Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19220 AT5G20730 AT5G20730 AT5G20730 |
| fragaria_vesca | FvH4_1g09150 FvH4_1g09150 FvH4_1g09150 |
| malus_domestica | MD02G1096700.v1.1 MD15G1221400.v1.1 |
| prunus_persica | Prupe.7G194200_v2.0.a1 Prupe.7G194200_v2.0.a1 |
| pyrus_communis | pycom02g07670 |
| rosa_chinensis | RchiOBHm_Chr2g0095551 |
| rosa_laevigata | RLG00000016578 |
| rosa_multiflora | Rmu_sc0005382.1_g000007 Rmu_sc0038699.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00146200 |
| rosa_rugosa | Rorug02G0052300 |
| rosa_samantha | Rh2AG100100 Rh2BG101600 Rh2CG103700 Rh2DG101000 |
| rosa_wichuraiana | Rw2G007600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 638, 3174 |
| AarI | CACCTGC | 2 cut(s) | 493, 576 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 910 |
| Acc36I | ACCTGC | 3 cut(s) | 493, 576, 2620 |
| Acc65I | GGTACC | 1 cut(s) | 829 |
| AccB1I | GGYRCC | 3 cut(s) | 564, 829, 2875 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1185 |
| AccI | GTMKAC | 2 cut(s) | 276, 860 |
| AciI | CCGC | 3 cut(s) | 1690, 1706, 2346 |
| AclWI | GGATC | 7 cut(s) | 1352, 1849, 1993, 3148, 3233, 3282, 3302 |
| AcsI | RAATTY | 4 cut(s) | 741, 979, 1867, 1963 |
| AcuI | CTGAAG | 4 cut(s) | 18, 927, 983, 2409 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 17, 113, 931, 1185, 1190, 1315, 1328 |
| AhlI | ACTAGT | 1 cut(s) | 3262 |
| AjnI | CCWGG | 7 cut(s) | 489, 1234, 1402, 1858, 3031, 3096, 3393 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 612, 644 |
| Alw21I | GWGCWC | 4 cut(s) | 410, 1219, 3041, 3192 |
| Alw26I | GTCTC | 7 cut(s) | 173, 896, 1719, 2325, 2487, 2960, 3384 |
| AlwI | GGATC | 7 cut(s) | 1352, 1849, 1993, 3148, 3233, 3282, 3302 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1567, 1630, 2017, 2612 |
| Ama87I | CYCGRG | 1 cut(s) | 2095 |
| AoxI | GGCC | 7 cut(s) | 89, 142, 343, 1034, 1330, 1472, 1861 |
| ApoI | RAATTY | 4 cut(s) | 741, 979, 1867, 1963 |
| AseI | ATTAAT | 1 cut(s) | 60 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 61, 452, 1166, 2473 |
| Asp718I | GGTACC | 1 cut(s) | 829 |
| AspLEI | GCGC | 3 cut(s) | 993, 1402, 3460 |
| AspS9I | GGNCC | 6 cut(s) | 89, 343, 1318, 1473, 2498, 2687 |
| AsuC2I | CCSGG | 1 cut(s) | 1131 |
| AsuHPI | GGTGA | 3 cut(s) | 1040, 3157, 3314 |
| AsuII | TTCGAA | 1 cut(s) | 2656 |
| AsuNHI | GCTAGC | 1 cut(s) | 2768 |
| AvaI | CYCGRG | 1 cut(s) | 2095 |
| AvaII | GGWCC | 3 cut(s) | 1318, 2498, 2687 |
| BaeGI | GKGCMC | 1 cut(s) | 938 |
| BanI | GGYRCC | 3 cut(s) | 564, 829, 2875 |
| BanII | GRGCYC | 1 cut(s) | 3192 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 349, 381 |
| BauI | CACGAG | 1 cut(s) | 403 |
| BbsI | GAAGAC | 1 cut(s) | 2837 |
| Bbv12I | GWGCWC | 4 cut(s) | 410, 1219, 3041, 3192 |
| BceAI | ACGGC | 3 cut(s) | 1049, 1802, 3445 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 718, 752 |
| BciT130I | CCWGG | 7 cut(s) | 491, 1236, 1404, 1860, 3033, 3098, 3395 |
| BciVI | GTATCC | 1 cut(s) | 955 |
| BclI | TGATCA | 1 cut(s) | 2722 |
| BcnI | CCSGG | 1 cut(s) | 1131 |
| BcoDI | GTCTC | 7 cut(s) | 173, 896, 1719, 2325, 2487, 2960, 3384 |
| BcuI | ACTAGT | 1 cut(s) | 3262 |
| BfaI | CTAG | 9 cut(s) | 396, 464, 836, 1038, 2616, 2769, 3203, 3233, 3263 |
| BfmI | CTRYAG | 6 cut(s) | 753, 1568, 1724, 2186, 3424, 3477 |
| BfoI | RGCGCY | 1 cut(s) | 3461 |
| BfuAI | ACCTGC | 3 cut(s) | 493, 576, 2620 |
| BfuI | GTATCC | 1 cut(s) | 955 |
| BglII | AGATCT | 1 cut(s) | 450 |
| BlpI | GCTNAGC | 1 cut(s) | 2342 |
| BmcAI | AGTACT | 1 cut(s) | 1351 |
| Bme1390I | CCNGG | 8 cut(s) | 491, 1131, 1236, 1404, 1860, 3033, 3098, 3395 |
| Bme18I | GGWCC | 3 cut(s) | 1318, 2498, 2687 |
| BmeT110I | CYCGRG | 1 cut(s) | 2095 |
| BmgT120I | GGNCC | 6 cut(s) | 89, 343, 1318, 1473, 2498, 2687 |
| BmiI | GGNNCC | 8 cut(s) | 9, 566, 831, 1320, 1475, 2022, 2688, 2877 |
| BmrFI | CCNGG | 8 cut(s) | 491, 1131, 1236, 1404, 1860, 3033, 3098, 3395 |
| BmsI | GCATC | 8 cut(s) | 173, 341, 1125, 2163, 2335, 2394, 2755, 3143 |
| BmtI | GCTAGC | 1 cut(s) | 2772 |
| BpiI | GAAGAC | 1 cut(s) | 2837 |
| BpmI | CTGGAG | 8 cut(s) | 93, 639, 1371, 1490, 1652, 1988, 2906, 3087 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3191 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2342 |
| Bpu14I | TTCGAA | 1 cut(s) | 2656 |
| BpuEI | CTTGAG | 3 cut(s) | 123, 332, 3025 |
| BpuMI | CCSGG | 1 cut(s) | 1131 |
| BsaI | GGTCTC | 1 cut(s) | 3384 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 612, 642, 1488, 1518 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 17, 113, 931, 1185, 1190, 1315, 1328 |
| Bse118I | RCCGGY | 1 cut(s) | 1328 |
| Bse3DI | GCAATG | 3 cut(s) | 245, 3085, 3406 |
| BseBI | CCWGG | 7 cut(s) | 491, 1236, 1404, 1860, 3033, 3098, 3395 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 17, 113, 931, 1185, 1190, 1315, 1328 |
| BseMI | GCAATG | 3 cut(s) | 245, 3085, 3406 |
| BseRI | GAGGAG | 2 cut(s) | 1086, 3332 |
| BseSI | GKGCMC | 1 cut(s) | 938 |
| BseYI | CCCAGC | 4 cut(s) | 86, 1893, 1935, 2675 |
| BsgI | GTGCAG | 2 cut(s) | 1271, 2153 |
| BshFI | GGCC | 7 cut(s) | 91, 144, 345, 1036, 1332, 1474, 1863 |
| BshNI | GGYRCC | 3 cut(s) | 564, 829, 2875 |
| BsiHKAI | GWGCWC | 4 cut(s) | 410, 1219, 3041, 3192 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2095 |
| BsiSI | CCGG | 2 cut(s) | 1130, 1329 |
| BsiWI | CGTACG | 1 cut(s) | 3462 |
| BslFI | GGGAC | 4 cut(s) | 1304, 2527, 2700, 3395 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 17, 113, 931, 1185, 1190, 1315, 1328 |
| BsmAI | GTCTC | 7 cut(s) | 173, 896, 1719, 2325, 2487, 2960, 3384 |
| BsmBI | CGTCTC | 1 cut(s) | 2487 |
| BsmFI | GGGAC | 4 cut(s) | 1304, 2527, 2700, 3395 |
| BsmI | GAATGC | 1 cut(s) | 1168 |
| BsnI | GGCC | 7 cut(s) | 91, 144, 345, 1036, 1332, 1474, 1863 |
| Bso31I | GGTCTC | 1 cut(s) | 3384 |
| BsoBI | CYCGRG | 1 cut(s) | 2095 |
| Bsp119I | TTCGAA | 1 cut(s) | 2656 |
| Bsp1286I | GDGCHC | 5 cut(s) | 410, 938, 1219, 3041, 3192 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2342 |
| Bsp19I | CCATGG | 2 cut(s) | 1314, 3311 |
| BspACI | CCGC | 3 cut(s) | 1690, 1706, 2346 |
| BspANI | GGCC | 7 cut(s) | 91, 144, 345, 1036, 1332, 1474, 1863 |
| BspHI | TCATGA | 1 cut(s) | 3277 |
| BspLI | GGNNCC | 8 cut(s) | 9, 566, 831, 1320, 1475, 2022, 2688, 2877 |
| BspMAI | CTGCAG | 4 cut(s) | 757, 1572, 1728, 3481 |
| BspMI | ACCTGC | 3 cut(s) | 493, 576, 2620 |
| BspOI | GCTAGC | 1 cut(s) | 2772 |
| BspPI | GGATC | 7 cut(s) | 1352, 1849, 1993, 3148, 3233, 3282, 3302 |
| BspT104I | TTCGAA | 1 cut(s) | 2656 |
| BspT107I | GGYRCC | 3 cut(s) | 564, 829, 2875 |
| BspTNI | GGTCTC | 1 cut(s) | 3384 |
| BsrDI | GCAATG | 3 cut(s) | 245, 3085, 3406 |
| BsrFI | RCCGGY | 1 cut(s) | 1328 |
| BssAI | RCCGGY | 1 cut(s) | 1328 |
| BssNAI | GTATAC | 1 cut(s) | 861 |
| BssSI | CACGAG | 1 cut(s) | 403 |
| BssT1I | CCWWGG | 4 cut(s) | 803, 1184, 1314, 3311 |
| Bst1107I | GTATAC | 1 cut(s) | 861 |
| Bst2BI | CACGAG | 1 cut(s) | 403 |
| Bst2UI | CCWGG | 7 cut(s) | 491, 1236, 1404, 1860, 3033, 3098, 3395 |
| Bst6I | CTCTTC | 5 cut(s) | 617, 709, 903, 1205, 1957 |
| BstAPI | GCANNNNNTGC | 8 cut(s) | 761, 1516, 1567, 1579, 1630, 1912, 2089, 2612 |
| BstBI | TTCGAA | 1 cut(s) | 2656 |
| BstDSI | CCRYGG | 2 cut(s) | 1314, 3311 |
| BstH2I | RGCGCY | 1 cut(s) | 3461 |
| BstHHI | GCGC | 3 cut(s) | 993, 1402, 3460 |
| BstMAI | GTCTC | 7 cut(s) | 173, 896, 1719, 2325, 2487, 2960, 3384 |
| BstNI | CCWGG | 7 cut(s) | 491, 1236, 1404, 1860, 3033, 3098, 3395 |
| BstNSI | RCATGY | 8 cut(s) | 80, 232, 254, 733, 883, 1267, 2104, 3214 |
| BstSCI | CCNGG | 8 cut(s) | 489, 1129, 1234, 1402, 1858, 3031, 3096, 3393 |
| BstSFI | CTRYAG | 6 cut(s) | 753, 1568, 1724, 2186, 3424, 3477 |
| BstSLI | GKGCMC | 1 cut(s) | 938 |
| BstV2I | GAAGAC | 1 cut(s) | 2837 |
| BstX2I | RGATCY | 4 cut(s) | 450, 1854, 3140, 3238 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2590 |
| BstYI | RGATCY | 4 cut(s) | 450, 1854, 3140, 3238 |
| BstZ17I | GTATAC | 1 cut(s) | 861 |
| BsuI | GTATCC | 1 cut(s) | 955 |
| BsuRI | GGCC | 7 cut(s) | 91, 144, 345, 1036, 1332, 1474, 1863 |
| BtgI | CCRYGG | 2 cut(s) | 1314, 3311 |
| BtgZI | GCGATG | 1 cut(s) | 869 |
| BtsI | GCAGTG | 3 cut(s) | 992, 1259, 2078 |
| BveI | ACCTGC | 3 cut(s) | 493, 576, 2620 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1567, 1630, 2017, 2612 |
| CciI | TCATGA | 1 cut(s) | 3277 |
| CfoI | GCGC | 3 cut(s) | 993, 1402, 3460 |
| Cfr10I | RCCGGY | 1 cut(s) | 1328 |
| Cfr13I | GGNCC | 6 cut(s) | 89, 343, 1318, 1473, 2498, 2687 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 910 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 910 |
| Eam1104I | CTCTTC | 5 cut(s) | 617, 709, 903, 1205, 1957 |
| EarI | CTCTTC | 5 cut(s) | 617, 709, 903, 1205, 1957 |
| Ecl136II | GAGCTC | 1 cut(s) | 3190 |
| Eco130I | CCWWGG | 4 cut(s) | 803, 1184, 1314, 3311 |
| Eco24I | GRGCYC | 1 cut(s) | 3192 |
| Eco31I | GGTCTC | 1 cut(s) | 3384 |
| Eco47I | GGWCC | 3 cut(s) | 1318, 2498, 2687 |
| Eco53kI | GAGCTC | 1 cut(s) | 3190 |
| Eco57I | CTGAAG | 4 cut(s) | 18, 927, 983, 2409 |
| Eco88I | CYCGRG | 1 cut(s) | 2095 |
| EcoICRI | GAGCTC | 1 cut(s) | 3190 |
| EcoRI | GAATTC | 2 cut(s) | 741, 1963 |
| EcoRII | CCWGG | 7 cut(s) | 489, 1234, 1402, 1858, 3031, 3096, 3393 |
| EcoT14I | CCWWGG | 4 cut(s) | 803, 1184, 1314, 3311 |
| EcoT22I | ATGCAT | 4 cut(s) | 230, 735, 3158, 3451 |
| EcoT38I | GRGCYC | 1 cut(s) | 3192 |
| ErhI | CCWWGG | 4 cut(s) | 803, 1184, 1314, 3311 |
| Esp3I | CGTCTC | 1 cut(s) | 2487 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 858, 890 |
| FaqI | GGGAC | 4 cut(s) | 1304, 2527, 2700, 3395 |
| FauI | CCCGC | 1 cut(s) | 1683 |
| FauNDI | CATATG | 1 cut(s) | 1088 |
| FbaI | TGATCA | 1 cut(s) | 2722 |
| FblI | GTMKAC | 2 cut(s) | 276, 860 |
| FriOI | GRGCYC | 1 cut(s) | 3192 |
| FspBI | CTAG | 9 cut(s) | 396, 464, 836, 1038, 2616, 2769, 3203, 3233, 3263 |
| GlaI | GCGC | 3 cut(s) | 992, 1401, 3459 |
| GsaI | CCCAGC | 4 cut(s) | 90, 1897, 1939, 2679 |
| GsuI | CTGGAG | 8 cut(s) | 93, 639, 1371, 1490, 1652, 1988, 2906, 3087 |
| HaeII | RGCGCY | 1 cut(s) | 3461 |
| HaeIII | GGCC | 7 cut(s) | 91, 144, 345, 1036, 1332, 1474, 1863 |
| HapII | CCGG | 2 cut(s) | 1130, 1329 |
| HhaI | GCGC | 3 cut(s) | 993, 1402, 3460 |
| Hin6I | GCGC | 3 cut(s) | 991, 1400, 3458 |
| HinP1I | GCGC | 3 cut(s) | 991, 1400, 3458 |
| HincII | GTYRAC | 1 cut(s) | 554 |
| HindII | GTYRAC | 1 cut(s) | 554 |
| HindIII | AAGCTT | 1 cut(s) | 2733 |
| HpaII | CCGG | 2 cut(s) | 1130, 1329 |
| HphI | GGTGA | 3 cut(s) | 1040, 3157, 3314 |
| Hpy166II | GTNNAC | 8 cut(s) | 130, 277, 304, 554, 861, 1031, 1948, 1977 |
| Hpy8I | GTNNAC | 8 cut(s) | 130, 277, 304, 554, 861, 1031, 1948, 1977 |
| Hpy99I | CGWCG | 1 cut(s) | 438 |
| HpyAV | CCTTC | 9 cut(s) | 21, 35, 218, 310, 375, 825, 2483, 2529, 3218 |
| HpyCH4IV | ACGT | 1 cut(s) | 530 |
| HpySE526I | ACGT | 1 cut(s) | 530 |
| HspAI | GCGC | 3 cut(s) | 991, 1400, 3458 |
| KpnI | GGTACC | 1 cut(s) | 833 |
| Ksp22I | TGATCA | 1 cut(s) | 2722 |
| LweI | GCATC | 8 cut(s) | 173, 341, 1125, 2163, 2335, 2394, 2755, 3143 |
| MaeI | CTAG | 9 cut(s) | 396, 464, 836, 1038, 2616, 2769, 3203, 3233, 3263 |
| MaeII | ACGT | 1 cut(s) | 530 |
| MfeI | CAATTG | 2 cut(s) | 1910, 2084 |
| MflI | RGATCY | 4 cut(s) | 450, 1854, 3140, 3238 |
| MhlI | GDGCHC | 5 cut(s) | 410, 938, 1219, 3041, 3192 |
| MlyI | GAGTC | 7 cut(s) | 283, 603, 920, 1642, 1721, 1988, 2900 |
| MmeI | TCCRAC | 8 cut(s) | 94, 319, 563, 985, 1176, 1349, 2455, 2709 |
| Mph1103I | ATGCAT | 4 cut(s) | 230, 735, 3158, 3451 |
| MroXI | GAANNNNTTC | 4 cut(s) | 61, 452, 1166, 2473 |
| MseI | TTAA | 6 cut(s) | 60, 1241, 1415, 2661, 3074, 3489 |
| MslI | CAYNNNNRTG | 3 cut(s) | 81, 519, 3282 |
| MspA1I | CMGCKG | 7 cut(s) | 443, 1025, 1289, 1567, 1630, 1690, 1723 |
| MspI | CCGG | 2 cut(s) | 1130, 1329 |
| MspR9I | CCNGG | 8 cut(s) | 491, 1131, 1236, 1404, 1860, 3033, 3098, 3395 |
| MunI | CAATTG | 2 cut(s) | 1910, 2084 |
| Mva1269I | GAATGC | 1 cut(s) | 1168 |
| MvaI | CCWGG | 7 cut(s) | 491, 1236, 1404, 1860, 3033, 3098, 3395 |
| NciI | CCSGG | 1 cut(s) | 1131 |
| NcoI | CCATGG | 2 cut(s) | 1314, 3311 |
| NdeI | CATATG | 1 cut(s) | 1088 |
| NheI | GCTAGC | 1 cut(s) | 2768 |
| NlaIV | GGNNCC | 8 cut(s) | 9, 566, 831, 1320, 1475, 2022, 2688, 2877 |
| NmeAIII | GCCGAG | 1 cut(s) | 1067 |
| NmuCI | GTSAC | 7 cut(s) | 241, 398, 1465, 2142, 2409, 3163, 3434 |
| NsiI | ATGCAT | 4 cut(s) | 230, 735, 3158, 3451 |
| NspI | RCATGY | 8 cut(s) | 80, 232, 254, 733, 883, 1267, 2104, 3214 |
| NspV | TTCGAA | 1 cut(s) | 2656 |
| PaeI | GCATGC | 5 cut(s) | 80, 232, 254, 733, 883 |
| PaeR7I | CTCGAG | 1 cut(s) | 2095 |
| PagI | TCATGA | 1 cut(s) | 3277 |
| PaqCI | CACCTGC | 2 cut(s) | 493, 576 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1039 |
| PctI | GAATGC | 1 cut(s) | 1168 |
| PdmI | GAANNNNTTC | 4 cut(s) | 61, 452, 1166, 2473 |
| PfeI | GAWTC | 6 cut(s) | 623, 885, 1016, 1148, 2566, 2597 |
| Pfl23II | CGTACG | 1 cut(s) | 3462 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1185 |
| PleI | GAGTC | 7 cut(s) | 283, 603, 919, 1642, 1720, 1988, 2900 |
| PpsI | GAGTC | 7 cut(s) | 283, 603, 919, 1642, 1720, 1988, 2900 |
| PshBI | ATTAAT | 1 cut(s) | 60 |
| PsiI | TTATAA | 2 cut(s) | 638, 3174 |
| Psp124BI | GAGCTC | 1 cut(s) | 3192 |
| Psp6I | CCWGG | 7 cut(s) | 489, 1234, 1402, 1858, 3031, 3096, 3393 |
| PspFI | CCCAGC | 4 cut(s) | 86, 1893, 1935, 2675 |
| PspGI | CCWGG | 7 cut(s) | 489, 1234, 1402, 1858, 3031, 3096, 3393 |
| PspLI | CGTACG | 1 cut(s) | 3462 |
| PspN4I | GGNNCC | 8 cut(s) | 9, 566, 831, 1320, 1475, 2022, 2688, 2877 |
| PspPI | GGNCC | 6 cut(s) | 89, 343, 1318, 1473, 2498, 2687 |
| PspXI | VCTCGAGB | 1 cut(s) | 2095 |
| PstI | CTGCAG | 4 cut(s) | 757, 1572, 1728, 3481 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1567, 1630, 2017, 2612 |
| PsuI | RGATCY | 4 cut(s) | 450, 1854, 3140, 3238 |
| PvuII | CAGCTG | 6 cut(s) | 443, 1025, 1289, 1567, 1630, 1723 |
| RseI | CAYNNNNRTG | 3 cut(s) | 81, 519, 3282 |
| SacI | GAGCTC | 1 cut(s) | 3192 |
| SaqAI | TTAA | 6 cut(s) | 60, 1241, 1415, 2661, 3074, 3489 |
| Sau96I | GGNCC | 6 cut(s) | 89, 343, 1318, 1473, 2498, 2687 |
| ScaI | AGTACT | 1 cut(s) | 1351 |
| SchI | GAGTC | 7 cut(s) | 283, 603, 920, 1642, 1721, 1988, 2900 |
| ScrFI | CCNGG | 8 cut(s) | 491, 1131, 1236, 1404, 1860, 3033, 3098, 3395 |
| SduI | GDGCHC | 5 cut(s) | 410, 938, 1219, 3041, 3192 |
| SfaNI | GCATC | 8 cut(s) | 173, 341, 1125, 2163, 2335, 2394, 2755, 3143 |
| SfcI | CTRYAG | 6 cut(s) | 753, 1568, 1724, 2186, 3424, 3477 |
| Sfr274I | CTCGAG | 1 cut(s) | 2095 |
| SfuI | TTCGAA | 1 cut(s) | 2656 |
| SinI | GGWCC | 3 cut(s) | 1318, 2498, 2687 |
| SlaI | CTCGAG | 1 cut(s) | 2095 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 81, 519, 3282 |
| SmlI | CTYRAG | 4 cut(s) | 138, 347, 2095, 3040 |
| SmoI | CTYRAG | 4 cut(s) | 138, 347, 2095, 3040 |
| SpeI | ACTAGT | 1 cut(s) | 3262 |
| SphI | GCATGC | 5 cut(s) | 80, 232, 254, 733, 883 |
| SsiI | CCGC | 3 cut(s) | 1690, 1706, 2346 |
| SspI | AATATT | 1 cut(s) | 2863 |
| SspMI | CTAG | 9 cut(s) | 396, 464, 836, 1038, 2616, 2769, 3203, 3233, 3263 |
| SstI | GAGCTC | 1 cut(s) | 3192 |
| StyD4I | CCNGG | 8 cut(s) | 489, 1129, 1234, 1402, 1858, 3031, 3096, 3393 |
| StyI | CCWWGG | 4 cut(s) | 803, 1184, 1314, 3311 |
| TaiI | ACGT | 1 cut(s) | 533 |
| TaqI | TCGA | 6 cut(s) | 436, 547, 970, 1226, 2096, 2656 |
| TatI | WGTACW | 5 cut(s) | 129, 843, 1349, 2113, 3367 |
| TfiI | GAWTC | 6 cut(s) | 623, 885, 1016, 1148, 2566, 2597 |
| Tru1I | TTAA | 6 cut(s) | 60, 1241, 1415, 2661, 3074, 3489 |
| Tru9I | TTAA | 6 cut(s) | 60, 1241, 1415, 2661, 3074, 3489 |
| TseFI | GTSAC | 7 cut(s) | 241, 398, 1465, 2142, 2409, 3163, 3434 |
| Tsp45I | GTSAC | 7 cut(s) | 241, 398, 1465, 2142, 2409, 3163, 3434 |
| TspGWI | ACGGA | 3 cut(s) | 201, 415, 3349 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1185 |
| VpaK11BI | GGWCC | 3 cut(s) | 1318, 2498, 2687 |
| VspI | ATTAAT | 1 cut(s) | 60 |
| XapI | RAATTY | 4 cut(s) | 741, 979, 1867, 1963 |
| XbaI | TCTAGA | 1 cut(s) | 463 |
| XceI | RCATGY | 8 cut(s) | 80, 232, 254, 733, 883, 1267, 2104, 3214 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 872, 1467, 2806 |
| XhoI | CTCGAG | 1 cut(s) | 2095 |
| XmiI | GTMKAC | 2 cut(s) | 276, 860 |
| XmnI | GAANNNNTTC | 4 cut(s) | 61, 452, 1166, 2473 |
| XspI | CTAG | 9 cut(s) | 396, 464, 836, 1038, 2616, 2769, 3203, 3233, 3263 |
| ZrmI | AGTACT | 1 cut(s) | 1351 |
| Zsp2I | ATGCAT | 4 cut(s) | 230, 735, 3158, 3451 |