Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008380

Physical Location & Seq

Genomic Coordinates Forward (+)

4007643 .. 4009411

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGATGAAGTTTGCGGACTTGATTGATGAACACACAGAAGAACTAGCCGAGTTGGATACAGTTGATGCGGGGAAGTTGTTCAGTTCTGGCAAAGCCGCAGACATACCTCAGTGGAATTTTCCGAGCACCATGTTATCTGTTAAGGTCGCTCCTTCCTTAGCTGCTGGTTGCACCATGGTCATCAAACCAGCTGAGCAGACACCTTTTTCAGCTCTCTATTATGCTCATCTGGCCAAGTTGGCTGGTGTTCCTGATGGAGTGATTAATGTCATAACTGGATGTGCAGAGACTGCTGATGCGGCCATCACTCATCATATGGACATTGACAAAGTCAGTTTTACTGGTTCCACAGACGTAGGCCGTAAAGTGATGCAGGCTGCAGCAAAGAGCAACTTAAAAGCAGTTTCACTTGAACTAGGGGGCAAGTCACCCCTTTTAATTTTTGATGATGCTGATATAGATATGGCTGCTGACCTTGCTCTCTTGGGAATCCTCTACAACAAGGGAGAAACTTGTGTGGCAAGTTCTCGTGTTTTTGTTCAAGAAGGGATCTATGATGAACTTGTGAAGAAATTAGAAGTTGATAAGCAGCAGTTTGAGAAAGTCTTAACCAACACTGAGCATGGAAAAAGAGAAGGAGCCACTTCGTTAACAGGAGGCAAGCCTTTGGGGAACAAGGGATATTACATCGACCCAACAGTATTCACTGATGTCAAGGATGACATGCTCATAGCCAAGGATGAGATATTTGGACCTGTAGTGTCTGATGAAGTTCAAGGAAGTGTCCATTTTCCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

266

Amino Acids

28.5

Weight (kDa)

4.74

Isoelectric Point (pI)

19.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	32 - 192	2.1e-62	Aldehyde dehydrogenase family
Aldedh	PF00171	194 - 255	3.8e-16	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19220 AT5G20730 AT5G20730 AT5G20730
fragaria_vesca	FvH4_1g09150 FvH4_1g09150 FvH4_1g09150
malus_domestica	MD02G1096700.v1.1 MD15G1221400.v1.1
prunus_persica	Prupe.7G194200_v2.0.a1 Prupe.7G194200_v2.0.a1
pyrus_communis	pycom02g07670
rosa_chinensis	RchiOBHm_Chr2g0095551
rosa_laevigata	RLG00000016578
rosa_multiflora	Rmu_sc0005382.1_g000007 Rmu_sc0038699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00146200
rosa_rugosa	Rorug02G0052300
rosa_samantha	Rh2AG100100 Rh2BG101600 Rh2CG103700 Rh2DG101000
rosa_wichuraiana	Rw2G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	14, 68, 96, 299
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	2 cut(s)	231, 300
AcsI	RAATTY	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	413, 542, 776
AluBI	AGCT	3 cut(s)	161, 191, 212
AluI	AGCT	3 cut(s)	161, 191, 212
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	557
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	3 cut(s)	231, 300, 358
ApeKI	GCWGC	5 cut(s)	161, 377, 380, 467, 589
ApoI	RAATTY	1 cut(s)	115
AseI	ATTAAT	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	752
BalI	TGGCCA	1 cut(s)	233
BauI	CACGAG	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	5 cut(s)	148, 364, 392, 454, 601
BccI	CCATC	2 cut(s)	248, 311
BceAI	ACGGC	1 cut(s)	345
BciVI	GTATCC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	44, 416
BfmI	CTRYAG	2 cut(s)	378, 756
BfuI	GTATCC	1 cut(s)	49
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	7 cut(s)	96, 162, 300, 378, 381, 468, 590
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	7 cut(s)	97, 163, 301, 379, 382, 469, 591
Bme18I	GGWCC	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	2 cut(s)	346, 640
BmsI	GCATC	4 cut(s)	55, 286, 360, 439
Bpu10I	CCTNAGC	1 cut(s)	157
Bpu1102I	GCTNAGC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	174, 735
Bse1I	ACTGG	2 cut(s)	280, 346
BseDI	CCNNGG	2 cut(s)	174, 735
BseGI	GGATG	3 cut(s)	284, 724, 745
BseMII	CTCAG	3 cut(s)	122, 183, 609
BseNI	ACTGG	2 cut(s)	280, 346
BseXI	GCAGC	5 cut(s)	148, 364, 392, 454, 601
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	233, 302, 360
BsiHKAI	GWGCWC	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	233, 302, 360
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	549
Bsp1720I	GCTNAGC	1 cut(s)	192
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	4 cut(s)	14, 68, 96, 299
BspANI	GGCC	3 cut(s)	233, 302, 360
BspCNI	CTCAG	3 cut(s)	121, 184, 610
BspLI	GGNNCC	2 cut(s)	346, 640
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	280, 346
BssECI	CCNNGG	2 cut(s)	174, 735
BssMI	GATC	1 cut(s)	549
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	2 cut(s)	174, 735
Bst2BI	CACGAG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	61, 700
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	375, 662
BstDEI	CTNAG	4 cut(s)	108, 157, 192, 618
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	284, 724, 745
BstKTI	GATC	1 cut(s)	552
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	549
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 239, 290, 299, 476
BstNSI	RCATGY	1 cut(s)	727
BstSFI	CTRYAG	2 cut(s)	378, 756
BstV1I	GCAGC	5 cut(s)	148, 364, 392, 454, 601
BstX2I	RGATCY	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	549
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	3 cut(s)	233, 302, 360
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	284, 724, 745
BtsIMutI	CAGTG	3 cut(s)	116, 615, 705
Cac8I	GCNNGC	2 cut(s)	375, 662
CaiI	CAGNNNCTG	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	752
CviAII	CATG	4 cut(s)	130, 175, 623, 724
DdeI	CTNAG	4 cut(s)	108, 157, 192, 618
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
EaeI	YGGCCR	2 cut(s)	231, 300
Eco130I	CCWWGG	2 cut(s)	174, 735
Eco47I	GGWCC	1 cut(s)	752
EcoT14I	CCWWGG	2 cut(s)	174, 735
ErhI	CCWWGG	2 cut(s)	174, 735
FaeI	CATG	4 cut(s)	133, 178, 626, 727
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	4 cut(s)	129, 174, 622, 723
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	315
Fnu4HI	GCNGC	7 cut(s)	96, 162, 300, 378, 381, 468, 590
FokI	GGATG	3 cut(s)	291, 731, 752
Fsp4HI	GCNGC	7 cut(s)	96, 162, 300, 378, 381, 468, 590
FspBI	CTAG	2 cut(s)	44, 416
GluI	GCNGC	7 cut(s)	96, 162, 300, 378, 381, 468, 590
HaeIII	GGCC	3 cut(s)	233, 302, 360
Hin1II	CATG	4 cut(s)	133, 178, 626, 727
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HinfI	GANTC	1 cut(s)	489
HpaI	GTTAAC	1 cut(s)	651
HphI	GGTGA	1 cut(s)	420
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	2 cut(s)	123, 766
Hpy188III	TCNNGA	2 cut(s)	251, 542
Hpy8I	GTNNAC	1 cut(s)	651
HpyAV	CCTTC	3 cut(s)	162, 539, 629
HpyCH4III	ACNGT	2 cut(s)	61, 700
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	4 cut(s)	171, 284, 373, 380
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 239, 290, 299, 476
HpyF3I	CTNAG	4 cut(s)	108, 157, 192, 618
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	133, 178, 626, 727
KspAI	GTTAAC	1 cut(s)	651
Kzo9I	GATC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	154, 638
Lsp1109I	GCAGC	5 cut(s)	148, 364, 392, 454, 601
LweI	GCATC	4 cut(s)	55, 286, 360, 439
MaeI	CTAG	2 cut(s)	44, 416
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MboII	GAAGA	2 cut(s)	50, 580
MflI	RGATCY	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	128
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	3 cut(s)	115, 438, 572
MluNI	TGGCCA	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	117, 503, 650
Mox20I	TGGCCA	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	6 cut(s)	141, 264, 395, 437, 608, 650
Msp20I	TGGCCA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	191
MwoI	GCNNNNNNNGC	5 cut(s)	230, 239, 290, 299, 476
NcoI	CCATGG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	1 cut(s)	549
NlaIII	CATG	4 cut(s)	133, 178, 626, 727
NlaIV	GGNNCC	2 cut(s)	346, 640
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	426
NspI	RCATGY	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	489
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	7 cut(s)	97, 163, 301, 379, 382, 469, 591
PshBI	ATTAAT	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	346, 640
PspPI	GGNCC	1 cut(s)	752
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	549
PsyI	GACNNNGTC	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	191
SaqAI	TTAA	6 cut(s)	141, 264, 395, 437, 608, 650
SatI	GCNGC	7 cut(s)	96, 162, 300, 378, 381, 468, 590
Sau3AI	GATC	1 cut(s)	549
Sau96I	GGNCC	1 cut(s)	752
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	9 cut(s)	109, 147, 163, 193, 205, 214, 357, 477, 757
SfaNI	GCATC	4 cut(s)	55, 286, 360, 439
SfcI	CTRYAG	2 cut(s)	378, 756
SinI	GGWCC	1 cut(s)	752
Sse9I	AATT	3 cut(s)	115, 438, 572
SsiI	CCGC	4 cut(s)	14, 68, 96, 299
SspMI	CTAG	2 cut(s)	44, 416
StyI	CCWWGG	2 cut(s)	174, 735
TaaI	ACNGT	2 cut(s)	61, 700
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	690
TasI	AATT	3 cut(s)	115, 438, 572
TauI	GCSGC	2 cut(s)	98, 302
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	6 cut(s)	141, 264, 395, 437, 608, 650
Tru9I	TTAA	6 cut(s)	141, 264, 395, 437, 608, 650
TscAI	CASTG	3 cut(s)	116, 622, 712
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	5 cut(s)	161, 377, 380, 467, 589
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	4 cut(s)	20, 42, 573, 783
TspRI	CASTG	3 cut(s)	116, 622, 712
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	752
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	2 cut(s)	44, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.