Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010820

Physical Location & Seq

Genomic Coordinates Reverse (-)

7092512 .. 7094503

Gene Structure 1992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATGCATCGTCTTCACCGTCTCCTTCCGAGGAAAGCTTGAAGCTTGAGCTTGATGATCTTCAGAAACAGCTGAACAAAAAGCTGAGATTCGAAGCATCCGTTTGTTCTATTCATAATCTTCTCCGTGATCACTACTCTTCTTCCTCTCCTTCTCTCCGCAAACAGTTCTATATAGTTGTATCTCGTGTCGCTACGGTTCTTAAGACAAGATATACAGCTACTGGATTTTGGGTTGCTGGACTGAGTCTTTTCGAAGAGGCTGAGCGACTTGTCTCTGATGCTTCTGAGAAGAAACATTTGAAATCTTGCGTTGCTCAAGCTAAGGAGCAGTTAAGCGAAGTAGATAATCAGCCAACAGAGAGCTCACAAGGTTATCTTTTTGAGGGACATCTTACGGTTGATCGTGAGCCGCCACAGCCTCAGTGGCTAGTACAGCAGAATCTCATGTCTGCTTTCGCTTCTATCGTTGGTGGTGAATCCTCTAATGGTCCTACTGAAAACACTATTGGGGAAACTGCTAACTTGATGCAAGAACTTATCAATGGTCTTGACATGATCATTCCAGATATACTAGATGATGGTGGACCACCAAGAGCTCCACCGGCAAGTAAAGAAGTTGTAGAGAAACTCCCAGTCATTATTTTCACCGAGGAATTGCTTAAAAAGTTTGGAGCAGAGGCAGAATGTTGCATCTGCAAGGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCCTCCTTGCCTAAAGCCTTGGCTGGACGAGCATAACTCTTGCCCTATATGCCGCCATGAATTACCAACAGACGATCAGAAATACGAAAACTGGAAAGAGAGAGAGAAAGAGGCCGAAGAAGAGAGGAAGGGCGCAGAGAATGCTGTCCGCGGAGGTGAATATATGTACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

310

Amino Acids

34.81

Weight (kDa)

4.98

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	229 - 271	7.6e-13	Ring finger domain
zf-C3HC4_2	PF13923	229 - 270	4.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	229 - 257	4.1e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20910
fragaria_vesca	FvH4_2g37060
malus_domestica	MD08G1042800.v1.1 MD08G1045000.v1.1 MD08G1045700.v1.1 MD15G1046800.v1.1
prunus_persica	Prupe.1G401200_v2.0.a1 Prupe.1G401200_v2.0.a1
pyrus_communis	pycom15g04480
rosa_chinensis	RchiOBHm_Chr6g0304721
rosa_laevigata	RLG00000010956
rosa_multiflora	Rmu_co8160404.1_g000001 Rmu_sc0027256.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163560
rosa_rugosa	Rorug06G0333800
rosa_samantha	Rh6AG445800 Rh6BG455900 Rh6CG458900 Rh6DG445900
rosa_wichuraiana	Rw6G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	909
AciI	CCGC	5 cut(s)	160, 413, 811, 907, 909
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	435, 926
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	43, 304
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AluBI	AGCT	9 cut(s)	39, 46, 52, 73, 85, 221, 323, 366, 599
AluI	AGCT	9 cut(s)	39, 46, 52, 73, 85, 221, 323, 366, 599
Alw21I	GWGCWC	2 cut(s)	368, 601
Alw26I	GTCTC	2 cut(s)	27, 280
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	870
AspLEI	GCGC	1 cut(s)	893
AspS9I	GGNCC	2 cut(s)	491, 587
AsuHPI	GGTGA	5 cut(s)	9, 488, 640, 749, 926
AsuII	TTCGAA	2 cut(s)	93, 255
AvaII	GGWCC	2 cut(s)	491, 587
BanII	GRGCYC	2 cut(s)	368, 601
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	6
Bbv12I	GWGCWC	2 cut(s)	368, 601
BccI	CCATC	1 cut(s)	575
BclI	TGATCA	2 cut(s)	130, 558
BcoDI	GTCTC	2 cut(s)	27, 280
BfaI	CTAG	3 cut(s)	431, 575, 710
BfrI	CTTAAG	1 cut(s)	203
BglI	GCCNNNNNGGC	1 cut(s)	427
BisI	GCNGC	2 cut(s)	413, 811
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	2 cut(s)	414, 812
Bme18I	GGWCC	2 cut(s)	491, 587
BmgT120I	GGNCC	2 cut(s)	491, 587
BmrI	ACTGGG	1 cut(s)	629
BmsI	GCATC	6 cut(s)	17, 107, 271, 519, 702, 717
BmuI	ACTGGG	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	6
BplI	GAGNNNNNCTC	2 cut(s)	779, 811
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	264
Bpu14I	TTCGAA	2 cut(s)	93, 255
BpuEI	CTTGAG	2 cut(s)	68, 303
BsaJI	CCNNGG	4 cut(s)	30, 651, 776, 907
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	3 cut(s)	229, 635, 854
BseDI	CCNNGG	4 cut(s)	30, 651, 776, 907
BseGI	GGATG	2 cut(s)	10, 98
BseMII	CTCAG	5 cut(s)	77, 236, 255, 279, 437
BseNI	ACTGG	3 cut(s)	229, 635, 854
Bsh1236I	CGCG	1 cut(s)	909
BshFI	GGCC	1 cut(s)	872
BsiHKAI	GWGCWC	2 cut(s)	368, 601
BsiSI	CCGG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	402
BsmAI	GTCTC	2 cut(s)	27, 280
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	1 cut(s)	872
Bsp119I	TTCGAA	2 cut(s)	93, 255
Bsp1286I	GDGCHC	2 cut(s)	368, 601
Bsp143I	GATC	5 cut(s)	58, 130, 403, 558, 832
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	5 cut(s)	160, 413, 811, 907, 909
BspANI	GGCC	1 cut(s)	872
BspCNI	CTCAG	5 cut(s)	78, 237, 256, 280, 436
BspFNI	CGCG	1 cut(s)	909
BspT104I	TTCGAA	2 cut(s)	93, 255
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	604
BsrI	ACTGG	3 cut(s)	229, 635, 854
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	4 cut(s)	30, 651, 776, 907
BssMI	GATC	5 cut(s)	58, 130, 403, 558, 832
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	776
Bst2BI	CACGAG	1 cut(s)	186
Bst4CI	ACNGT	4 cut(s)	21, 168, 199, 400
Bst6I	CTCTTC	3 cut(s)	145, 252, 873
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	736, 899
BstBI	TTCGAA	2 cut(s)	93, 255
BstC8I	GCNNGC	1 cut(s)	746
BstDEI	CTNAG	6 cut(s)	86, 245, 264, 288, 324, 423
BstDSI	CCRYGG	1 cut(s)	907
BstF5I	GGATG	2 cut(s)	10, 98
BstFNI	CGCG	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	893
BstKTI	GATC	5 cut(s)	61, 133, 406, 561, 835
BstMAI	GTCTC	2 cut(s)	27, 280
BstMBI	GATC	5 cut(s)	58, 130, 403, 558, 832
BstMWI	GCNNNNNNNGC	9 cut(s)	418, 427, 436, 605, 736, 745, 787, 807, 899
BstUI	CGCG	1 cut(s)	909
BstV2I	GAAGAC	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	872
BtgI	CCRYGG	1 cut(s)	907
BtsCI	GGATG	2 cut(s)	10, 98
BtsIMutI	CAGTG	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	746
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	893
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	2 cut(s)	491, 587
Cfr42I	CCGCGG	1 cut(s)	910
Csp6I	GTAC	2 cut(s)	434, 925
CviAII	CATG	4 cut(s)	448, 556, 741, 815
CviQI	GTAC	2 cut(s)	434, 925
DdeI	CTNAG	6 cut(s)	86, 245, 264, 288, 324, 423
DpnI	GATC	5 cut(s)	60, 132, 405, 560, 834
DpnII	GATC	5 cut(s)	58, 130, 403, 558, 832
Eam1104I	CTCTTC	3 cut(s)	145, 252, 873
EarI	CTCTTC	3 cut(s)	145, 252, 873
Ecl136II	GAGCTC	2 cut(s)	366, 599
Eco130I	CCWWGG	1 cut(s)	776
Eco24I	GRGCYC	2 cut(s)	368, 601
Eco47I	GGWCC	2 cut(s)	491, 587
Eco53kI	GAGCTC	2 cut(s)	366, 599
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	2 cut(s)	366, 599
EcoT14I	CCWWGG	1 cut(s)	776
EcoT22I	ATGCAT	1 cut(s)	10
EcoT38I	GRGCYC	2 cut(s)	368, 601
ErhI	CCWWGG	1 cut(s)	776
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	4 cut(s)	451, 559, 744, 818
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	4 cut(s)	447, 555, 740, 814
FbaI	TGATCA	2 cut(s)	130, 558
Fnu4HI	GCNGC	2 cut(s)	413, 811
FokI	GGATG	2 cut(s)	17, 85
FriOI	GRGCYC	2 cut(s)	368, 601
Fsp4HI	GCNGC	2 cut(s)	413, 811
FspBI	CTAG	3 cut(s)	431, 575, 710
GlaI	GCGC	1 cut(s)	892
GluI	GCNGC	2 cut(s)	413, 811
HaeIII	GGCC	1 cut(s)	872
HapII	CCGG	1 cut(s)	605
HhaI	GCGC	1 cut(s)	893
Hin1II	CATG	4 cut(s)	451, 559, 744, 818
Hin6I	GCGC	1 cut(s)	891
HinP1I	GCGC	1 cut(s)	891
HindIII	AAGCTT	2 cut(s)	37, 44
HinfI	GANTC	5 cut(s)	90, 247, 442, 479, 706
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	5 cut(s)	9, 488, 640, 749, 926
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188I	TCNGA	5 cut(s)	31, 66, 280, 289, 837
Hpy188III	TCNNGA	3 cut(s)	407, 551, 566
Hpy8I	GTNNAC	1 cut(s)	587
HpyAV	CCTTC	3 cut(s)	36, 162, 880
HpyCH4III	ACNGT	4 cut(s)	21, 168, 199, 400
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	6 cut(s)	8, 532, 693, 699, 730, 744
HpyF10VI	GCNNNNNNNGC	9 cut(s)	418, 427, 436, 605, 736, 745, 787, 807, 899
HpyF3I	CTNAG	6 cut(s)	86, 245, 264, 288, 324, 423
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	4 cut(s)	451, 559, 744, 818
HspAI	GCGC	1 cut(s)	891
Ksp22I	TGATCA	2 cut(s)	130, 558
KspI	CCGCGG	1 cut(s)	910
Kzo9I	GATC	5 cut(s)	58, 130, 403, 558, 832
LmnI	GCTCC	3 cut(s)	328, 604, 674
LpnPI	CCDG	8 cut(s)	210, 225, 579, 618, 648, 716, 767, 835
LweI	GCATC	6 cut(s)	17, 107, 271, 519, 702, 717
MaeI	CTAG	3 cut(s)	431, 575, 710
MaeII	ACGT	1 cut(s)	927
MalI	GATC	5 cut(s)	60, 132, 405, 560, 834
MboI	GATC	5 cut(s)	58, 130, 403, 558, 832
MboII	GAAGA	9 cut(s)	6, 53, 113, 132, 135, 269, 304, 887, 890
MhlI	GDGCHC	2 cut(s)	368, 601
MluCI	AATT	3 cut(s)	656, 734, 818
MlyI	GAGTC	1 cut(s)	256
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	4 cut(s)	204, 335, 663, 931
MspA1I	CMGCKG	2 cut(s)	73, 909
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	605
Mva1269I	GAATGC	1 cut(s)	904
MvnI	CGCG	1 cut(s)	909
MwoI	GCNNNNNNNGC	9 cut(s)	418, 427, 436, 605, 736, 745, 787, 807, 899
NdeII	GATC	5 cut(s)	58, 130, 403, 558, 832
NlaIII	CATG	4 cut(s)	451, 559, 744, 818
NsiI	ATGCAT	1 cut(s)	10
NspV	TTCGAA	2 cut(s)	93, 255
PcsI	WCGNNNNNNNCGW	3 cut(s)	17, 99, 465
PctI	GAATGC	1 cut(s)	904
PfeI	GAWTC	4 cut(s)	90, 442, 479, 706
PflFI	GACNNNGTC	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	414, 812
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp124BI	GAGCTC	2 cut(s)	368, 601
PspPI	GGNCC	2 cut(s)	491, 587
PstNI	CAGNNNCTG	1 cut(s)	224
PsyI	GACNNNGTC	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	73
RsaI	GTAC	2 cut(s)	435, 926
RsaNI	GTAC	2 cut(s)	434, 925
SacI	GAGCTC	2 cut(s)	368, 601
SacII	CCGCGG	1 cut(s)	910
SaqAI	TTAA	4 cut(s)	204, 335, 663, 931
SatI	GCNGC	2 cut(s)	413, 811
Sau3AI	GATC	5 cut(s)	58, 130, 403, 558, 832
Sau96I	GGNCC	2 cut(s)	491, 587
SchI	GAGTC	1 cut(s)	256
SduI	GDGCHC	2 cut(s)	368, 601
SfaNI	GCATC	6 cut(s)	17, 107, 271, 519, 702, 717
Sfr303I	CCGCGG	1 cut(s)	910
SfuI	TTCGAA	2 cut(s)	93, 255
SgrBI	CCGCGG	1 cut(s)	910
SinI	GGWCC	2 cut(s)	491, 587
SmlI	CTYRAG	3 cut(s)	47, 203, 318
SmoI	CTYRAG	3 cut(s)	47, 203, 318
Sse9I	AATT	3 cut(s)	656, 734, 818
SsiI	CCGC	5 cut(s)	160, 413, 811, 907, 909
SspMI	CTAG	3 cut(s)	431, 575, 710
SstI	GAGCTC	2 cut(s)	368, 601
StyI	CCWWGG	1 cut(s)	776
TaaI	ACNGT	4 cut(s)	21, 168, 199, 400
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	2 cut(s)	93, 255
TasI	AATT	3 cut(s)	656, 734, 818
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	2 cut(s)	415, 813
TfiI	GAWTC	4 cut(s)	90, 442, 479, 706
Tru1I	TTAA	4 cut(s)	204, 335, 663, 931
Tru9I	TTAA	4 cut(s)	204, 335, 663, 931
TscAI	CASTG	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	104, 831
TspGWI	ACGGA	2 cut(s)	91, 116
TspRI	CASTG	1 cut(s)	431
Tth111I	GACNNNGTC	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	491, 587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XspI	CTAG	3 cut(s)	431, 575, 710
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.