Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008380

Physical Location & Seq

Genomic Coordinates Reverse (-)

17922734 .. 17929649

Gene Structure 6916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1221400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3450 bp

ATGAAGGTTCCCACAAATGGGTTTATGGAAAATTCTGGGGAAGGAGAACAGAAGAGAATTAATTCAGAGTTATGGCATGCTTGTGCTGGGCCATTGGTTTCTTTGCCTCCAGTTGGAAGTCTTGTGGTGTACTTCCCTCAAGGTCACAGCGAGCAAGTTGCAGCATCAATGCAAAAGGAGACTGATTTCATACCGAACTACCCCAACCTTCCGTCAAAATTGATATGCATGCTTCACAATGTGACATTGCATGCTGATACCGAAACAGATGAGGTCTATGCACAAATGACTCTCCAACCAGTAAACAAATATGAGAAGGAAGCATTACTGGCATCCGACATGGGGCTCAAGCAAAGTAAGCAACCTGCTGAGTTTTTCTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCTCGTCGAGCAGCTGAGAAGATCTTCCCACCTCTAGATTTTTCGATGCAACCGCCTGCTCAGGAGCTTGTTGCAAAAGATTTGCATGATAGTGCGTGGACATTCAGACATATCTATCGAGGCCAACCGAAAAGGCACCTGCTGACTACAGGTTGGAGTATTTTCGTTAGCACAAAAAGACTCTTTGCCGGAGATTCTGTTCTTTTTATAAGGGATGAAAAATCTCAGCTTCTCTTGGGCATAAGGCGTGCTAATAGACAGCAGCCAGCTATCTGTTCATCAGTCATATCCAGTGATAGCATGCATATCGGCATTCTTGCAGCCGCAGCTCATGCTGCTGCAAATAACAGCCCGTTTACCATATTTTACAACCCAAGGGCAAGCCCTTCTGAATTTGTGGTACCTTTAGCCAAGTACAATAAAGCGATGTATACCCAAGTTTCACTTGGCATGCGATTCAGAATGATGTTTGAGACTGAAGAGGCAGGAGTACGCAGATACATGGGCACAATCACTGGCATCAGTGATTTGGATCCTGTTCGATGGAAAGGTTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCAGGTGACCGGCCTAGCCGAGTTTCAATTTGGGAAATCGAGCCTGTTGTGACTCCTTTCTACATATGCCCTCCTCCATTTTTCAGACCCAAGTTTCCCAAACAACCAGGGATGCCAGATGATGAATCTGACATAGAGAATGCTTTCAAGAGAGCCATGCCTTGGCTTGGAGATGAATTTGGCATGAAGAATTCCCCAAGCTCGGTTTTCCCTGGTTTGAGTTTGATGCAGTGGATGAACATGCAACAAAATAATCAGTTTTCAGCTTCTCAGTCTGGATTTTTCCCATCCATGGTCCCTCCAACCGGCCTGCAAAATAACCTTGGTACAGATGATCCATCCAAGTTATTGAACTTTCAAGCCCCGGTGCTGTCTGCACCCGGTCTCCAGTCAAATAAATCAGCTCCACAAAACCAAGCTAGCCAAATGCAGCAGCCGAATGTGACATGGGCCCAACAGCAGCAGCTGCAGCAATTGATGCATAATCCTATGAGCCAACAGCAGCAAAGTAACCCCCAACAGCAGCAGCTGCATCAATTATTGAATTCTTCAGCGAACCAACATCAGCAAAATCACCCCCAGCAGCAGCTGCAGCAATTATTGCAGACACCAACGAACCAACAGCTCCAGAATTACTCCCATCAGCAGCAGCGGGAGCCTCAACAACAGCAAGACCCTCAAAACCTGCTGCAGCATCAGCAGCTGCACCAACAGCAACCGCAACGTCAACAGCACCAGCAACAACAATTATCTCAGCCGAATCCGGTAAATAACGGCTCTGTTGCTCCTAACCAGGTCCCGGGCCAAAATTTGCAACAACCAGTTATGTTCTCCCAACATCAACAGCAGCAATTACTAACAGGGAATACCCAATCCCAGCAAGCCGTCCATTCTTCTAGTAAGAATTCATTTCAGGTGCCAACTGGACAACAAAACTCACAGCTCCAGCAGCAGCAACTGGAACCGCAACCAGGCGTCTTACAAAGGCAGCAGCAGGTGTCACAATTGCAACCGTCCCCACAGCAATTCTTGCAACAGAACATGTCACAGAAAGTACAGCAGCAGCCGCAAGTACAGCAATCATCTCAGCAGGGCATCTCTGAGCAACAACTCCAATTACAGTTGCTACAGAAATTTCAGCAACAGCAGCAGCCGCAGTTACTCTCCCCATCAAGCTCACTTTTGCAGCCTCAACTCTTACAGCAGCAGCTGGCCCACCAACAAAACCAGCAGTTACAACAGTTGCCTATGACTCAGCATCATCAGCAACAGCTAAGTGGTAACAGCTTCTCAACGGACAGACTTCTGAACAACTTTGCAGCTCCTTCGGTCATGCAGTCTCATCATATGCCATCTATCCAGCCCCAGAACCAGCACAAGCCACTTACAGCAATCAGAAGCCATTCTGGTCTTACAGAAGGCGATGGTCCATCATGTTCAACCTCCCCTTCTACCAATAACTGCCAGATGTCCCCATCAAAATACTCGAACAGGAATCAGCAAGGAACCGCCATGTTGTTGGGGGATTCAGTGGCAGAACCTGCTCATAATTTGGTTCAGGAGCTTCAGAGCAAGTCTGATATTCGGATAAAAAATGAGCTGCCCAGCTCAAAAGGGCCAGACCAGATAAAATATAAAGGTACAATCACGGATCAGTTAGAAGCTTCATCATCTGGAACATCATATTGTCTGGATGCTAGCACAATCCATCAGAACTATGCACTCCCCACCTTCTGTTTGGATGGTGATGTTCAATCGAATCCTCGGAGCAGTCTTCCATTTTCCGCTAATATTGATGGATTGGCACCGGACACTTTGTTGTCAAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTGTCTAATTATGGCGGGACACCAAGAGATATTGAGATAGAGTTATCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGCACCAAACTTACCTTTCAAAACTGGGTGCTCAAGTGACATTCCCATAACTGATACTGGAGTTTTAGGCAACGGATTGTGGGCAAACCAGGCTCAACGAATGAGAACATATACAAAGGTTCAAAAGCGTGGATCTGTGGGAAGATGCATTGATGTCACCCGTTATAAAGGCTATGATGAACTCCGGCATGATCTTGCCCGCATGTTCGGGATTGAAGGGCAACTAGAAGATCCACACAGGACGGACTGGAAACTTGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGCGATGATCCATGGGAGGAGTTTGTGAGCTGTGTTCAGAGTATAAAGATATTGTCATCCGTTGAAGTACGGCAGATGAGCTTGGATGGAGATCTCGGCAACATTCCAGTCCCCAATCAAGCTTCTAGCGGAACTGACAGTGGAAATGCATGGAGACCTCAGTATGATGATAACTCTGCAGCCTCGTTTAATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

1150

Amino Acids

128.48

Weight (kDa)

6.36

Isoelectric Point (pI)

69.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	126 - 227	2.2e-20	B3 DNA binding domain
BRWD_AD	PF25313	254 - 357	2.6e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	275 - 357	1.1e-35	Auxin response factor ancillary domain
AUX_IAA	PF02309	1019 - 1107	2e-08	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19220 AT5G20730 AT5G20730 AT5G20730
fragaria_vesca	FvH4_1g09150 FvH4_1g09150 FvH4_1g09150
malus_domestica	MD02G1096700.v1.1 MD15G1221400.v1.1
prunus_persica	Prupe.7G194200_v2.0.a1 Prupe.7G194200_v2.0.a1
pyrus_communis	pycom02g07670
rosa_chinensis	RchiOBHm_Chr2g0095551
rosa_laevigata	RLG00000016578
rosa_multiflora	Rmu_sc0005382.1_g000007 Rmu_sc0038699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00146200
rosa_rugosa	Rorug02G0052300
rosa_samantha	Rh2AG100100 Rh2BG101600 Rh2CG103700 Rh2DG101000
rosa_wichuraiana	Rw2G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	638, 3126
AarI	CACCTGC	3 cut(s)	576, 1016, 2008
Acc36I	ACCTGC	6 cut(s)	373, 576, 1016, 1716, 2008, 2572
Acc65I	GGTACC	1 cut(s)	829
AccB1I	GGYRCC	5 cut(s)	564, 829, 1939, 2827, 2962
AccB7I	CCANNNNNTGG	1 cut(s)	1185
AccI	GTMKAC	1 cut(s)	860
AclWI	GGATC	8 cut(s)	956, 969, 1352, 2682, 3100, 3185, 3234, 3254
AcsI	RAATTY	8 cut(s)	31, 821, 1199, 1213, 1567, 1831, 1927, 2156
AcuI	CTGAAG	5 cut(s)	927, 983, 1557, 2573, 2858
AcyI	GRCGYC	1 cut(s)	1998
AdeI	CACNNNGTG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	2064
AjnI	CCWGG	5 cut(s)	1129, 1234, 1815, 1993, 3048
AloI	GAACNNNNNNTCC	2 cut(s)	612, 644
Alw21I	GWGCWC	1 cut(s)	2993
Alw26I	GTCTC	5 cut(s)	173, 896, 1412, 2367, 3400
AlwI	GGATC	8 cut(s)	956, 969, 1352, 2682, 3100, 3185, 3234, 3254
AlwNI	CAGNNNCTG	7 cut(s)	1489, 1552, 1612, 1726, 1981, 2233, 2564
Ama87I	CYCGRG	1 cut(s)	1822
AoxI	GGCC	8 cut(s)	89, 550, 1034, 1330, 1473, 1825, 2235, 2639
ApaI	GGGCCC	1 cut(s)	1477
ApoI	RAATTY	8 cut(s)	31, 821, 1199, 1213, 1567, 1831, 1927, 2156
AseI	ATTAAT	1 cut(s)	60
Asp700I	GAANNNNTTC	4 cut(s)	61, 452, 1166, 2425
Asp718I	GGTACC	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	993
AspS9I	GGNCC	9 cut(s)	89, 1318, 1473, 1474, 1819, 1825, 2236, 2450, 2639
AsuC2I	CCSGG	4 cut(s)	1388, 1404, 1823, 1824
AsuHPI	GGTGA	4 cut(s)	1040, 1589, 2780, 3109
AsuNHI	GCTAGC	2 cut(s)	1442, 2720
AvaI	CYCGRG	1 cut(s)	1822
AvaII	GGWCC	3 cut(s)	1318, 1819, 2450
BaeGI	GKGCMC	3 cut(s)	938, 1477, 2965
BaeI	ACNNNNGTAYC	2 cut(s)	3006, 3039
BamHI	GGATCC	1 cut(s)	961
BanI	GGYRCC	5 cut(s)	564, 829, 1939, 2827, 2962
BanII	GRGCYC	2 cut(s)	348, 1477
BbsI	GAAGAC	1 cut(s)	2789
Bbv12I	GWGCWC	1 cut(s)	2993
BceAI	ACGGC	3 cut(s)	1813, 1892, 3338
BcgI	CGANNNNNNTGC	6 cut(s)	140, 174, 718, 752, 2331, 2365
BciT130I	CCWGG	5 cut(s)	1131, 1236, 1817, 1995, 3050
BcnI	CCSGG	4 cut(s)	1388, 1404, 1823, 1824
BcoDI	GTCTC	5 cut(s)	173, 896, 1412, 2367, 3400
BfaI	CTAG	8 cut(s)	396, 464, 1038, 1443, 1920, 2721, 3185, 3378
BfmI	CTRYAG	6 cut(s)	576, 1490, 1613, 1712, 2150, 3429
BfuAI	ACCTGC	6 cut(s)	373, 576, 1016, 1716, 2008, 2572
BglII	AGATCT	3 cut(s)	450, 2869, 3343
Bme1390I	CCNGG	9 cut(s)	1131, 1236, 1388, 1404, 1817, 1823, 1824, 1995, 3050
Bme18I	GGWCC	3 cut(s)	1318, 1819, 2450
BmeT110I	CYCGRG	1 cut(s)	1822
BmgT120I	GGNCC	9 cut(s)	89, 1318, 1473, 1474, 1819, 1825, 2236, 2450, 2639
BmrFI	CCNGG	9 cut(s)	1131, 1236, 1388, 1404, 1817, 1823, 1824, 1995, 3050
BmrI	ACTGGG	1 cut(s)	2994
BmtI	GCTAGC	2 cut(s)	1446, 2724
BmuI	ACTGGG	1 cut(s)	2994
BpiI	GAAGAC	1 cut(s)	2789
BpmI	CTGGAG	5 cut(s)	93, 1394, 1634, 1952, 3039
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	3 cut(s)	123, 332, 2977
BpuMI	CCSGG	4 cut(s)	1388, 1404, 1823, 1824
BsaBI	GATNNNNATC	2 cut(s)	960, 3342
BsaHI	GRCGYC	1 cut(s)	1998
BsaI	GGTCTC	2 cut(s)	1412, 3400
BsaWI	WCCGGW	2 cut(s)	1786, 2830
BsaXI	ACNNNNNCTCC	4 cut(s)	612, 642, 1392, 1422
Bse118I	RCCGGY	2 cut(s)	1032, 1328
Bse3DI	GCAATG	1 cut(s)	245
Bse8I	GATNNNNATC	2 cut(s)	960, 3342
BseBI	CCWGG	5 cut(s)	1131, 1236, 1817, 1995, 3050
BseJI	GATNNNNATC	2 cut(s)	960, 3342
BseMI	GCAATG	1 cut(s)	245
BseRI	GAGGAG	2 cut(s)	1086, 3284
BseSI	GKGCMC	3 cut(s)	938, 1477, 2965
BseYI	CCCAGC	4 cut(s)	86, 1602, 1899, 2627
BsgI	GTGCAG	2 cut(s)	1383, 1712
BshFI	GGCC	8 cut(s)	91, 552, 1036, 1332, 1475, 1827, 2237, 2641
BshNI	GGYRCC	5 cut(s)	564, 829, 1939, 2827, 2962
BsiHKAI	GWGCWC	1 cut(s)	2993
BsiHKCI	CYCGRG	1 cut(s)	1822
BsiSI	CCGG	9 cut(s)	618, 1033, 1329, 1388, 1404, 1787, 1823, 2831, 3145
BslFI	GGGAC	6 cut(s)	1304, 1805, 2023, 2479, 2914, 3347
BsmAI	GTCTC	5 cut(s)	173, 896, 1412, 2367, 3400
BsmFI	GGGAC	6 cut(s)	1304, 1805, 2023, 2479, 2914, 3347
BsmI	GAATGC	2 cut(s)	741, 1168
BsnI	GGCC	8 cut(s)	91, 552, 1036, 1332, 1475, 1827, 2237, 2641
Bso31I	GGTCTC	2 cut(s)	1412, 3400
BsoBI	CYCGRG	1 cut(s)	1822
Bsp120I	GGGCCC	1 cut(s)	1473
Bsp1286I	GDGCHC	5 cut(s)	348, 938, 1477, 2965, 2993
Bsp19I	CCATGG	2 cut(s)	1314, 3263
BspANI	GGCC	8 cut(s)	91, 552, 1036, 1332, 1475, 1827, 2237, 2641
BspHI	TCATGA	1 cut(s)	3229
BspMAI	CTGCAG	4 cut(s)	1494, 1617, 1716, 3433
BspMI	ACCTGC	6 cut(s)	373, 576, 1016, 1716, 2008, 2572
BspOI	GCTAGC	2 cut(s)	1446, 2724
BspPI	GGATC	8 cut(s)	956, 969, 1352, 2682, 3100, 3185, 3234, 3254
BspT107I	GGYRCC	5 cut(s)	564, 829, 1939, 2827, 2962
BspTNI	GGTCTC	2 cut(s)	1412, 3400
BsrDI	GCAATG	1 cut(s)	245
BsrFI	RCCGGY	2 cut(s)	1032, 1328
BssAI	RCCGGY	2 cut(s)	1032, 1328
BssNAI	GTATAC	1 cut(s)	861
BssNI	GRCGYC	1 cut(s)	1998
BssT1I	CCWWGG	5 cut(s)	803, 1184, 1314, 1345, 3263
Bst1107I	GTATAC	1 cut(s)	861
Bst2UI	CCWGG	5 cut(s)	1131, 1236, 1817, 1995, 3050
Bst4CI	ACNGT	5 cut(s)	2037, 2145, 2265, 2886, 3392
Bst6I	CTCTTC	2 cut(s)	47, 903
BstACI	GRCGYC	1 cut(s)	1998
BstAPI	GCANNNNNTGC	8 cut(s)	761, 1489, 1501, 1552, 1612, 1624, 2053, 2564
BstDSI	CCRYGG	2 cut(s)	1314, 3263
BstEII	GGTNACC	1 cut(s)	1028
BstHHI	GCGC	1 cut(s)	993
BstMAI	GTCTC	5 cut(s)	173, 896, 1412, 2367, 3400
BstNI	CCWGG	5 cut(s)	1131, 1236, 1817, 1995, 3050
BstNSI	RCATGY	8 cut(s)	80, 232, 254, 733, 883, 1267, 2068, 3166
BstPI	GGTNACC	1 cut(s)	1028
BstSCI	CCNGG	9 cut(s)	1129, 1234, 1386, 1402, 1815, 1821, 1822, 1993, 3048
BstSFI	CTRYAG	6 cut(s)	576, 1490, 1613, 1712, 2150, 3429
BstSLI	GKGCMC	3 cut(s)	938, 1477, 2965
BstV2I	GAAGAC	1 cut(s)	2789
BstX2I	RGATCY	6 cut(s)	450, 961, 2869, 3092, 3190, 3343
BstXI	CCANNNNNNTGG	1 cut(s)	2542
BstYI	RGATCY	6 cut(s)	450, 961, 2869, 3092, 3190, 3343
BstZ17I	GTATAC	1 cut(s)	861
BsuRI	GGCC	8 cut(s)	91, 552, 1036, 1332, 1475, 1827, 2237, 2641
BtgI	CCRYGG	2 cut(s)	1314, 3263
BtgZI	GCGATG	3 cut(s)	869, 2460, 3270
BtsI	GCAGTG	2 cut(s)	1259, 2931
BtsIMutI	CAGTG	7 cut(s)	727, 942, 958, 1259, 2559, 2931, 3397
BveI	ACCTGC	6 cut(s)	373, 576, 1016, 1716, 2008, 2572
CaiI	CAGNNNCTG	7 cut(s)	1489, 1552, 1612, 1726, 1981, 2233, 2564
CciI	TCATGA	1 cut(s)	3229
CfoI	GCGC	1 cut(s)	993
Cfr10I	RCCGGY	2 cut(s)	1032, 1328
Cfr13I	GGNCC	9 cut(s)	89, 1318, 1473, 1474, 1819, 1825, 2236, 2450, 2639
Cfr9I	CCCGGG	1 cut(s)	1822
CseI	GACGC	1 cut(s)	1987
CsiI	ACCWGGT	1 cut(s)	1815
DraIII	CACNNNGTG	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	47, 903
EarI	CTCTTC	2 cut(s)	47, 903
Eco130I	CCWWGG	5 cut(s)	803, 1184, 1314, 1345, 3263
Eco24I	GRGCYC	2 cut(s)	348, 1477
Eco31I	GGTCTC	2 cut(s)	1412, 3400
Eco47I	GGWCC	3 cut(s)	1318, 1819, 2450
Eco57I	CTGAAG	5 cut(s)	927, 983, 1557, 2573, 2858
Eco88I	CYCGRG	1 cut(s)	1822
Eco91I	GGTNACC	1 cut(s)	1028
EcoO109I	RGGNCCY	1 cut(s)	1819
EcoO65I	GGTNACC	1 cut(s)	1028
EcoRI	GAATTC	3 cut(s)	1213, 1567, 1927
EcoRII	CCWGG	5 cut(s)	1129, 1234, 1815, 1993, 3048
EcoT14I	CCWWGG	5 cut(s)	803, 1184, 1314, 1345, 3263
EcoT22I	ATGCAT	5 cut(s)	230, 735, 1506, 3110, 3403
EcoT38I	GRGCYC	2 cut(s)	348, 1477
ErhI	CCWWGG	5 cut(s)	803, 1184, 1314, 1345, 3263
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FaqI	GGGAC	6 cut(s)	1304, 1805, 2023, 2479, 2914, 3347
FauI	CCCGC	3 cut(s)	1668, 2891, 3167
FauNDI	CATATG	2 cut(s)	1088, 2370
FblI	GTMKAC	1 cut(s)	860
FriOI	GRGCYC	2 cut(s)	348, 1477
FspBI	CTAG	8 cut(s)	396, 464, 1038, 1443, 1920, 2721, 3185, 3378
GlaI	GCGC	1 cut(s)	992
GsaI	CCCAGC	4 cut(s)	90, 1606, 1903, 2631
GsuI	CTGGAG	5 cut(s)	93, 1394, 1634, 1952, 3039
HaeIII	GGCC	8 cut(s)	91, 552, 1036, 1332, 1475, 1827, 2237, 2641
HapII	CCGG	9 cut(s)	618, 1033, 1329, 1388, 1404, 1787, 1823, 2831, 3145
HgaI	GACGC	1 cut(s)	1987
HhaI	GCGC	1 cut(s)	993
Hin1I	GRCGYC	1 cut(s)	1998
Hin6I	GCGC	1 cut(s)	991
HinP1I	GCGC	1 cut(s)	991
HincII	GTYRAC	1 cut(s)	1751
HindII	GTYRAC	1 cut(s)	1751
HindIII	AAGCTT	2 cut(s)	2685, 3372
HpaII	CCGG	9 cut(s)	618, 1033, 1329, 1388, 1404, 1787, 1823, 2831, 3145
HphI	GGTGA	4 cut(s)	1040, 1589, 2780, 3109
Hpy166II	GTNNAC	7 cut(s)	130, 304, 528, 786, 861, 983, 1751
Hpy8I	GTNNAC	7 cut(s)	130, 304, 528, 786, 861, 983, 1751
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	9 cut(s)	35, 218, 310, 825, 2358, 2435, 2481, 2764, 3170
HpyCH4III	ACNGT	5 cut(s)	2037, 2145, 2265, 2886, 3392
HpyCH4IV	ACGT	1 cut(s)	1747
HpySE526I	ACGT	1 cut(s)	1747
Hsp92I	GRCGYC	1 cut(s)	1998
HspAI	GCGC	1 cut(s)	991
KpnI	GGTACC	1 cut(s)	833
LmnI	GCTCC	9 cut(s)	493, 1432, 1653, 1678, 1813, 1971, 2350, 2584, 2790
MabI	ACCWGGT	1 cut(s)	1815
MaeI	CTAG	8 cut(s)	396, 464, 1038, 1443, 1920, 2721, 3185, 3378
MaeII	ACGT	1 cut(s)	1747
MfeI	CAATTG	2 cut(s)	1496, 2027
MflI	RGATCY	6 cut(s)	450, 961, 2869, 3092, 3190, 3343
MhlI	GDGCHC	5 cut(s)	348, 938, 1477, 2965, 2993
MlyI	GAGTC	5 cut(s)	283, 603, 1069, 2269, 2852
MmeI	TCCRAC	6 cut(s)	94, 319, 360, 563, 985, 1349
Mph1103I	ATGCAT	5 cut(s)	230, 735, 1506, 3110, 3403
MroXI	GAANNNNTTC	4 cut(s)	61, 452, 1166, 2425
MseI	TTAA	2 cut(s)	60, 3441
MslI	CAYNNNNRTG	3 cut(s)	81, 519, 3234
MspA1I	CMGCKG	7 cut(s)	443, 1489, 1552, 1612, 1675, 1726, 2233
MspI	CCGG	9 cut(s)	618, 1033, 1329, 1388, 1404, 1787, 1823, 2831, 3145
MspR9I	CCNGG	9 cut(s)	1131, 1236, 1388, 1404, 1817, 1823, 1824, 1995, 3050
MunI	CAATTG	2 cut(s)	1496, 2027
Mva1269I	GAATGC	2 cut(s)	741, 1168
MvaI	CCWGG	5 cut(s)	1131, 1236, 1817, 1995, 3050
NciI	CCSGG	4 cut(s)	1388, 1404, 1823, 1824
NcoI	CCATGG	2 cut(s)	1314, 3263
NdeI	CATATG	2 cut(s)	1088, 2370
NheI	GCTAGC	2 cut(s)	1442, 2720
NmeAIII	GCCGAG	2 cut(s)	1067, 3327
NsiI	ATGCAT	5 cut(s)	230, 735, 1506, 3110, 3403
NspI	RCATGY	8 cut(s)	80, 232, 254, 733, 883, 1267, 2068, 3166
PaeI	GCATGC	5 cut(s)	80, 232, 254, 733, 883
PagI	TCATGA	1 cut(s)	3229
PaqCI	CACCTGC	3 cut(s)	576, 1016, 2008
PciI	ACATGT	1 cut(s)	2064
PctI	GAATGC	2 cut(s)	741, 1168
PdmI	GAANNNNTTC	4 cut(s)	61, 452, 1166, 2425
PfeI	GAWTC	8 cut(s)	623, 885, 1016, 1148, 1783, 2518, 2549, 2782
PflMI	CCANNNNNTGG	1 cut(s)	1185
PleI	GAGTC	5 cut(s)	283, 603, 1069, 2269, 2852
PpsI	GAGTC	5 cut(s)	283, 603, 1069, 2269, 2852
PpuMI	RGGWCCY	1 cut(s)	1819
PscI	ACATGT	1 cut(s)	2064
PshBI	ATTAAT	1 cut(s)	60
PsiI	TTATAA	2 cut(s)	638, 3126
Psp5II	RGGWCCY	1 cut(s)	1819
Psp6I	CCWGG	5 cut(s)	1129, 1234, 1815, 1993, 3048
PspEI	GGTNACC	1 cut(s)	1028
PspFI	CCCAGC	4 cut(s)	86, 1602, 1899, 2627
PspGI	CCWGG	5 cut(s)	1129, 1234, 1815, 1993, 3048
PspOMI	GGGCCC	1 cut(s)	1473
PspPI	GGNCC	9 cut(s)	89, 1318, 1473, 1474, 1819, 1825, 2236, 2450, 2639
PspPPI	RGGWCCY	1 cut(s)	1819
PstI	CTGCAG	4 cut(s)	1494, 1617, 1716, 3433
PstNI	CAGNNNCTG	7 cut(s)	1489, 1552, 1612, 1726, 1981, 2233, 2564
PsuI	RGATCY	6 cut(s)	450, 961, 2869, 3092, 3190, 3343
PvuII	CAGCTG	6 cut(s)	443, 1489, 1552, 1612, 1726, 2233
RseI	CAYNNNNRTG	3 cut(s)	81, 519, 3234
SaqAI	TTAA	2 cut(s)	60, 3441
Sau96I	GGNCC	9 cut(s)	89, 1318, 1473, 1474, 1819, 1825, 2236, 2450, 2639
SchI	GAGTC	5 cut(s)	283, 603, 1069, 2269, 2852
ScrFI	CCNGG	9 cut(s)	1131, 1236, 1388, 1404, 1817, 1823, 1824, 1995, 3050
SduI	GDGCHC	5 cut(s)	348, 938, 1477, 2965, 2993
SexAI	ACCWGGT	1 cut(s)	1815
SfcI	CTRYAG	6 cut(s)	576, 1490, 1613, 1712, 2150, 3429
SinI	GGWCC	3 cut(s)	1318, 1819, 2450
SmaI	CCCGGG	1 cut(s)	1824
SmiMI	CAYNNNNRTG	3 cut(s)	81, 519, 3234
SmlI	CTYRAG	3 cut(s)	138, 347, 2992
SmoI	CTYRAG	3 cut(s)	138, 347, 2992
SphI	GCATGC	5 cut(s)	80, 232, 254, 733, 883
SspI	AATATT	1 cut(s)	2815
SspMI	CTAG	8 cut(s)	396, 464, 1038, 1443, 1920, 2721, 3185, 3378
StyD4I	CCNGG	9 cut(s)	1129, 1234, 1386, 1402, 1815, 1821, 1822, 1993, 3048
StyI	CCWWGG	5 cut(s)	803, 1184, 1314, 1345, 3263
TaaI	ACNGT	5 cut(s)	2037, 2145, 2265, 2886, 3392
TaiI	ACGT	1 cut(s)	1750
TaqI	TCGA	7 cut(s)	436, 473, 547, 970, 1062, 2510, 2780
TaqII	GACCGA	1 cut(s)	2341
TatI	WGTACW	4 cut(s)	129, 843, 2077, 2095
TauI	GCSGC	3 cut(s)	755, 2092, 2179
TfiI	GAWTC	8 cut(s)	623, 885, 1016, 1148, 1783, 2518, 2549, 2782
Tru1I	TTAA	2 cut(s)	60, 3441
Tru9I	TTAA	2 cut(s)	60, 3441
TscAI	CASTG	7 cut(s)	727, 949, 958, 1259, 2559, 2938, 3397
TspGWI	ACGGA	6 cut(s)	201, 2333, 2687, 3048, 3218, 3301
TspMI	CCCGGG	1 cut(s)	1822
TspRI	CASTG	7 cut(s)	727, 949, 958, 1259, 2559, 2938, 3397
Van91I	CCANNNNNTGG	1 cut(s)	1185
VpaK11BI	GGWCC	3 cut(s)	1318, 1819, 2450
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	8 cut(s)	31, 821, 1199, 1213, 1567, 1831, 1927, 2156
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	8 cut(s)	80, 232, 254, 733, 883, 1267, 2068, 3166
XcmI	CCANNNNNNNNNTGG	2 cut(s)	872, 2758
XmaI	CCCGGG	1 cut(s)	1822
XmiI	GTMKAC	1 cut(s)	860
XmnI	GAANNNNTTC	4 cut(s)	61, 452, 1166, 2425
XspI	CTAG	8 cut(s)	396, 464, 1038, 1443, 1920, 2721, 3185, 3378
Zsp2I	ATGCAT	5 cut(s)	230, 735, 1506, 3110, 3403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.