Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19220 AT5G20730 AT5G20730 AT5G20730 |
| fragaria_vesca | FvH4_1g09150 FvH4_1g09150 FvH4_1g09150 |
| malus_domestica | MD02G1096700.v1.1 MD15G1221400.v1.1 |
| prunus_persica | Prupe.7G194200_v2.0.a1 Prupe.7G194200_v2.0.a1 |
| pyrus_communis | pycom02g07670 |
| rosa_chinensis | RchiOBHm_Chr2g0095551 |
| rosa_laevigata | RLG00000016578 |
| rosa_multiflora | Rmu_sc0005382.1_g000007 Rmu_sc0038699.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00146200 |
| rosa_rugosa | Rorug02G0052300 |
| rosa_samantha | Rh2AG100100 Rh2BG101600 Rh2CG103700 Rh2DG101000 |
| rosa_wichuraiana | Rw2G007600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 638, 3156 |
| AarI | CACCTGC | 1 cut(s) | 576 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 910 |
| Acc16I | TGCGCA | 1 cut(s) | 282 |
| Acc36I | ACCTGC | 1 cut(s) | 576 |
| Acc65I | GGTACC | 2 cut(s) | 829, 2693 |
| AccB1I | GGYRCC | 5 cut(s) | 564, 829, 2693, 2857, 3439 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1185, 1190 |
| AccI | GTMKAC | 2 cut(s) | 860, 3101 |
| AccII | CGCG | 3 cut(s) | 2774, 2818, 2993 |
| AciI | CCGC | 8 cut(s) | 1997, 2069, 2231, 2325, 2588, 2816, 2818, 3190 |
| AclI | AACGTT | 1 cut(s) | 3088 |
| AcsI | RAATTY | 6 cut(s) | 741, 1213, 1369, 1843, 1939, 1977 |
| AcuI | CTGAAG | 6 cut(s) | 18, 927, 983, 1859, 2135, 2888 |
| AcyI | GRCGYC | 1 cut(s) | 332 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 17, 87, 113, 1185, 1190, 1298, 1315 |
| AflIII | ACRYGT | 1 cut(s) | 2398 |
| AjnI | CCWGG | 6 cut(s) | 1129, 1234, 1381, 1396, 2517, 3013 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1828, 1860 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 612, 644 |
| Alw21I | GWGCWC | 2 cut(s) | 3023, 3174 |
| Alw26I | GTCTC | 4 cut(s) | 173, 896, 2304, 2942 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1480, 1606, 2251 |
| Ama87I | CYCGRG | 1 cut(s) | 802 |
| ApoI | RAATTY | 6 cut(s) | 741, 1213, 1369, 1843, 1939, 1977 |
| AscI | GGCGCGCC | 1 cut(s) | 2991 |
| AseI | ATTAAT | 1 cut(s) | 1616 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 452, 1166, 1943, 2455 |
| Asp718I | GGTACC | 2 cut(s) | 829, 2693 |
| AspLEI | GCGC | 6 cut(s) | 283, 490, 993, 2776, 2993, 2995 |
| AspS9I | GGNCC | 9 cut(s) | 89, 343, 807, 1464, 2254, 2392, 2480, 2674, 3082 |
| AsuHPI | GGTGA | 4 cut(s) | 1040, 2370, 2810, 3296 |
| AsuII | TTCGAA | 2 cut(s) | 215, 2638 |
| AsuNHI | GCTAGC | 1 cut(s) | 2750 |
| AvaI | CYCGRG | 1 cut(s) | 802 |
| AvaII | GGWCC | 2 cut(s) | 2480, 2674 |
| BaeGI | GKGCMC | 1 cut(s) | 3442 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 919, 952 |
| BamHI | GGATCC | 2 cut(s) | 961, 2578 |
| BanI | GGYRCC | 5 cut(s) | 564, 829, 2693, 2857, 3439 |
| BanII | GRGCYC | 1 cut(s) | 3174 |
| Bbv12I | GWGCWC | 2 cut(s) | 3023, 3174 |
| BceAI | ACGGC | 2 cut(s) | 1038, 1772 |
| BciT130I | CCWGG | 6 cut(s) | 1131, 1236, 1383, 1398, 2519, 3015 |
| BclI | TGATCA | 1 cut(s) | 2704 |
| BcoDI | GTCTC | 4 cut(s) | 173, 896, 2304, 2942 |
| BfaI | CTAG | 8 cut(s) | 396, 464, 1038, 2598, 2751, 3024, 3185, 3215 |
| BfmI | CTRYAG | 5 cut(s) | 753, 1481, 1607, 1718, 2240 |
| BfuAI | ACCTGC | 1 cut(s) | 576 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 562 |
| BglII | AGATCT | 3 cut(s) | 450, 2899, 3373 |
| BlpI | GCTNAGC | 1 cut(s) | 2321 |
| BmcAI | AGTACT | 1 cut(s) | 409 |
| Bme1390I | CCNGG | 6 cut(s) | 1131, 1236, 1383, 1398, 2519, 3015 |
| Bme18I | GGWCC | 2 cut(s) | 2480, 2674 |
| BmeT110I | CYCGRG | 1 cut(s) | 802 |
| BmgT120I | GGNCC | 9 cut(s) | 89, 343, 807, 1464, 2254, 2392, 2480, 2674, 3082 |
| BmrFI | CCNGG | 6 cut(s) | 1131, 1236, 1383, 1398, 2519, 3015 |
| BmsI | GCATC | 7 cut(s) | 173, 613, 1125, 2314, 2376, 2737, 3034 |
| BmtI | GCTAGC | 1 cut(s) | 2754 |
| BpmI | CTGGAG | 3 cut(s) | 93, 639, 3069 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3173 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2321 |
| Bpu14I | TTCGAA | 2 cut(s) | 215, 2638 |
| BpuEI | CTTGAG | 3 cut(s) | 123, 332, 1686 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3372 |
| BsaHI | GRCGYC | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 8 cut(s) | 803, 1130, 1184, 1234, 1314, 2816, 3014, 3293 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 612, 642 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 17, 87, 113, 1185, 1190, 1298, 1315 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3372 |
| BseBI | CCWGG | 6 cut(s) | 1131, 1236, 1383, 1398, 2519, 3015 |
| BseDI | CCNNGG | 8 cut(s) | 803, 1130, 1184, 1234, 1314, 2816, 3014, 3293 |
| BseJI | GATNNNNATC | 1 cut(s) | 3372 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 17, 87, 113, 1185, 1190, 1298, 1315 |
| BsePI | GCGCGC | 1 cut(s) | 2991 |
| BseRI | GAGGAG | 1 cut(s) | 3314 |
| BseSI | GKGCMC | 1 cut(s) | 3442 |
| BseYI | CCCAGC | 2 cut(s) | 86, 1911 |
| BsgI | GTGCAG | 3 cut(s) | 459, 1271, 1377 |
| Bsh1236I | CGCG | 3 cut(s) | 2774, 2818, 2993 |
| BshNI | GGYRCC | 5 cut(s) | 564, 829, 2693, 2857, 3439 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3023, 3174 |
| BsiHKCI | CYCGRG | 1 cut(s) | 802 |
| BslFI | GGGAC | 3 cut(s) | 2029, 2489, 2944 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 17, 87, 113, 1185, 1190, 1298, 1315 |
| BsmAI | GTCTC | 4 cut(s) | 173, 896, 2304, 2942 |
| BsmBI | CGTCTC | 1 cut(s) | 173 |
| BsmFI | GGGAC | 3 cut(s) | 2029, 2489, 2944 |
| BsmI | GAATGC | 2 cut(s) | 1168, 1885 |
| BsoBI | CYCGRG | 1 cut(s) | 802 |
| Bsp119I | TTCGAA | 2 cut(s) | 215, 2638 |
| Bsp1286I | GDGCHC | 3 cut(s) | 3023, 3174, 3442 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2321 |
| Bsp19I | CCATGG | 3 cut(s) | 1184, 1314, 3293 |
| BspACI | CCGC | 8 cut(s) | 1997, 2069, 2231, 2325, 2588, 2816, 2818, 3190 |
| BspFNI | CGCG | 3 cut(s) | 2774, 2818, 2993 |
| BspHI | TCATGA | 1 cut(s) | 2611 |
| BspMAI | CTGCAG | 4 cut(s) | 757, 1485, 1611, 1722 |
| BspMI | ACCTGC | 1 cut(s) | 576 |
| BspOI | GCTAGC | 1 cut(s) | 2754 |
| BspT104I | TTCGAA | 2 cut(s) | 215, 2638 |
| BspT107I | GGYRCC | 5 cut(s) | 564, 829, 2693, 2857, 3439 |
| BssECI | CCNNGG | 8 cut(s) | 803, 1130, 1184, 1234, 1314, 2816, 3014, 3293 |
| BssHII | GCGCGC | 1 cut(s) | 2991 |
| BssNAI | GTATAC | 2 cut(s) | 861, 3102 |
| BssNI | GRCGYC | 1 cut(s) | 332 |
| BssT1I | CCWWGG | 3 cut(s) | 1184, 1314, 3293 |
| Bst1107I | GTATAC | 2 cut(s) | 861, 3102 |
| Bst2UI | CCWGG | 6 cut(s) | 1131, 1236, 1383, 1398, 2519, 3015 |
| Bst6I | CTCTTC | 3 cut(s) | 709, 903, 2728 |
| BstACI | GRCGYC | 1 cut(s) | 332 |
| BstAPI | GCANNNNNTGC | 6 cut(s) | 761, 1480, 1492, 1606, 1618, 2059 |
| BstBI | TTCGAA | 2 cut(s) | 215, 2638 |
| BstDSI | CCRYGG | 4 cut(s) | 1184, 1314, 2816, 3293 |
| BstFNI | CGCG | 3 cut(s) | 2774, 2818, 2993 |
| BstHHI | GCGC | 6 cut(s) | 283, 490, 993, 2776, 2993, 2995 |
| BstMAI | GTCTC | 4 cut(s) | 173, 896, 2304, 2942 |
| BstNI | CCWGG | 6 cut(s) | 1131, 1236, 1383, 1398, 2519, 3015 |
| BstNSI | RCATGY | 7 cut(s) | 80, 254, 733, 883, 2402, 3004, 3196 |
| BstSCI | CCNGG | 6 cut(s) | 1129, 1234, 1381, 1396, 2517, 3013 |
| BstSFI | CTRYAG | 5 cut(s) | 753, 1481, 1607, 1718, 2240 |
| BstSLI | GKGCMC | 1 cut(s) | 3442 |
| BstUI | CGCG | 3 cut(s) | 2774, 2818, 2993 |
| BstX2I | RGATCY | 6 cut(s) | 450, 961, 2578, 2899, 3220, 3373 |
| BstYI | RGATCY | 6 cut(s) | 450, 961, 2578, 2899, 3220, 3373 |
| BstZ17I | GTATAC | 2 cut(s) | 861, 3102 |
| BtgI | CCRYGG | 4 cut(s) | 1184, 1314, 2816, 3293 |
| BtgZI | GCGATG | 1 cut(s) | 869 |
| BtsI | GCAGTG | 2 cut(s) | 1259, 3415 |
| BtsIMutI | CAGTG | 7 cut(s) | 942, 1259, 2589, 2700, 3132, 3415, 3427 |
| BveI | ACCTGC | 1 cut(s) | 576 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1480, 1606, 2251 |
| CciI | TCATGA | 1 cut(s) | 2611 |
| CfoI | GCGC | 6 cut(s) | 283, 490, 993, 2776, 2993, 2995 |
| Cfr13I | GGNCC | 9 cut(s) | 89, 343, 807, 1464, 2254, 2392, 2480, 2674, 3082 |
| Cfr42I | CCGCGG | 1 cut(s) | 2819 |
| CseI | GACGC | 1 cut(s) | 321 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 910 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 910 |
| Eam1104I | CTCTTC | 3 cut(s) | 709, 903, 2728 |
| EarI | CTCTTC | 3 cut(s) | 709, 903, 2728 |
| EciI | GGCGGA | 1 cut(s) | 2603 |
| Ecl136II | GAGCTC | 1 cut(s) | 3172 |
| Eco130I | CCWWGG | 3 cut(s) | 1184, 1314, 3293 |
| Eco147I | AGGCCT | 1 cut(s) | 1707 |
| Eco24I | GRGCYC | 1 cut(s) | 3174 |
| Eco47I | GGWCC | 2 cut(s) | 2480, 2674 |
| Eco53kI | GAGCTC | 1 cut(s) | 3172 |
| Eco57I | CTGAAG | 6 cut(s) | 18, 927, 983, 1859, 2135, 2888 |
| Eco88I | CYCGRG | 1 cut(s) | 802 |
| EcoICRI | GAGCTC | 1 cut(s) | 3172 |
| EcoRI | GAATTC | 2 cut(s) | 741, 1939 |
| EcoRII | CCWGG | 6 cut(s) | 1129, 1234, 1381, 1396, 2517, 3013 |
| EcoT14I | CCWWGG | 3 cut(s) | 1184, 1314, 3293 |
| EcoT22I | ATGCAT | 2 cut(s) | 735, 3433 |
| EcoT38I | GRGCYC | 1 cut(s) | 3174 |
| ErhI | CCWWGG | 3 cut(s) | 1184, 1314, 3293 |
| Esp3I | CGTCTC | 1 cut(s) | 173 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 858, 890 |
| FaqI | GGGAC | 3 cut(s) | 2029, 2489, 2944 |
| FauI | CCCGC | 1 cut(s) | 3197 |
| FauNDI | CATATG | 1 cut(s) | 3445 |
| FbaI | TGATCA | 1 cut(s) | 2704 |
| FblI | GTMKAC | 2 cut(s) | 860, 3101 |
| FriOI | GRGCYC | 1 cut(s) | 3174 |
| FspBI | CTAG | 8 cut(s) | 396, 464, 1038, 2598, 2751, 3024, 3185, 3215 |
| FspI | TGCGCA | 1 cut(s) | 282 |
| GlaI | GCGC | 6 cut(s) | 282, 489, 992, 2775, 2992, 2994 |
| GsaI | CCCAGC | 2 cut(s) | 90, 1915 |
| GsuI | CTGGAG | 3 cut(s) | 93, 639, 3069 |
| HgaI | GACGC | 1 cut(s) | 321 |
| HhaI | GCGC | 6 cut(s) | 283, 490, 993, 2776, 2993, 2995 |
| Hin1I | GRCGYC | 1 cut(s) | 332 |
| Hin6I | GCGC | 6 cut(s) | 281, 488, 991, 2774, 2991, 2993 |
| HinP1I | GCGC | 6 cut(s) | 281, 488, 991, 2774, 2991, 2993 |
| HincII | GTYRAC | 1 cut(s) | 1790 |
| HindII | GTYRAC | 1 cut(s) | 1790 |
| HindIII | AAGCTT | 4 cut(s) | 2715, 3242, 3402, 3489 |
| HphI | GGTGA | 4 cut(s) | 1040, 2370, 2810, 3296 |
| Hpy166II | GTNNAC | 6 cut(s) | 304, 861, 1790, 1866, 1924, 3102 |
| Hpy8I | GTNNAC | 6 cut(s) | 304, 861, 1790, 1866, 1924, 3102 |
| Hpy99I | CGWCG | 1 cut(s) | 438 |
| HpyAV | CCTTC | 9 cut(s) | 35, 222, 375, 825, 1718, 2511, 2604, 2794, 3200 |
| HpyCH4IV | ACGT | 2 cut(s) | 3088, 3098 |
| HpySE526I | ACGT | 2 cut(s) | 3088, 3098 |
| Hsp92I | GRCGYC | 1 cut(s) | 332 |
| HspAI | GCGC | 6 cut(s) | 281, 488, 991, 2774, 2991, 2993 |
| KpnI | GGTACC | 2 cut(s) | 833, 2697 |
| Ksp22I | TGATCA | 1 cut(s) | 2704 |
| KspI | CCGCGG | 1 cut(s) | 2819 |
| LmnI | GCTCC | 7 cut(s) | 13, 493, 1384, 1423, 1678, 2590, 2781 |
| LweI | GCATC | 7 cut(s) | 173, 613, 1125, 2314, 2376, 2737, 3034 |
| MaeI | CTAG | 8 cut(s) | 396, 464, 1038, 2598, 2751, 3024, 3185, 3215 |
| MaeII | ACGT | 2 cut(s) | 3088, 3098 |
| MaeIII | GTNAC | 9 cut(s) | 241, 398, 1072, 1456, 1764, 2106, 2437, 2600, 3145 |
| MfeI | CAATTG | 1 cut(s) | 1988 |
| MflI | RGATCY | 6 cut(s) | 450, 961, 2578, 2899, 3220, 3373 |
| MhlI | GDGCHC | 3 cut(s) | 3023, 3174, 3442 |
| MlyI | GAGTC | 6 cut(s) | 283, 603, 920, 1618, 1964, 2882 |
| MmeI | TCCRAC | 9 cut(s) | 94, 319, 563, 939, 953, 985, 1349, 2437, 2691 |
| Mph1103I | ATGCAT | 2 cut(s) | 735, 3433 |
| MroXI | GAANNNNTTC | 4 cut(s) | 452, 1166, 1943, 2455 |
| MseI | TTAA | 3 cut(s) | 1406, 1616, 2682 |
| MslI | CAYNNNNRTG | 4 cut(s) | 81, 519, 2870, 3264 |
| MspA1I | CMGCKG | 9 cut(s) | 443, 752, 1480, 1606, 1642, 1717, 1958, 2251, 2818 |
| MspR9I | CCNGG | 6 cut(s) | 1131, 1236, 1383, 1398, 2519, 3015 |
| MunI | CAATTG | 1 cut(s) | 1988 |
| Mva1269I | GAATGC | 2 cut(s) | 1168, 1885 |
| MvaI | CCWGG | 6 cut(s) | 1131, 1236, 1383, 1398, 2519, 3015 |
| MvnI | CGCG | 3 cut(s) | 2774, 2818, 2993 |
| NcoI | CCATGG | 3 cut(s) | 1184, 1314, 3293 |
| NdeI | CATATG | 1 cut(s) | 3445 |
| NheI | GCTAGC | 1 cut(s) | 2750 |
| NmeAIII | GCCGAG | 3 cut(s) | 1067, 2351, 3437 |
| NmuCI | GTSAC | 5 cut(s) | 241, 398, 1456, 1764, 2106 |
| NsbI | TGCGCA | 1 cut(s) | 282 |
| NsiI | ATGCAT | 2 cut(s) | 735, 3433 |
| NspI | RCATGY | 7 cut(s) | 80, 254, 733, 883, 2402, 3004, 3196 |
| NspV | TTCGAA | 2 cut(s) | 215, 2638 |
| PaeI | GCATGC | 3 cut(s) | 80, 733, 883 |
| PagI | TCATGA | 1 cut(s) | 2611 |
| PalAI | GGCGCGCC | 1 cut(s) | 2991 |
| PaqCI | CACCTGC | 1 cut(s) | 576 |
| PauI | GCGCGC | 1 cut(s) | 2991 |
| PceI | AGGCCT | 1 cut(s) | 1707 |
| PciI | ACATGT | 1 cut(s) | 2398 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1039 |
| PctI | GAATGC | 2 cut(s) | 1168, 1885 |
| PdmI | GAANNNNTTC | 4 cut(s) | 452, 1166, 1943, 2455 |
| PfeI | GAWTC | 6 cut(s) | 885, 1016, 1148, 1498, 2548, 2640 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1185, 1190 |
| PleI | GAGTC | 6 cut(s) | 283, 603, 919, 1618, 1964, 2882 |
| PpsI | GAGTC | 6 cut(s) | 283, 603, 919, 1618, 1964, 2882 |
| PscI | ACATGT | 1 cut(s) | 2398 |
| PshBI | ATTAAT | 1 cut(s) | 1616 |
| PsiI | TTATAA | 2 cut(s) | 638, 3156 |
| Psp124BI | GAGCTC | 1 cut(s) | 3174 |
| Psp1406I | AACGTT | 1 cut(s) | 3088 |
| Psp6I | CCWGG | 6 cut(s) | 1129, 1234, 1381, 1396, 2517, 3013 |
| PspFI | CCCAGC | 2 cut(s) | 86, 1911 |
| PspGI | CCWGG | 6 cut(s) | 1129, 1234, 1381, 1396, 2517, 3013 |
| PspPI | GGNCC | 9 cut(s) | 89, 343, 807, 1464, 2254, 2392, 2480, 2674, 3082 |
| PstI | CTGCAG | 4 cut(s) | 757, 1485, 1611, 1722 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1480, 1606, 2251 |
| PsuI | RGATCY | 6 cut(s) | 450, 961, 2578, 2899, 3220, 3373 |
| PteI | GCGCGC | 1 cut(s) | 2991 |
| PvuII | CAGCTG | 8 cut(s) | 443, 752, 1480, 1606, 1642, 1717, 1958, 2251 |
| RseI | CAYNNNNRTG | 4 cut(s) | 81, 519, 2870, 3264 |
| SacI | GAGCTC | 1 cut(s) | 3174 |
| SacII | CCGCGG | 1 cut(s) | 2819 |
| SaqAI | TTAA | 3 cut(s) | 1406, 1616, 2682 |
| Sau96I | GGNCC | 9 cut(s) | 89, 343, 807, 1464, 2254, 2392, 2480, 2674, 3082 |
| ScaI | AGTACT | 1 cut(s) | 409 |
| SchI | GAGTC | 6 cut(s) | 283, 603, 920, 1618, 1964, 2882 |
| ScrFI | CCNGG | 6 cut(s) | 1131, 1236, 1383, 1398, 2519, 3015 |
| SduI | GDGCHC | 3 cut(s) | 3023, 3174, 3442 |
| SfaNI | GCATC | 7 cut(s) | 173, 613, 1125, 2314, 2376, 2737, 3034 |
| SfcI | CTRYAG | 5 cut(s) | 753, 1481, 1607, 1718, 2240 |
| Sfr303I | CCGCGG | 1 cut(s) | 2819 |
| SfuI | TTCGAA | 2 cut(s) | 215, 2638 |
| SgrBI | CCGCGG | 1 cut(s) | 2819 |
| SgsI | GGCGCGCC | 1 cut(s) | 2991 |
| SinI | GGWCC | 2 cut(s) | 2480, 2674 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 81, 519, 2870, 3264 |
| SmlI | CTYRAG | 3 cut(s) | 138, 347, 1701 |
| SmoI | CTYRAG | 3 cut(s) | 138, 347, 1701 |
| SphI | GCATGC | 3 cut(s) | 80, 733, 883 |
| SseBI | AGGCCT | 1 cut(s) | 1707 |
| SsiI | CCGC | 8 cut(s) | 1997, 2069, 2231, 2325, 2588, 2816, 2818, 3190 |
| SspMI | CTAG | 8 cut(s) | 396, 464, 1038, 2598, 2751, 3024, 3185, 3215 |
| SstI | GAGCTC | 1 cut(s) | 3174 |
| StuI | AGGCCT | 1 cut(s) | 1707 |
| StyD4I | CCNGG | 6 cut(s) | 1129, 1234, 1381, 1396, 2517, 3013 |
| StyI | CCWWGG | 3 cut(s) | 1184, 1314, 3293 |
| TaiI | ACGT | 2 cut(s) | 3091, 3101 |
| TaqI | TCGA | 4 cut(s) | 215, 547, 1226, 2638 |
| TatI | WGTACW | 4 cut(s) | 407, 843, 2095, 3349 |
| TauI | GCSGC | 3 cut(s) | 2071, 2233, 2328 |
| TfiI | GAWTC | 6 cut(s) | 885, 1016, 1148, 1498, 2548, 2640 |
| Tru1I | TTAA | 3 cut(s) | 1406, 1616, 2682 |
| Tru9I | TTAA | 3 cut(s) | 1406, 1616, 2682 |
| TscAI | CASTG | 7 cut(s) | 949, 1259, 2589, 2707, 3132, 3415, 3427 |
| TseFI | GTSAC | 5 cut(s) | 241, 398, 1456, 1764, 2106 |
| Tsp45I | GTSAC | 5 cut(s) | 241, 398, 1456, 1764, 2106 |
| TspGWI | ACGGA | 2 cut(s) | 197, 2820 |
| TspRI | CASTG | 7 cut(s) | 949, 1259, 2589, 2707, 3132, 3415, 3427 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1185, 1190 |
| VpaK11BI | GGWCC | 2 cut(s) | 2480, 2674 |
| VspI | ATTAAT | 1 cut(s) | 1616 |
| XapI | RAATTY | 6 cut(s) | 741, 1213, 1369, 1843, 1939, 1977 |
| XbaI | TCTAGA | 1 cut(s) | 463 |
| XceI | RCATGY | 7 cut(s) | 80, 254, 733, 883, 2402, 3004, 3196 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 872, 1458, 1955, 3407 |
| XmiI | GTMKAC | 2 cut(s) | 860, 3101 |
| XmnI | GAANNNNTTC | 4 cut(s) | 452, 1166, 1943, 2455 |
| XspI | CTAG | 8 cut(s) | 396, 464, 1038, 2598, 2751, 3024, 3185, 3215 |
| ZrmI | AGTACT | 1 cut(s) | 409 |
| Zsp2I | ATGCAT | 2 cut(s) | 735, 3433 |