | 599, 2004, 2642 |
| BsmFI | GGGAC | 3 cut(s) | 1729, 2189, 2644 |
| BsmI | GAATGC | 2 cut(s) | 871, 1585 |
| Bsp119I | TTCGAA | 1 cut(s) | 2338 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2695, 2723, 2874, 3142 |
| Bsp19I | CCATGG | 3 cut(s) | 887, 1017, 2993 |
| BspACI | CCGC | 7 cut(s) | 252, 1697, 1769, 1931, 2025, 2288, 2890 |
| BspFNI | CGCG | 2 cut(s) | 252, 2474 |
| BspHI | TCATGA | 1 cut(s) | 2311 |
| BspMAI | CTGCAG | 6 cut(s) | 12, 460, 1188, 1311, 1422, 3163 |
| BspMI | ACCTGC | 1 cut(s) | 279 |
| BspOI | GCTAGC | 1 cut(s) | 2454 |
| BspT104I | TTCGAA | 1 cut(s) | 2338 |
| BspT107I | GGYRCC | 6 cut(s) | 267, 532, 2393, 2557, 2692, 3139 |
| BsrI | ACTGG | 8 cut(s) | 36, 286, 652, 1105, 2135, 2282, 2376, 2942 |
| BssECI | CCNNGG | 8 cut(s) | 506, 833, 887, 937, 1017, 2516, 2714, 2993 |
| BssNAI | GTATAC | 2 cut(s) | 564, 2802 |
| BssNI | GRCGYC | 1 cut(s) | 35 |
| BssT1I | CCWWGG | 4 cut(s) | 506, 887, 1017, 2993 |
| Bst1107I | GTATAC | 2 cut(s) | 564, 2802 |
| Bst2UI | CCWGG | 5 cut(s) | 834, 939, 1086, 2219, 2715 |
| Bst6I | CTCTTC | 3 cut(s) | 412, 606, 2428 |
| BstACI | GRCGYC | 1 cut(s) | 35 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 464, 1183, 1195, 1306, 1318 |
| BstBI | TTCGAA | 1 cut(s) | 2338 |
| BstDSI | CCRYGG | 3 cut(s) | 887, 1017, 2993 |
| BstFNI | CGCG | 2 cut(s) | 252, 2474 |
| BstHHI | GCGC | 3 cut(s) | 193, 696, 2476 |
| BstMAI | GTCTC | 3 cut(s) | 599, 2004, 2642 |
| BstNI | CCWGG | 5 cut(s) | 834, 939, 1086, 2219, 2715 |
| BstNSI | RCATGY | 5 cut(s) | 436, 586, 2102, 2704, 2896 |
| BstSCI | CCNGG | 7 cut(s) | 832, 937, 1084, 1099, 2217, 2713, 2849 |
| BstSFI | CTRYAG | 7 cut(s) | 8, 456, 1184, 1307, 1418, 1940, 3159 |
| BstSLI | GKGCMC | 2 cut(s) | 2695, 3142 |
| BstUI | CGCG | 2 cut(s) | 252, 2474 |
| BstX2I | RGATCY | 6 cut(s) | 153, 664, 2278, 2599, 2920, 3073 |
| BstYI | RGATCY | 6 cut(s) | 153, 664, 2278, 2599, 2920, 3073 |
| BstZ17I | GTATAC | 2 cut(s) | 564, 2802 |
| BtgI | CCRYGG | 3 cut(s) | 887, 1017, 2993 |
| BtgZI | GCGATG | 1 cut(s) | 572 |
| BtsI | GCAGTG | 2 cut(s) | 962, 3115 |
| BtsIMutI | CAGTG | 7 cut(s) | 645, 962, 2289, 2400, 2832, 3115, 3127 |
| BveI | ACCTGC | 1 cut(s) | 279 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1183, 1306, 1951 |
| CciI | TCATGA | 1 cut(s) | 2311 |
| CfoI | GCGC | 3 cut(s) | 193, 696, 2476 |
| Cfr13I | GGNCC | 8 cut(s) | 46, 510, 1102, 1167, 1954, 2092, 2180, 2782 |
| CseI | GACGC | 1 cut(s) | 24 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 613 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 613 |
| EaeI | YGGCCR | 1 cut(s) | 253 |
| Eam1104I | CTCTTC | 3 cut(s) | 412, 606, 2428 |
| EarI | CTCTTC | 3 cut(s) | 412, 606, 2428 |
| EciI | GGCGGA | 1 cut(s) | 2303 |
| Ecl136II | GAGCTC | 1 cut(s) | 2872 |
| Eco130I | CCWWGG | 4 cut(s) | 506, 887, 1017, 2993 |
| Eco147I | AGGCCT | 1 cut(s) | 1407 |
| Eco24I | GRGCYC | 1 cut(s) | 2874 |
| Eco47I | GGWCC | 1 cut(s) | 2180 |
| Eco53kI | GAGCTC | 1 cut(s) | 2872 |
| Eco57I | CTGAAG | 5 cut(s) | 630, 686, 1559, 1835, 2588 |
| EcoICRI | GAGCTC | 1 cut(s) | 2872 |
| EcoRI | GAATTC | 1 cut(s) | 1639 |
| EcoRII | CCWGG | 5 cut(s) | 832, 937, 1084, 2217, 2713 |
| EcoT14I | CCWWGG | 4 cut(s) | 506, 887, 1017, 2993 |
| EcoT22I | ATGCAT | 2 cut(s) | 438, 3133 |
| EcoT38I | GRGCYC | 1 cut(s) | 2874 |
| ErhI | CCWWGG | 4 cut(s) | 506, 887, 1017, 2993 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 561, 593 |
| FaqI | GGGAC | 3 cut(s) | 1729, 2189, 2644 |
| FauI | CCCGC | 1 cut(s) | 2897 |
| FauNDI | CATATG | 1 cut(s) | 3145 |
| FbaI | TGATCA | 1 cut(s) | 2404 |
| FblI | GTMKAC | 2 cut(s) | 563, 2801 |
| FriOI | GRGCYC | 1 cut(s) | 2874 |
| FspBI | CTAG | 8 cut(s) | 99, 167, 741, 2298, 2451, 2724, 2885, 2915 |
| GlaI | GCGC | 3 cut(s) | 192, 695, 2475 |
| GsaI | CCCAGC | 1 cut(s) | 1615 |
| GsuI | CTGGAG | 2 cut(s) | 342, 2769 |
| HapII | CCGG | 2 cut(s) | 1100, 2851 |
| HgaI | GACGC | 1 cut(s) | 24 |
| HhaI | GCGC | 3 cut(s) | 193, 696, 2476 |
| Hin1I | GRCGYC | 1 cut(s) | 35 |
| Hin6I | GCGC | 3 cut(s) | 191, 694, 2474 |
| HinP1I | GCGC | 3 cut(s) | 191, 694, 2474 |
| HincII | GTYRAC | 1 cut(s) | 1490 |
| HindII | GTYRAC | 1 cut(s) | 1490 |
| HindIII | AAGCTT | 3 cut(s) | 2415, 2942, 3102 |
| HpaII | CCGG | 2 cut(s) | 1100, 2851 |
| HphI | GGTGA | 4 cut(s) | 743, 2070, 2510, 2996 |
| Hpy166II | GTNNAC | 5 cut(s) | 564, 1490, 1566, 1624, 2802 |
| Hpy8I | GTNNAC | 5 cut(s) | 564, 1490, 1566, 1624, 2802 |
| Hpy99I | CGWCG | 1 cut(s) | 141 |
| HpyAV | CCTTC | 8 cut(s) | 78, 528, 1418, 2165, 2211, 2304, 2494, 2900 |
| HpyCH4IV | ACGT | 2 cut(s) | 2788, 2798 |
| HpySE526I | ACGT | 2 cut(s) | 2788, 2798 |
| Hsp92I | GRCGYC | 1 cut(s) | 35 |
| HspAI | GCGC | 3 cut(s) | 191, 694, 2474 |
| KpnI | GGTACC | 2 cut(s) | 536, 2397 |
| Ksp22I | TGATCA | 1 cut(s) | 2404 |
| LmnI | GCTCC | 6 cut(s) | 196, 1087, 1126, 1378, 2290, 2481 |
| LweI | GCATC | 7 cut(s) | 316, 828, 1308, 2014, 2076, 2437, 2734 |
| MaeI | CTAG | 8 cut(s) | 99, 167, 741, 2298, 2451, 2724, 2885, 2915 |
| MaeII | ACGT | 2 cut(s) | 2788, 2798 |
| MfeI | CAATTG | 2 cut(s) | 1313, 1688 |
| MflI | RGATCY | 6 cut(s) | 153, 664, 2278, 2599, 2920, 3073 |
| MhlI | GDGCHC | 4 cut(s) | 2695, 2723, 2874, 3142 |
| MlyI | GAGTC | 6 cut(s) | 306, 623, 1318, 1489, 1664, 2582 |
| MmeI | TCCRAC | 6 cut(s) | 266, 642, 656, 688, 2137, 2391 |
| Mph1103I | ATGCAT | 2 cut(s) | 438, 3133 |
| MroXI | GAANNNNTTC | 3 cut(s) | 155, 869, 2155 |
| MseI | TTAA | 2 cut(s) | 1109, 2382 |
| MslI | CAYNNNNRTG | 2 cut(s) | 222, 2964 |
| MspA1I | CMGCKG | 8 cut(s) | 146, 455, 728, 1183, 1306, 1342, 1417, 1951 |
| MspI | CCGG | 2 cut(s) | 1100, 2851 |
| MspR9I | CCNGG | 7 cut(s) | 834, 939, 1086, 1101, 2219, 2715, 2851 |
| MunI | CAATTG | 2 cut(s) | 1313, 1688 |
| Mva1269I | GAATGC | 2 cut(s) | 871, 1585 |
| MvaI | CCWGG | 5 cut(s) | 834, 939, 1086, 2219, 2715 |
| MvnI | CGCG | 2 cut(s) | 252, 2474 |
| NciI | CCSGG | 2 cut(s) | 1101, 2851 |
| NcoI | CCATGG | 3 cut(s) | 887, 1017, 2993 |
| NdeI | CATATG | 1 cut(s) | 3145 |
| NheI | GCTAGC | 1 cut(s) | 2450 |
| NmeAIII | GCCGAG | 2 cut(s) | 770, 2051 |
| NmuCI | GTSAC | 3 cut(s) | 101, 1159, 1806 |
| NsiI | ATGCAT | 2 cut(s) | 438, 3133 |
| NspI | RCATGY | 5 cut(s) | 436, 586, 2102, 2704, 2896 |
| NspV | TTCGAA | 1 cut(s) | 2338 |
| PaeI | GCATGC | 2 cut(s) | 436, 586 |
| PagI | TCATGA | 1 cut(s) | 2311 |
| PaqCI | CACCTGC | 1 cut(s) | 279 |
| PceI | AGGCCT | 1 cut(s) | 1407 |
| PciI | ACATGT | 1 cut(s) | 2098 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 742 |
| PctI | GAATGC | 2 cut(s) | 871, 1585 |
| PdmI | GAANNNNTTC | 3 cut(s) | 155, 869, 2155 |
| PfeI | GAWTC | 7 cut(s) | 445, 588, 719, 851, 1201, 2248, 2340 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 888, 893 |
| PleI | GAGTC | 6 cut(s) | 306, 622, 1318, 1489, 1664, 2582 |
| PpsI | GAGTC | 6 cut(s) | 306, 622, 1318, 1489, 1664, 2582 |
| PscI | ACATGT | 1 cut(s) | 2098 |
| PsiI | TTATAA | 1 cut(s) | 341 |
| Psp124BI | GAGCTC | 1 cut(s) | 2874 |
| Psp6I | CCWGG | 5 cut(s) | 832, 937, 1084, 2217, 2713 |
| PspFI | CCCAGC | 1 cut(s) | 1611 |
| PspGI | CCWGG | 5 cut(s) | 832, 937, 1084, 2217, 2713 |
| PspPI | GGNCC | 8 cut(s) | 46, 510, 1102, 1167, 1954, 2092, 2180, 2782 |
| PstI | CTGCAG | 6 cut(s) | 12, 460, 1188, 1311, 1422, 3163 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1183, 1306, 1951 |
| PsuI | RGATCY | 6 cut(s) | 153, 664, 2278, 2599, 2920, 3073 |
| PvuII | CAGCTG | 8 cut(s) | 146, 455, 728, 1183, 1306, 1342, 1417, 1951 |
| RseI | CAYNNNNRTG | 2 cut(s) | 222, 2964 |
| SacI | GAGCTC | 1 cut(s) | 2874 |
| SaqAI | TTAA | 2 cut(s) | 1109, 2382 |
| Sau96I | GGNCC | 8 cut(s) | 46, 510, 1102, 1167, 1954, 2092, 2180, 2782 |
| ScaI | AGTACT | 1 cut(s) | 112 |
| SchI | GAGTC | 6 cut(s) | 306, 623, 1318, 1489, 1664, 2582 |
| ScrFI | CCNGG | 7 cut(s) | 834, 939, 1086, 1101, 2219, 2715, 2851 |
| SduI | GDGCHC | 4 cut(s) | 2695, 2723, 2874, 3142 |
| SfaNI | GCATC | 7 cut(s) | 316, 828, 1308, 2014, 2076, 2437, 2734 |
| SfcI | CTRYAG | 7 cut(s) | 8, 456, 1184, 1307, 1418, 1940, 3159 |
| SfuI | TTCGAA | 1 cut(s) | 2338 |
| SinI | GGWCC | 1 cut(s) | 2180 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 222, 2964 |
| SmlI | CTYRAG | 2 cut(s) | 50, 1401 |
| SmoI | CTYRAG | 2 cut(s) | 50, 1401 |
| SphI | GCATGC | 2 cut(s) | 436, 586 |
| SseBI | AGGCCT | 1 cut(s) | 1407 |
| SsiI | CCGC | 7 cut(s) | 252, 1697, 1769, 1931, 2025, 2288, 2890 |
| SspI | AATATT | 1 cut(s) | 2545 |
| SspMI | CTAG | 8 cut(s) | 99, 167, 741, 2298, 2451, 2724, 2885, 2915 |
| SstI | GAGCTC | 1 cut(s) | 2874 |
| StuI | AGGCCT | 1 cut(s) | 1407 |
| StyD4I | CCNGG | 7 cut(s) | 832, 937, 1084, 1099, 2217, 2713, 2849 |
| StyI | CCWWGG | 4 cut(s) | 506, 887, 1017, 2993 |
| TaiI | ACGT | 2 cut(s) | 2791, 2801 |
| TaqI | TCGA | 2 cut(s) | 929, 2338 |
| TatI | WGTACW | 4 cut(s) | 110, 546, 1795, 3049 |
| TauI | GCSGC | 2 cut(s) | 255, 1771 |
| TfiI | GAWTC | 7 cut(s) | 445, 588, 719, 851, 1201, 2248, 2340 |
| Tru1I | TTAA | 2 cut(s) | 1109, 2382 |
| Tru9I | TTAA | 2 cut(s) | 1109, 2382 |
| TscAI | CASTG | 7 cut(s) | 652, 962, 2289, 2407, 2832, 3115, 3127 |
| TseFI | GTSAC | 3 cut(s) | 101, 1159, 1806 |
| Tsp45I | GTSAC | 3 cut(s) | 101, 1159, 1806 |
| TspGWI | ACGGA | 1 cut(s) | 2520 |
| TspRI | CASTG | 7 cut(s) | 652, 962, 2289, 2407, 2832, 3115, 3127 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 888, 893 |
| VpaK11BI | GGWCC | 1 cut(s) | 2180 |
| XapI | RAATTY | 5 cut(s) | 916, 1072, 1543, 1639, 1677 |
| XceI | RCATGY | 5 cut(s) | 436, 586, 2102, 2704, 2896 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 575, 1161, 3107 |
| XmiI | GTMKAC | 2 cut(s) | 563, 2801 |
| XmnI | GAANNNNTTC | 3 cut(s) | 155, 869, 2155 |
| XspI | CTAG | 8 cut(s) | 99, 167, 741, 2298, 2451, 2724, 2885, 2915 |
| ZrmI | AGTACT | 1 cut(s) | 112 |
| Zsp2I | ATGCAT | 2 cut(s) | 438, 3133 |