FvH4_2g37060

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
27052700 .. 27054702
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37060.t1

Sequence Viewer

Length: 948 bp
ATGGATTCCGAAGACGAACAATACCTGAAGCAAAGACTAGACGAATTGCAGAGAGACGTCTCCAAGAAGCAAAAATTCGAGCCCGCCGTCGCCGCCCTCACCTCTCTCCTCCGCGACCGCTACTCCTCCGCCTCCCCGCCGCTCCGCAAGTCCTACCTCACCGTCGTCTCCCGCGTCGCCACCGTCTTGAAGACCCGCTACACCTCCCCCGGGTTCTGGGCCGCCGGGTTGGCCCTCTTCCGCCTGGCCCTAACCCTAGTTTCCGACCCGGCCGAGAAGAGCCTGTTGCTCGGTTACATTTCCGACGCCGAGAAAGTCGTCCGGCAAGACGACGAGCCTAGCGCTCTCCCGCCCCCGAATCAAGGGTTTCTTTTCGAGGGGCATCTGACGGTGGATCGGGAACCGCCGCGGCCACAGTGGCTGGTCCAGGAGAGTTTCCTCGCCTCCGCCGCCACTCTCTTCGCGGCTGAGTCTTCGGCTAATTCGGGTCGGCCCGTGACCGAGACCGGCGGCGACTCCCAGGACACGGCGAATCTGCTGCAGTCGCTGATTGACAACCTGGACAGCGTTCTGCCGCCGGGGATTCTTGACGACGTGAGAGGAGCGCCGAGGGTGCCTCCGGCGAGTAAGAAAGTGGTGGCAAATCTTCCGGTGATTACGATCACGGAGGAGAAGCTGAAGAAGCTTGGAGAGGAAGCGGAGTGCTGCATTTGTAAAGAGAATTTGGTCGTGAATGATAAGATGCAGGAGTTGCCTTGCAAGCACACATTTCATCCGCCGTGTTTAAAGCCTTGGCTGGATGAGCACAATTCGTGTCCGATATGCCGGCATGAGTTGGAGACCGATGATCATGCGTATGAGAGCCGGAAGGAGAGAGAGAGGGAGGCTGAAGAAGACAGAAAAGGCGCTGCCAATGCGGTTAGGGGAGGTGAATACATGTATGTTTAA

Protein Analysis

316

Amino Acids

35.04

Weight (kDa)

5.19

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 234 - 276 8.9e-13 Ring finger domain
zf-RING_11 PF17123 234 - 262 4.9e-07 RING-like zinc finger
zf-C3HC4_2 PF13923 234 - 275 7.6e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 613
AccBSI CCGCTC 1 cut(s) 142
AccII CGCG 4 cut(s) 114, 174, 409, 464
AclWI GGATC 1 cut(s) 402
AcoI YGGCCR 2 cut(s) 270, 410
AcsI RAATTY 2 cut(s) 74, 721
AcuI CTGAAG 3 cut(s) 47, 698, 909
AcyI GRCGYC 2 cut(s) 57, 306
AfeI AGCGCT 1 cut(s) 343
AfiI CCNNNNNNNGG 4 cut(s) 210, 216, 362, 526
AflIII ACRYGT 1 cut(s) 936
AgsI TTSAA 1 cut(s) 190
AjiI CACGTC 1 cut(s) 595
AjnI CCWGG 4 cut(s) 243, 426, 519, 558
AluBI AGCT 2 cut(s) 676, 685
AluI AGCT 2 cut(s) 676, 685
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 5 cut(s) 48, 64, 172, 497, 833
AlwI GGATC 1 cut(s) 402
AlwNI CAGNNNCTG 2 cut(s) 421, 547
Ama87I CYCGRG 1 cut(s) 209
Aor51HI AGCGCT 1 cut(s) 343
AoxI GGCC 6 cut(s) 219, 231, 246, 270, 410, 491
ApeKI GCWGC 3 cut(s) 538, 705, 908
ApoI RAATTY 2 cut(s) 74, 721
AspLEI GCGC 3 cut(s) 344, 607, 908
AspS9I GGNCC 5 cut(s) 219, 232, 247, 424, 492
AsuC2I CCSGG 5 cut(s) 210, 211, 226, 269, 579
AsuHPI GGTGA 4 cut(s) 91, 151, 664, 941
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 424
BanI GGYRCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbsI GAAGAC 4 cut(s) 18, 197, 465, 900
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 3 cut(s) 525, 692, 895
BceAI ACGGC 3 cut(s) 71, 543, 763
BcgI CGANNNNNNTGC 4 cut(s) 520, 554, 833, 867
BciT130I CCWGG 4 cut(s) 245, 428, 521, 560
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 5 cut(s) 210, 211, 226, 269, 579
BcoDI GTCTC 5 cut(s) 48, 64, 172, 497, 833
BfaI CTAG 3 cut(s) 38, 257, 339
BfmI CTRYAG 1 cut(s) 539
BfoI RGCGCY 3 cut(s) 345, 608, 909
BglI GCCNNNNNGGC 2 cut(s) 230, 418
Bme1390I CCNGG 9 cut(s) 210, 211, 226, 245, 269, 428, 521, 560, 579
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 5 cut(s) 219, 232, 247, 424, 492
BmiI GGNNCC 2 cut(s) 402, 615
BmrFI CCNGG 9 cut(s) 210, 211, 226, 245, 269, 428, 521, 560, 579
BmsI GCATC 2 cut(s) 391, 732
BpiI GAAGAC 4 cut(s) 18, 197, 465, 900
BplI GAGNNNNNCTC 2 cut(s) 601, 633
BpuMI CCSGG 5 cut(s) 210, 211, 226, 269, 579
BsaBI GATNNNNATC 1 cut(s) 659
BsaHI GRCGYC 2 cut(s) 57, 306
BsaI GGTCTC 2 cut(s) 497, 833
BsaJI CCNNGG 7 cut(s) 208, 209, 407, 519, 578, 608, 791
BsaWI WCCGGW 1 cut(s) 649
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 4 cut(s) 210, 216, 362, 526
Bse118I RCCGGY 2 cut(s) 506, 825
Bse8I GATNNNNATC 1 cut(s) 659
BseBI CCWGG 4 cut(s) 245, 428, 521, 560
BseDI CCNNGG 7 cut(s) 208, 209, 407, 519, 578, 608, 791
BseGI GGATG 2 cut(s) 772, 805
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 4 cut(s) 210, 216, 362, 526
BseMII CTCAG 1 cut(s) 459
BseRI GAGGAG 4 cut(s) 98, 115, 615, 683
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 3 cut(s) 525, 692, 895
Bsh1236I CGCG 4 cut(s) 114, 174, 409, 464
Bsh1285I CGRYCG 2 cut(s) 118, 273
BshFI GGCC 6 cut(s) 221, 233, 248, 272, 412, 493
BshNI GGYRCC 1 cut(s) 613
BsiEI CGRYCG 2 cut(s) 118, 273
BsiHKAI GWGCWC 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 209
BslI CCNNNNNNNGG 4 cut(s) 210, 216, 362, 526
BsmAI GTCTC 5 cut(s) 48, 64, 172, 497, 833
BsmBI CGTCTC 3 cut(s) 48, 64, 172
BsnI GGCC 6 cut(s) 221, 233, 248, 272, 412, 493
Bso31I GGTCTC 2 cut(s) 497, 833
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 84, 807
Bsp143I GATC 3 cut(s) 394, 660, 847
BspANI GGCC 6 cut(s) 221, 233, 248, 272, 412, 493
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 4 cut(s) 114, 174, 409, 464
BspLI GGNNCC 2 cut(s) 402, 615
BspMAI CTGCAG 1 cut(s) 543
BspPI GGATC 1 cut(s) 402
BspQI GCTCTTC 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 613
BspTNI GGTCTC 2 cut(s) 497, 833
BsrBI CCGCTC 1 cut(s) 142
BsrFI RCCGGY 2 cut(s) 506, 825
BssAI RCCGGY 2 cut(s) 506, 825
BssECI CCNNGG 7 cut(s) 208, 209, 407, 519, 578, 608, 791
BssMI GATC 3 cut(s) 394, 660, 847
BssNI GRCGYC 2 cut(s) 57, 306
BssT1I CCWWGG 1 cut(s) 791
Bst2UI CCWGG 4 cut(s) 245, 428, 521, 560
Bst4CI ACNGT 4 cut(s) 163, 184, 391, 417
Bst6I CTCTTC 3 cut(s) 242, 272, 464
BstACI GRCGYC 2 cut(s) 57, 306
BstAPI GCANNNNNTGC 1 cut(s) 751
BstC8I GCNNGC 3 cut(s) 84, 761, 827
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 772, 805
BstFNI CGCG 4 cut(s) 114, 174, 409, 464
BstH2I RGCGCY 3 cut(s) 345, 608, 909
BstHHI GCGC 3 cut(s) 344, 607, 908
BstKTI GATC 3 cut(s) 397, 663, 850
BstMAI GTCTC 5 cut(s) 48, 64, 172, 497, 833
BstMBI GATC 3 cut(s) 394, 660, 847
BstMCI CGRYCG 2 cut(s) 118, 273
BstNI CCWGG 4 cut(s) 245, 428, 521, 560
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 9 cut(s) 208, 209, 224, 243, 267, 426, 519, 558, 577
BstSFI CTRYAG 1 cut(s) 539
BstUI CGCG 4 cut(s) 114, 174, 409, 464
BstV1I GCAGC 3 cut(s) 525, 692, 895
BstV2I GAAGAC 4 cut(s) 18, 197, 465, 900
BstZI CGGCCG 1 cut(s) 270
BsuRI GGCC 6 cut(s) 221, 233, 248, 272, 412, 493
BtgI CCRYGG 1 cut(s) 407
BtrI CACGTC 1 cut(s) 595
BtsCI GGATG 2 cut(s) 772, 805
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 3 cut(s) 84, 761, 827
CaiI CAGNNNCTG 2 cut(s) 421, 547
CfoI GCGC 3 cut(s) 344, 607, 908
Cfr10I RCCGGY 2 cut(s) 506, 825
Cfr13I GGNCC 5 cut(s) 219, 232, 247, 424, 492
Cfr42I CCGCGG 1 cut(s) 410
Cfr9I CCCGGG 1 cut(s) 209
CseI GACGC 2 cut(s) 163, 314
CviAII CATG 3 cut(s) 830, 851, 937
DdeI CTNAG 1 cut(s) 468
DpnI GATC 3 cut(s) 396, 662, 849
DpnII GATC 3 cut(s) 394, 660, 847
DraI TTTAAA 1 cut(s) 786
EaeI YGGCCR 2 cut(s) 270, 410
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 3 cut(s) 242, 272, 464
EarI CTCTTC 3 cut(s) 242, 272, 464
EciI GGCGGA 4 cut(s) 118, 230, 436, 765
EclXI CGGCCG 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 791
Eco24I GRGCYC 1 cut(s) 84
Eco31I GGTCTC 2 cut(s) 497, 833
Eco47I GGWCC 1 cut(s) 424
Eco47III AGCGCT 1 cut(s) 343
Eco52I CGGCCG 1 cut(s) 270
Eco57I CTGAAG 3 cut(s) 47, 698, 909
Eco88I CYCGRG 1 cut(s) 209
EcoRII CCWGG 4 cut(s) 243, 426, 519, 558
EcoT14I CCWWGG 1 cut(s) 791
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 791
Esp3I CGTCTC 3 cut(s) 48, 64, 172
FaeI CATG 3 cut(s) 833, 854, 940
FaiI YATR 6 cut(s) 823, 831, 852, 858, 938, 942
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 3 cut(s) 829, 850, 936
FauI CCCGC 5 cut(s) 91, 144, 179, 203, 357
FbaI TGATCA 1 cut(s) 847
FokI GGATG 2 cut(s) 759, 812
FriOI GRGCYC 1 cut(s) 84
FspBI CTAG 3 cut(s) 38, 257, 339
GlaI GCGC 3 cut(s) 343, 606, 907
HaeII RGCGCY 3 cut(s) 345, 608, 909
HaeIII GGCC 6 cut(s) 221, 233, 248, 272, 412, 493
HgaI GACGC 2 cut(s) 163, 314
HhaI GCGC 3 cut(s) 344, 607, 908
Hin1I GRCGYC 2 cut(s) 57, 306
Hin1II CATG 3 cut(s) 833, 854, 940
Hin6I GCGC 3 cut(s) 342, 605, 906
HinP1I GCGC 3 cut(s) 342, 605, 906
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 6 cut(s) 5, 358, 470, 515, 532, 583
HphI GGTGA 4 cut(s) 91, 151, 664, 941
Hpy188I TCNGA 5 cut(s) 10, 265, 304, 387, 819
Hpy188III TCNNGA 4 cut(s) 187, 398, 587, 730
Hpy99I CGWCG 6 cut(s) 92, 167, 179, 308, 335, 596
HpyAV CCTTC 1 cut(s) 862
HpyCH4III ACNGT 4 cut(s) 163, 184, 391, 417
HpyCH4IV ACGT 2 cut(s) 57, 594
HpyCH4V TGCA 5 cut(s) 49, 541, 708, 745, 759
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 2 cut(s) 57, 594
Hsp92I GRCGYC 2 cut(s) 57, 306
Hsp92II CATG 3 cut(s) 833, 854, 940
HspAI GCGC 3 cut(s) 342, 605, 906
KroI GCCGGC 1 cut(s) 825
KroNI GCCGGC 1 cut(s) 827
Ksp22I TGATCA 1 cut(s) 847
KspI CCGCGG 1 cut(s) 410
Kzo9I GATC 3 cut(s) 394, 660, 847
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 2 cut(s) 147, 602
Lsp1109I GCAGC 3 cut(s) 525, 692, 895
LweI GCATC 2 cut(s) 391, 732
MaeI CTAG 3 cut(s) 38, 257, 339
MaeII ACGT 2 cut(s) 57, 594
MaeIII GTNAC 2 cut(s) 293, 496
MalI GATC 3 cut(s) 396, 662, 849
MbiI CCGCTC 1 cut(s) 142
MboI GATC 3 cut(s) 394, 660, 847
MhlI GDGCHC 2 cut(s) 84, 807
MluCI AATT 5 cut(s) 44, 74, 481, 721, 808
MlyI GAGTC 2 cut(s) 479, 509
MmeI TCCRAC 3 cut(s) 288, 327, 816
MroNI GCCGGC 1 cut(s) 825
MseI TTAA 2 cut(s) 785, 946
MslI CAYNNNNRTG 1 cut(s) 855
MspA1I CMGCKG 1 cut(s) 409
MspR9I CCNGG 9 cut(s) 210, 211, 226, 245, 269, 428, 521, 560, 579
MvaI CCWGG 4 cut(s) 245, 428, 521, 560
MvnI CGCG 4 cut(s) 114, 174, 409, 464
NaeI GCCGGC 1 cut(s) 827
NciI CCSGG 5 cut(s) 210, 211, 226, 269, 579
NdeII GATC 3 cut(s) 394, 660, 847
NgoMIV GCCGGC 1 cut(s) 825
NlaIII CATG 3 cut(s) 833, 854, 940
NlaIV GGNNCC 2 cut(s) 402, 615
NmeAIII GCCGAG 3 cut(s) 298, 334, 633
NmuCI GTSAC 1 cut(s) 496
NspI RCATGY 1 cut(s) 940
PciI ACATGT 1 cut(s) 936
PciSI GCTCTTC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 171
PdiI GCCGGC 1 cut(s) 827
PfeI GAWTC 4 cut(s) 5, 358, 532, 583
PfoI TCCNGGA 1 cut(s) 426
PleI GAGTC 2 cut(s) 478, 509
PpsI GAGTC 2 cut(s) 478, 509
PscI ACATGT 1 cut(s) 936
Psp6I CCWGG 4 cut(s) 243, 426, 519, 558
PspGI CCWGG 4 cut(s) 243, 426, 519, 558
PspN4I GGNNCC 2 cut(s) 402, 615
PspPI GGNCC 5 cut(s) 219, 232, 247, 424, 492
PstI CTGCAG 1 cut(s) 543
PstNI CAGNNNCTG 2 cut(s) 421, 547
RseI CAYNNNNRTG 1 cut(s) 855
SacII CCGCGG 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 272
SaqAI TTAA 2 cut(s) 785, 946
Sau3AI GATC 3 cut(s) 394, 660, 847
Sau96I GGNCC 5 cut(s) 219, 232, 247, 424, 492
SchI GAGTC 2 cut(s) 479, 509
ScrFI CCNGG 9 cut(s) 210, 211, 226, 245, 269, 428, 521, 560, 579
SduI GDGCHC 2 cut(s) 84, 807
SfaNI GCATC 2 cut(s) 391, 732
SfcI CTRYAG 1 cut(s) 539
Sfr303I CCGCGG 1 cut(s) 410
SgrBI CCGCGG 1 cut(s) 410
SinI GGWCC 1 cut(s) 424
SmaI CCCGGG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 855
Sse9I AATT 5 cut(s) 44, 74, 481, 721, 808
SspMI CTAG 3 cut(s) 38, 257, 339
StyD4I CCNGG 9 cut(s) 208, 209, 224, 243, 267, 426, 519, 558, 577
StyI CCWWGG 1 cut(s) 791
TaaI ACNGT 4 cut(s) 163, 184, 391, 417
TaiI ACGT 2 cut(s) 60, 597
TaqI TCGA 2 cut(s) 78, 375
TaqII GACCGA 2 cut(s) 515, 857
TasI AATT 5 cut(s) 44, 74, 481, 721, 808
TauI GCSGC 9 cut(s) 95, 142, 224, 409, 412, 452, 467, 513, 577
TfiI GAWTC 4 cut(s) 5, 358, 532, 583
Tru1I TTAA 2 cut(s) 785, 946
Tru9I TTAA 2 cut(s) 785, 946
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 3 cut(s) 538, 705, 908
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 1 cut(s) 761
TspGWI ACGGA 1 cut(s) 680
TspMI CCCGGG 1 cut(s) 209
TspRI CASTG 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 2 cut(s) 74, 721
XceI RCATGY 1 cut(s) 940
XmaI CCCGGG 1 cut(s) 209
XspI CTAG 3 cut(s) 38, 257, 339
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.