Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008380

Physical Location & Seq

Genomic Coordinates Forward (+)

8479821 .. 8486335

Gene Structure 6515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG100100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3297 bp

ATGAAGGCTCCTACAAATGGGTTTTTGGCAACTTCAGTTGAAGGAGAACAGAAGAATATCAATTCAGAGTTATGGCATGCCTGTGCTGGGCCATTGGTTTCTTTGCCTCCAGTTGGAAGTCTTGTGGTTTATTTTCCTCAAGGCCATAGTGAGCAAGTTTCAGCATCTATGCAAAAGGAGACGGATTTCATACCTAACTACCCCAATCTTCCTTCGAAATTGATATGCTTGCTTCACAATGTCACATTACATGCTGATACCGAAACAGATGAGGTGTATGCGCAGATGACTCTCCAACCAGTAAACAAATATGACAAGGAAGCAATACTGGCGTCTGACATGGGCCTCAAGCAAAGCAGGCAACCTTCTGAGTTTTTCTGCAAAACTCTTACAGCTAGTGACACAAGTACTCACGGTGGATTTTCTGTACCTCGTCGTGCAGCTGAGAAGATCTTCCCACCTCTAGATTTTACAATGCAACCACCAGCGCAGGAGCTTGTAGCAAGAGATTTGCATGATAGTGCATGGACATTCAGACATATTTATCGCGGCCAGCCAAAAAGGCACCTGCTGACTACTGGTTGGAGTGTTTTCGTTAGCACAAAAAGACTCTTTGCTGGAGATGCTGTTCTTTTTATAAGAGATGAAAAATCTCAGCTTCTCTTGGGTATAAGGCGTGCTAATAGGCAGCAACCAGCTCTCTCTTCATCAGTCATTTCCAGCGATAGCATGCATATTGGAATTCTTGCAGCTGCAGCTCATGCTACTGCAAATAACAGTCCATTTACCATATTTTACAACCCGAGGGCCAGCCCTTCTGAGTTTGTGGTACCTTTAGCCAAGTACAATAAAGCGATGTATACCCAAGTTTCACTTGGCATGCGATTCAGAATGATGTTTGAGACTGAAGAGTCAGGAGTTCGCAGATACATGGGTACAATCACTGGCATTAGCGAGTTGGATCCTGTTCGTTGGAAAAGTTCTCAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGATCGGCCTAGCCGAGTTTCAATTTGGGAAATTGAGCCTGTTGTAACTCCTTTCTACATCTGCCCACCTCCATTCTTCAGACCAAAGTTTCCCAAACAACCAGGGATGCCAGATGATGAATCTGACATAGAAAATGCCTTCAAGAGAGCCATGCCATGGCTTGGAGATGAGTTTGGCATGAAAAATTCCCCAAGCTCGATTTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAATATGCAACAAAATAATCAGTTTTCAGCCCCTCAGTCTGGATTTTTCCCATCCATGGTTCCTCCAACTACCCTGCATAACGGTACTGATGATCCATCCAAGTTGCTGAATTTTCAAGCTCCTGGTCTAACTGCACCAGGCCAGTTAAATAAAGCAGCTCCACAAAATCAAGTTAGTCAAGTGCAACAGCCAACTGTGACATGGCCCCAACAGCAGCAGCTGCAGCAACTAATGCAGAATCCTATGAACCAACAGCAGCAAAATCACTCGCAACAGCAACAGCTACAGCAATTATTGCATACTCCTTTGAACCAACAGCAGCAAAATCATCCCCAACAGCAGCAGCTGCAGCAATTAATGCAGACTCCTGCGAACCAACAGCTGCAAAATTACTCTCAGCAGCAACAGCAGCAACGGGAGCAACAAAACCATCAAGAACCTCAAGGCCTTCAACAGCTGCAGCAACTTCATCAGCTACATCAGCAGCAACCACAACGGCAACAGTCACAGCAACAACAACAGTTAGGTCAACCAACTCTTGTAAGTAATGGTCTTGTTACTCCAAACCAAATCCCAAGCCAAAATTCACAGCAACCAATGATGTTCACTCAGCTTCAGCAACAGCATTCACTAACAAGCAGTACCCAATCCCAGCAAGCAGTACACGCTCCTAATAAGAATTCATTCCAGTCGGCAGCTGGCACACAAGACTCACAAATTCAGCAACAATTGGAACCGCAACCAAGCCTGTTGCAAAGGCAGCAGCAGGCACAGTTGCAACAGTCCCCATTGCAGTTGTTGCAACAGCCGCAGAAAGCACAGCAGCAGCCACAAGTACAATCATCGTCACAACAGGCTTTGTCTGAGCAACAACTTCACTTACAGTTGCTTCAGAAATTGCAGCAGCAACAGCAACAGCAGCAGCAACAACAATTATTCTCTCCATCAAGCCCACTTTTGCAGCCGCAAATGCTACAGCAGCAGCTGGCCCATCAACAAAACCAGCAATTACAACAGTTGCAGTTGCCTCTGTCTCAGCATCATCAGCAACAGCCAAGCGGTAACAGCTTCTCAGCAGACAAACTTCTCAGCAGCAACAACTTCTCGGCTTCACCAATGATGCAGGCCCAACATGTTTCATCTATCCAACAACAGAACCAGCACAAGCCAGTTGCAGCAATCAGAAGCCATTCCAATCTTACAGAGGGGGACGGTCCATCATGTTCAACCTCCCCTTCTACAAATAATTGCCAGGTGTCCTCATCAAACCTACTGAACAGGAATCAGCAAGGAACAGCCATGTTGATAGGGGATCCAGTGGCGGAGCCTTCTAGTAACTTGGTTCATGATTTTCAGAGCAAGTCTGATATTCGAATCAAACATGAGTTGCCCATTTCAAAAGGACTGGACCAAATTAAATATAAAGGCACCATCACTGATCAGTTGGAAGCTTCCTCTTCTGGAACTTCATACTGTCTGGATGCTAGCACAATACAGCAGAACTACGCGCTCCCATCCTTCTGTTTAGATGGTGATGTCCAATCACATCCTCGGAACAATCTTCCGTTTTCAGCTAATGTTGATGGATTGGCACCTGACACTTTGATGTCAAGAGGATATGACTCTCAGAAAGATCTTCAGAACTTACTGTCTAATTATGGTGGGACACCAAGAGATATTGAGACAGAGCTATCTACTGCTGCAATCAGCTCTCAATCATTTGGGGCGCCAAACATGCCATTCAAGCCTGGGTGCTCTAGTGATGTTGCTCTAAATGATGCTGGAGTTCTAAATAATGGTTTGTGGGGATCACAGGCCCAACGTTTGAGAACGTATACAAAGGTTCAAAAGCGTGGATCAGTGGGAAGATGTATTGATGTTACCCGGTATAAAGGCTATGATGAGCTCAGGCATGATCTAGCCCGCATGTTTGGGATTGAAGGGCAACTAGAAGATCCACAAAGAACTGACTGGAAGCTTGTTTATGTGGATCACGAAAATGACATACTTCTTGTTGGTGATGATCCATGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

1098

Amino Acids

123.1

Weight (kDa)

6.4

Isoelectric Point (pI)

70.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	126 - 227	3.6e-20	B3 DNA binding domain
BRWD_AD	PF25313	254 - 357	3.1e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	275 - 357	2.2e-35	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19220 AT5G20730 AT5G20730 AT5G20730
fragaria_vesca	FvH4_1g09150 FvH4_1g09150 FvH4_1g09150
malus_domestica	MD02G1096700.v1.1 MD15G1221400.v1.1
prunus_persica	Prupe.7G194200_v2.0.a1 Prupe.7G194200_v2.0.a1
pyrus_communis	pycom02g07670
rosa_chinensis	RchiOBHm_Chr2g0095551
rosa_laevigata	RLG00000016578
rosa_multiflora	Rmu_sc0005382.1_g000007 Rmu_sc0038699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00146200
rosa_rugosa	Rorug02G0052300
rosa_samantha	Rh2AG100100 Rh2BG101600 Rh2CG103700 Rh2DG101000
rosa_wichuraiana	Rw2G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	638
AarI	CACCTGC	1 cut(s)	576
AasI	GACNNNNNNGTC	1 cut(s)	910
Acc16I	TGCGCA	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	576
Acc65I	GGTACC	1 cut(s)	829
AccB1I	GGYRCC	5 cut(s)	564, 829, 2687, 2851, 2986
AccB7I	CCANNNNNTGG	2 cut(s)	1185, 1190
AccI	GTMKAC	2 cut(s)	860, 3095
AccII	CGCG	2 cut(s)	549, 2768
AciI	CCGC	7 cut(s)	549, 1997, 2069, 2225, 2319, 2582, 3184
AclI	AACGTT	1 cut(s)	3082
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	6 cut(s)	741, 1213, 1369, 1843, 1939, 1977
AcuI	CTGAAG	7 cut(s)	18, 927, 983, 1090, 1859, 2135, 2882
AcyI	GRCGYC	2 cut(s)	332, 2987
AfaI	GTAC	9 cut(s)	409, 429, 831, 845, 937, 1345, 1903, 1923, 2097
AfiI	CCNNNNNNNGG	7 cut(s)	17, 87, 113, 1185, 1190, 1298, 1315
AflIII	ACRYGT	1 cut(s)	2392
AjnI	CCWGG	6 cut(s)	1129, 1234, 1381, 1396, 2511, 3007
AjuI	GAANNNNNNNTTGG	2 cut(s)	1828, 1860
AloI	GAACNNNNNNTCC	2 cut(s)	612, 644
Alw21I	GWGCWC	2 cut(s)	3017, 3168
Alw26I	GTCTC	4 cut(s)	173, 896, 2298, 2936
AlwNI	CAGNNNCTG	3 cut(s)	1480, 1606, 2245
Ama87I	CYCGRG	1 cut(s)	802
ApoI	RAATTY	6 cut(s)	741, 1213, 1369, 1843, 1939, 1977
AseI	ATTAAT	1 cut(s)	1616
Asp700I	GAANNNNTTC	3 cut(s)	452, 1943, 2449
Asp718I	GGTACC	1 cut(s)	829
AspLEI	GCGC	5 cut(s)	283, 490, 993, 2770, 2989
AspS9I	GGNCC	9 cut(s)	89, 343, 807, 1464, 2248, 2386, 2474, 2668, 3076
AsuC2I	CCSGG	1 cut(s)	3145
AsuHPI	GGTGA	4 cut(s)	1040, 2364, 2804, 3290
AsuII	TTCGAA	2 cut(s)	215, 2632
AsuNHI	GCTAGC	1 cut(s)	2744
AvaI	CYCGRG	1 cut(s)	802
AvaII	GGWCC	2 cut(s)	2474, 2668
BaeI	ACNNNNGTAYC	2 cut(s)	919, 952
BamHI	GGATCC	2 cut(s)	961, 2572
BanI	GGYRCC	5 cut(s)	564, 829, 2687, 2851, 2986
BanII	GRGCYC	1 cut(s)	3168
Bbv12I	GWGCWC	2 cut(s)	3017, 3168
BceAI	ACGGC	1 cut(s)	1772
BciT130I	CCWGG	6 cut(s)	1131, 1236, 1383, 1398, 2513, 3009
BclI	TGATCA	1 cut(s)	2698
BcnI	CCSGG	1 cut(s)	3145
BcoDI	GTCTC	4 cut(s)	173, 896, 2298, 2936
BfaI	CTAG	8 cut(s)	396, 464, 1038, 2592, 2745, 3018, 3179, 3209
BfmI	CTRYAG	6 cut(s)	753, 1481, 1544, 1607, 1718, 2234
BfoI	RGCGCY	1 cut(s)	2990
BfuAI	ACCTGC	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	562
BglII	AGATCT	2 cut(s)	450, 2893
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	7 cut(s)	1131, 1236, 1383, 1398, 2513, 3009, 3145
Bme18I	GGWCC	2 cut(s)	2474, 2668
BmeT110I	CYCGRG	1 cut(s)	802
BmgT120I	GGNCC	9 cut(s)	89, 343, 807, 1464, 2248, 2386, 2474, 2668, 3076
BmrFI	CCNGG	7 cut(s)	1131, 1236, 1383, 1398, 2513, 3009, 3145
BmsI	GCATC	7 cut(s)	173, 613, 1125, 2308, 2370, 2731, 3028
BmtI	GCTAGC	1 cut(s)	2748
BpmI	CTGGAG	3 cut(s)	93, 639, 3063
Bpu10I	CCTNAGC	1 cut(s)	3167
Bpu14I	TTCGAA	2 cut(s)	215, 2632
BpuEI	CTTGAG	3 cut(s)	123, 332, 1686
BpuMI	CCSGG	1 cut(s)	3145
BsaHI	GRCGYC	2 cut(s)	332, 2987
BsaJI	CCNNGG	8 cut(s)	803, 1130, 1184, 1234, 1314, 2810, 3008, 3287
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	7 cut(s)	17, 87, 113, 1185, 1190, 1298, 1315
Bse3DI	GCAATG	1 cut(s)	2048
BseBI	CCWGG	6 cut(s)	1131, 1236, 1383, 1398, 2513, 3009
BseDI	CCNNGG	8 cut(s)	803, 1130, 1184, 1234, 1314, 2810, 3008, 3287
BseLI	CCNNNNNNNGG	7 cut(s)	17, 87, 113, 1185, 1190, 1298, 1315
BseMI	GCAATG	1 cut(s)	2048
BseYI	CCCAGC	2 cut(s)	86, 1911
BsgI	GTGCAG	3 cut(s)	459, 1271, 1377
Bsh1236I	CGCG	2 cut(s)	549, 2768
BshNI	GGYRCC	5 cut(s)	564, 829, 2687, 2851, 2986
BsiHKAI	GWGCWC	2 cut(s)	3017, 3168
BsiHKCI	CYCGRG	1 cut(s)	802
BsiSI	CCGG	1 cut(s)	3145
BslFI	GGGAC	3 cut(s)	2029, 2483, 2938
BslI	CCNNNNNNNGG	7 cut(s)	17, 87, 113, 1185, 1190, 1298, 1315
BsmAI	GTCTC	4 cut(s)	173, 896, 2298, 2936
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	3 cut(s)	2029, 2483, 2938
BsmI	GAATGC	1 cut(s)	1885
BsoBI	CYCGRG	1 cut(s)	802
Bsp119I	TTCGAA	2 cut(s)	215, 2632
Bsp1286I	GDGCHC	2 cut(s)	3017, 3168
Bsp19I	CCATGG	3 cut(s)	1184, 1314, 3287
BspACI	CCGC	7 cut(s)	549, 1997, 2069, 2225, 2319, 2582, 3184
BspFNI	CGCG	2 cut(s)	549, 2768
BspHI	TCATGA	1 cut(s)	2605
BspMAI	CTGCAG	4 cut(s)	757, 1485, 1611, 1722
BspMI	ACCTGC	1 cut(s)	576
BspOI	GCTAGC	1 cut(s)	2748
BspT104I	TTCGAA	2 cut(s)	215, 2632
BspT107I	GGYRCC	5 cut(s)	564, 829, 2687, 2851, 2986
BsrDI	GCAATG	1 cut(s)	2048
BssECI	CCNNGG	8 cut(s)	803, 1130, 1184, 1234, 1314, 2810, 3008, 3287
BssNAI	GTATAC	2 cut(s)	861, 3096
BssNI	GRCGYC	2 cut(s)	332, 2987
BssT1I	CCWWGG	3 cut(s)	1184, 1314, 3287
Bst1107I	GTATAC	2 cut(s)	861, 3096
Bst2UI	CCWGG	6 cut(s)	1131, 1236, 1383, 1398, 2513, 3009
Bst6I	CTCTTC	3 cut(s)	709, 903, 2722
BstACI	GRCGYC	2 cut(s)	332, 2987
BstAPI	GCANNNNNTGC	7 cut(s)	761, 1480, 1492, 1555, 1606, 1618, 2059
BstBI	TTCGAA	2 cut(s)	215, 2632
BstDSI	CCRYGG	3 cut(s)	1184, 1314, 3287
BstFNI	CGCG	2 cut(s)	549, 2768
BstH2I	RGCGCY	1 cut(s)	2990
BstHHI	GCGC	5 cut(s)	283, 490, 993, 2770, 2989
BstMAI	GTCTC	4 cut(s)	173, 896, 2298, 2936
BstNI	CCWGG	6 cut(s)	1131, 1236, 1383, 1398, 2513, 3009
BstNSI	RCATGY	7 cut(s)	80, 254, 733, 883, 2396, 2998, 3190
BstSCI	CCNGG	7 cut(s)	1129, 1234, 1381, 1396, 2511, 3007, 3143
BstSFI	CTRYAG	6 cut(s)	753, 1481, 1544, 1607, 1718, 2234
BstUI	CGCG	2 cut(s)	549, 2768
BstX2I	RGATCY	5 cut(s)	450, 961, 2572, 2893, 3214
BstYI	RGATCY	5 cut(s)	450, 961, 2572, 2893, 3214
BstZ17I	GTATAC	2 cut(s)	861, 3096
BtgI	CCRYGG	3 cut(s)	1184, 1314, 3287
BtgZI	GCGATG	1 cut(s)	869
BtsI	GCAGTG	1 cut(s)	1259
BtsIMutI	CAGTG	5 cut(s)	942, 1259, 2583, 2694, 3126
BveI	ACCTGC	1 cut(s)	576
CaiI	CAGNNNCTG	3 cut(s)	1480, 1606, 2245
CciI	TCATGA	1 cut(s)	2605
CfoI	GCGC	5 cut(s)	283, 490, 993, 2770, 2989
Cfr13I	GGNCC	9 cut(s)	89, 343, 807, 1464, 2248, 2386, 2474, 2668, 3076
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	9 cut(s)	408, 428, 830, 844, 936, 1344, 1902, 1922, 2096
CviQI	GTAC	9 cut(s)	408, 428, 830, 844, 936, 1344, 1902, 1922, 2096
DinI	GGCGCC	1 cut(s)	2988
DrdI	GACNNNNNNGTC	1 cut(s)	910
DseDI	GACNNNNNNGTC	1 cut(s)	910
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	3 cut(s)	709, 903, 2722
EarI	CTCTTC	3 cut(s)	709, 903, 2722
EciI	GGCGGA	1 cut(s)	2597
Ecl136II	GAGCTC	1 cut(s)	3166
Eco130I	CCWWGG	3 cut(s)	1184, 1314, 3287
Eco147I	AGGCCT	1 cut(s)	1707
Eco24I	GRGCYC	1 cut(s)	3168
Eco47I	GGWCC	2 cut(s)	2474, 2668
Eco53kI	GAGCTC	1 cut(s)	3166
Eco57I	CTGAAG	7 cut(s)	18, 927, 983, 1090, 1859, 2135, 2882
Eco88I	CYCGRG	1 cut(s)	802
EcoICRI	GAGCTC	1 cut(s)	3166
EcoRI	GAATTC	2 cut(s)	741, 1939
EcoRII	CCWGG	6 cut(s)	1129, 1234, 1381, 1396, 2511, 3007
EcoT14I	CCWWGG	3 cut(s)	1184, 1314, 3287
EcoT22I	ATGCAT	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	3168
EgeI	GGCGCC	1 cut(s)	2988
EheI	GGCGCC	1 cut(s)	2988
ErhI	CCWWGG	3 cut(s)	1184, 1314, 3287
Esp3I	CGTCTC	1 cut(s)	173
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FaqI	GGGAC	3 cut(s)	2029, 2483, 2938
FauI	CCCGC	1 cut(s)	3191
FbaI	TGATCA	1 cut(s)	2698
FblI	GTMKAC	2 cut(s)	860, 3095
FriOI	GRGCYC	1 cut(s)	3168
FspBI	CTAG	8 cut(s)	396, 464, 1038, 2592, 2745, 3018, 3179, 3209
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	5 cut(s)	282, 489, 992, 2769, 2988
GsaI	CCCAGC	2 cut(s)	90, 1915
GsuI	CTGGAG	3 cut(s)	93, 639, 3063
HaeII	RGCGCY	1 cut(s)	2990
HapII	CCGG	1 cut(s)	3145
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	5 cut(s)	283, 490, 993, 2770, 2989
Hin1I	GRCGYC	2 cut(s)	332, 2987
Hin6I	GCGC	5 cut(s)	281, 488, 991, 2768, 2987
HinP1I	GCGC	5 cut(s)	281, 488, 991, 2768, 2987
HincII	GTYRAC	1 cut(s)	1790
HindII	GTYRAC	1 cut(s)	1790
HindIII	AAGCTT	2 cut(s)	2709, 3236
HpaII	CCGG	1 cut(s)	3145
HphI	GGTGA	4 cut(s)	1040, 2364, 2804, 3290
Hpy166II	GTNNAC	6 cut(s)	304, 861, 1790, 1866, 1924, 3096
Hpy8I	GTNNAC	6 cut(s)	304, 861, 1790, 1866, 1924, 3096
Hpy99I	CGWCG	1 cut(s)	438
HpyCH4IV	ACGT	2 cut(s)	3082, 3092
HpySE526I	ACGT	2 cut(s)	3082, 3092
Hsp92I	GRCGYC	2 cut(s)	332, 2987
HspAI	GCGC	5 cut(s)	281, 488, 991, 2768, 2987
KasI	GGCGCC	1 cut(s)	2986
KpnI	GGTACC	1 cut(s)	833
Ksp22I	TGATCA	1 cut(s)	2698
LmnI	GCTCC	8 cut(s)	13, 493, 1384, 1423, 1678, 1933, 2584, 2775
LweI	GCATC	7 cut(s)	173, 613, 1125, 2308, 2370, 2731, 3028
MaeI	CTAG	8 cut(s)	396, 464, 1038, 2592, 2745, 3018, 3179, 3209
MaeII	ACGT	2 cut(s)	3082, 3092
MfeI	CAATTG	1 cut(s)	1988
MflI	RGATCY	5 cut(s)	450, 961, 2572, 2893, 3214
MhlI	GDGCHC	2 cut(s)	3017, 3168
Mly113I	GGCGCC	1 cut(s)	2987
MlyI	GAGTC	6 cut(s)	283, 603, 920, 1618, 1964, 2876
MmeI	TCCRAC	9 cut(s)	94, 319, 563, 939, 953, 985, 1349, 2431, 2685
Mph1103I	ATGCAT	1 cut(s)	735
MroXI	GAANNNNTTC	3 cut(s)	452, 1943, 2449
MseI	TTAA	3 cut(s)	1406, 1616, 2676
MslI	CAYNNNNRTG	4 cut(s)	81, 519, 2864, 3258
MspA1I	CMGCKG	9 cut(s)	443, 752, 1025, 1480, 1606, 1642, 1717, 1958, 2245
MspI	CCGG	1 cut(s)	3145
MspR9I	CCNGG	7 cut(s)	1131, 1236, 1383, 1398, 2513, 3009, 3145
MunI	CAATTG	1 cut(s)	1988
Mva1269I	GAATGC	1 cut(s)	1885
MvaI	CCWGG	6 cut(s)	1131, 1236, 1383, 1398, 2513, 3009
MvnI	CGCG	2 cut(s)	549, 2768
NarI	GGCGCC	1 cut(s)	2987
NciI	CCSGG	1 cut(s)	3145
NcoI	CCATGG	3 cut(s)	1184, 1314, 3287
NheI	GCTAGC	1 cut(s)	2744
NmeAIII	GCCGAG	2 cut(s)	1067, 2345
NmuCI	GTSAC	5 cut(s)	241, 398, 1456, 1764, 2106
NsbI	TGCGCA	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	7 cut(s)	80, 254, 733, 883, 2396, 2998, 3190
NspV	TTCGAA	2 cut(s)	215, 2632
PaeI	GCATGC	3 cut(s)	80, 733, 883
PagI	TCATGA	1 cut(s)	2605
PaqCI	CACCTGC	1 cut(s)	576
PceI	AGGCCT	1 cut(s)	1707
PciI	ACATGT	1 cut(s)	2392
PcsI	WCGNNNNNNNCGW	1 cut(s)	1039
PctI	GAATGC	1 cut(s)	1885
PdmI	GAANNNNTTC	3 cut(s)	452, 1943, 2449
PfeI	GAWTC	6 cut(s)	885, 1016, 1148, 1498, 2542, 2634
PflMI	CCANNNNNTGG	2 cut(s)	1185, 1190
PleI	GAGTC	6 cut(s)	283, 603, 919, 1618, 1964, 2876
PluTI	GGCGCC	1 cut(s)	2990
PpsI	GAGTC	6 cut(s)	283, 603, 919, 1618, 1964, 2876
PscI	ACATGT	1 cut(s)	2392
PshBI	ATTAAT	1 cut(s)	1616
PsiI	TTATAA	1 cut(s)	638
Psp124BI	GAGCTC	1 cut(s)	3168
Psp1406I	AACGTT	1 cut(s)	3082
Psp6I	CCWGG	6 cut(s)	1129, 1234, 1381, 1396, 2511, 3007
PspFI	CCCAGC	2 cut(s)	86, 1911
PspGI	CCWGG	6 cut(s)	1129, 1234, 1381, 1396, 2511, 3007
PspPI	GGNCC	9 cut(s)	89, 343, 807, 1464, 2248, 2386, 2474, 2668, 3076
PstI	CTGCAG	4 cut(s)	757, 1485, 1611, 1722
PstNI	CAGNNNCTG	3 cut(s)	1480, 1606, 2245
PsuI	RGATCY	5 cut(s)	450, 961, 2572, 2893, 3214
PvuII	CAGCTG	9 cut(s)	443, 752, 1025, 1480, 1606, 1642, 1717, 1958, 2245
RsaI	GTAC	9 cut(s)	409, 429, 831, 845, 937, 1345, 1903, 1923, 2097
RsaNI	GTAC	9 cut(s)	408, 428, 830, 844, 936, 1344, 1902, 1922, 2096
RseI	CAYNNNNRTG	4 cut(s)	81, 519, 2864, 3258
SacI	GAGCTC	1 cut(s)	3168
SaqAI	TTAA	3 cut(s)	1406, 1616, 2676
Sau96I	GGNCC	9 cut(s)	89, 343, 807, 1464, 2248, 2386, 2474, 2668, 3076
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	6 cut(s)	283, 603, 920, 1618, 1964, 2876
ScrFI	CCNGG	7 cut(s)	1131, 1236, 1383, 1398, 2513, 3009, 3145
SduI	GDGCHC	2 cut(s)	3017, 3168
SfaNI	GCATC	7 cut(s)	173, 613, 1125, 2308, 2370, 2731, 3028
SfcI	CTRYAG	6 cut(s)	753, 1481, 1544, 1607, 1718, 2234
SfoI	GGCGCC	1 cut(s)	2988
SfuI	TTCGAA	2 cut(s)	215, 2632
SinI	GGWCC	2 cut(s)	2474, 2668
SmiMI	CAYNNNNRTG	4 cut(s)	81, 519, 2864, 3258
SmlI	CTYRAG	3 cut(s)	138, 347, 1701
SmoI	CTYRAG	3 cut(s)	138, 347, 1701
SphI	GCATGC	3 cut(s)	80, 733, 883
SseBI	AGGCCT	1 cut(s)	1707
SsiI	CCGC	7 cut(s)	549, 1997, 2069, 2225, 2319, 2582, 3184
SspDI	GGCGCC	1 cut(s)	2986
SspMI	CTAG	8 cut(s)	396, 464, 1038, 2592, 2745, 3018, 3179, 3209
SstI	GAGCTC	1 cut(s)	3168
StuI	AGGCCT	1 cut(s)	1707
StyD4I	CCNGG	7 cut(s)	1129, 1234, 1381, 1396, 2511, 3007, 3143
StyI	CCWWGG	3 cut(s)	1184, 1314, 3287
TaiI	ACGT	2 cut(s)	3085, 3095
TaqI	TCGA	3 cut(s)	215, 1226, 2632
TatI	WGTACW	4 cut(s)	407, 843, 1921, 2095
TauI	GCSGC	3 cut(s)	552, 2071, 2227
TfiI	GAWTC	6 cut(s)	885, 1016, 1148, 1498, 2542, 2634
Tru1I	TTAA	3 cut(s)	1406, 1616, 2676
Tru9I	TTAA	3 cut(s)	1406, 1616, 2676
TscAI	CASTG	5 cut(s)	949, 1259, 2583, 2701, 3126
TseFI	GTSAC	5 cut(s)	241, 398, 1456, 1764, 2106
Tsp45I	GTSAC	5 cut(s)	241, 398, 1456, 1764, 2106
TspGWI	ACGGA	2 cut(s)	197, 2814
TspRI	CASTG	5 cut(s)	949, 1259, 2583, 2701, 3126
Van91I	CCANNNNNTGG	2 cut(s)	1185, 1190
VpaK11BI	GGWCC	2 cut(s)	2474, 2668
VspI	ATTAAT	1 cut(s)	1616
XapI	RAATTY	6 cut(s)	741, 1213, 1369, 1843, 1939, 1977
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	7 cut(s)	80, 254, 733, 883, 2396, 2998, 3190
XcmI	CCANNNNNNNNNTGG	3 cut(s)	872, 1458, 1955
XmiI	GTMKAC	2 cut(s)	860, 3095
XmnI	GAANNNNTTC	3 cut(s)	452, 1943, 2449
XspI	CTAG	8 cut(s)	396, 464, 1038, 2592, 2745, 3018, 3179, 3209
ZrmI	AGTACT	1 cut(s)	409
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.