Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010820

Physical Location & Seq

Genomic Coordinates Forward (+)

63288136 .. 63290931

Gene Structure 2796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG445800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGATTTCGAAGATGAACAATACCTGAAGCAAAGACTAGACGAATTGCAGAGAGACGTCTCCAAGAAGCAAAAGTTCGAACCCGCCGTCGCCGCCCTCGTCTCTCTCCTCCGCGACCGCTACTCCAACGCCTCCCAGCCGCTTCGCAAGTCCTACTACACCGTCATCTCCCGCGTCGCCACCGTCTTGAAGACCCGATACACCTCCCCCGGTTTCTGGGCCGCCGGGCTGGCCCTCTTCCGCCTCGCCCTAACCCTAGTTTCCGACCCGGCCGAGAAGAATCAATTACTCAATTACATTTCCGAGGCCGAGAAGGTCGTTCGTCAAGAAGACGAGCCTCCCAATCTCTCGCCGCCGAATCAAGGGTTTCTTTTCGAGGGGCATCTGACGGTGGATCGGGAGCCGCCGCAACCGCAGTGGCTGGTCCAGTCGAATTTCATGGCCTCCGCCGCCACTCTCTTAGCCGCCGAGTCTTCACGTTCGGGTCGACCCGAACCCGAGACCGGCGACAACAACGACGACTCCGAGAGCGCGGCGAATCTGCTGCAGTCGCTAATCGACAACCTTGACAGCGTTTTGCCGCCGGGGATTTTGGACGACGTGAGAGGAGCGCCGAGGGTGCCGCCGGCGAGTAAGAAAGTGGTGGCGAATCTTCCGGTGATTACGATTACGGAGGAGAAGCTGGAGAAGCTGGGAACAGACTGCTGCATTTGTAAAGAGATTTTGGTTGTGAATGACAAGATGCAGGAATTGCCTTGCAAGCACACTTTTCACCCACCATGTTTAAAACCTTGGCTGGTAATTATTGTTTGTTGTAAATGTTATAATGTAGATCATAATGTGATTTGCTTTGTGTCTTGTTTCGATTCAAGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

292

Amino Acids

32.62

Weight (kDa)

5.28

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_11	PF17123	234 - 262	6.5e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20910
fragaria_vesca	FvH4_2g37060
malus_domestica	MD08G1042800.v1.1 MD08G1045000.v1.1 MD08G1045700.v1.1 MD15G1046800.v1.1
prunus_persica	Prupe.1G401200_v2.0.a1 Prupe.1G401200_v2.0.a1
pyrus_communis	pycom15g04480
rosa_chinensis	RchiOBHm_Chr6g0304721
rosa_laevigata	RLG00000010956
rosa_multiflora	Rmu_co8160404.1_g000001 Rmu_sc0027256.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163560
rosa_rugosa	Rorug06G0333800
rosa_samantha	Rh6AG445800 Rh6BG455900 Rh6CG458900 Rh6DG445900
rosa_wichuraiana	Rw6G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	825
AatII	GACGTC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	487
AccII	CGCG	3 cut(s)	114, 174, 533
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	3 cut(s)	216, 362, 503
AgsI	TTSAA	2 cut(s)	190, 870
AjiI	CACGTC	1 cut(s)	601
AluBI	AGCT	2 cut(s)	682, 691
AluI	AGCT	2 cut(s)	682, 691
Alw26I	GTCTC	4 cut(s)	48, 64, 106, 494
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	5 cut(s)	219, 231, 270, 306, 441
ApeKI	GCWGC	2 cut(s)	544, 705
ApoI	RAATTY	1 cut(s)	433
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspLEI	GCGC	2 cut(s)	533, 613
AspS9I	GGNCC	3 cut(s)	219, 232, 424
AsuC2I	CCSGG	4 cut(s)	210, 226, 269, 585
AsuHPI	GGTGA	2 cut(s)	670, 764
AsuII	TTCGAA	2 cut(s)	9, 78
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	619
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbsI	GAAGAC	3 cut(s)	197, 336, 465
BbvI	GCAGC	2 cut(s)	531, 692
BceAI	ACGGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	526, 560
BcnI	CCSGG	4 cut(s)	210, 226, 269, 585
BcoDI	GTCTC	4 cut(s)	48, 64, 106, 494
BfaI	CTAG	2 cut(s)	38, 257
BfmI	CTRYAG	1 cut(s)	545
BfoI	RGCGCY	1 cut(s)	614
BglI	GCCNNNNNGGC	1 cut(s)	230
Bme1390I	CCNGG	4 cut(s)	210, 226, 269, 585
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	219, 232, 424
BmiI	GGNNCC	2 cut(s)	402, 621
BmrFI	CCNGG	4 cut(s)	210, 226, 269, 585
BmsI	GCATC	2 cut(s)	391, 732
BpiI	GAAGAC	3 cut(s)	197, 336, 465
BpmI	CTGGAG	1 cut(s)	704
Bpu14I	TTCGAA	2 cut(s)	9, 78
BpuMI	CCSGG	4 cut(s)	210, 226, 269, 585
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	5 cut(s)	208, 303, 584, 614, 791
BsaWI	WCCGGW	1 cut(s)	655
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 506, 536
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 362, 503
Bse118I	RCCGGY	2 cut(s)	503, 625
Bse1I	ACTGG	1 cut(s)	427
BseDI	CCNNGG	5 cut(s)	208, 303, 584, 614, 791
BseLI	CCNNNNNNNGG	3 cut(s)	216, 362, 503
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	3 cut(s)	98, 621, 689
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	531, 692
BseYI	CCCAGC	2 cut(s)	135, 691
Bsh1236I	CGCG	3 cut(s)	114, 174, 533
Bsh1285I	CGRYCG	2 cut(s)	118, 273
BshFI	GGCC	5 cut(s)	221, 233, 272, 308, 443
BshNI	GGYRCC	1 cut(s)	619
BsiEI	CGRYCG	2 cut(s)	118, 273
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	7 cut(s)	210, 225, 269, 504, 584, 626, 656
BslI	CCNNNNNNNGG	3 cut(s)	216, 362, 503
BsmAI	GTCTC	4 cut(s)	48, 64, 106, 494
BsmBI	CGTCTC	3 cut(s)	48, 64, 106
BsnI	GGCC	5 cut(s)	221, 233, 272, 308, 443
Bso31I	GGTCTC	1 cut(s)	494
BsoBI	CYCGRG	1 cut(s)	497
Bsp119I	TTCGAA	2 cut(s)	9, 78
Bsp143I	GATC	2 cut(s)	394, 832
BspANI	GGCC	5 cut(s)	221, 233, 272, 308, 443
BspFNI	CGCG	3 cut(s)	114, 174, 533
BspLI	GGNNCC	2 cut(s)	402, 621
BspMAI	CTGCAG	1 cut(s)	549
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	2 cut(s)	9, 78
BspT107I	GGYRCC	1 cut(s)	619
BspTNI	GGTCTC	1 cut(s)	494
BsrFI	RCCGGY	2 cut(s)	503, 625
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	2 cut(s)	503, 625
BssECI	CCNNGG	5 cut(s)	208, 303, 584, 614, 791
BssMI	GATC	2 cut(s)	394, 832
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	791
Bst4CI	ACNGT	3 cut(s)	163, 184, 391
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	751
BstBI	TTCGAA	2 cut(s)	9, 78
BstC8I	GCNNGC	3 cut(s)	231, 627, 761
BstDEI	CTNAG	1 cut(s)	460
BstFNI	CGCG	3 cut(s)	114, 174, 533
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	2 cut(s)	533, 613
BstKTI	GATC	2 cut(s)	397, 835
BstMAI	GTCTC	4 cut(s)	48, 64, 106, 494
BstMBI	GATC	2 cut(s)	394, 832
BstMCI	CGRYCG	2 cut(s)	118, 273
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 230, 412, 449, 550, 619, 688, 751, 760
BstSCI	CCNGG	4 cut(s)	208, 224, 267, 583
BstSFI	CTRYAG	1 cut(s)	545
BstUI	CGCG	3 cut(s)	114, 174, 533
BstV1I	GCAGC	2 cut(s)	531, 692
BstV2I	GAAGAC	3 cut(s)	197, 336, 465
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	5 cut(s)	221, 233, 272, 308, 443
BtrI	CACGTC	1 cut(s)	601
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	3 cut(s)	231, 627, 761
CaiI	CAGNNNCTG	1 cut(s)	421
CfoI	GCGC	2 cut(s)	533, 613
Cfr10I	RCCGGY	2 cut(s)	503, 625
Cfr13I	GGNCC	3 cut(s)	219, 232, 424
CseI	GACGC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	2 cut(s)	439, 780
DdeI	CTNAG	1 cut(s)	460
DpnI	GATC	2 cut(s)	396, 834
DpnII	GATC	2 cut(s)	394, 832
DraI	TTTAAA	1 cut(s)	786
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	2 cut(s)	230, 436
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	791
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	424
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	791
Esp3I	CGTCTC	3 cut(s)	48, 64, 106
FaeI	CATG	2 cut(s)	442, 783
FaiI	YATR	4 cut(s)	440, 781, 825, 837
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	2 cut(s)	438, 779
FauI	CCCGC	2 cut(s)	91, 179
FblI	GTMKAC	1 cut(s)	487
FspBI	CTAG	2 cut(s)	38, 257
GlaI	GCGC	2 cut(s)	532, 612
GsaI	CCCAGC	2 cut(s)	139, 695
GsuI	CTGGAG	1 cut(s)	704
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	5 cut(s)	221, 233, 272, 308, 443
HapII	CCGG	7 cut(s)	210, 225, 269, 504, 584, 626, 656
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	533, 613
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	442, 783
Hin6I	GCGC	2 cut(s)	531, 611
HinP1I	GCGC	2 cut(s)	531, 611
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	7 cut(s)	280, 358, 470, 521, 538, 649, 866
HpaII	CCGG	7 cut(s)	210, 225, 269, 504, 584, 626, 656
HphI	GGTGA	2 cut(s)	670, 764
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	4 cut(s)	265, 304, 387, 526
Hpy188III	TCNNGA	3 cut(s)	187, 326, 398
Hpy8I	GTNNAC	1 cut(s)	488
Hpy99I	CGWCG	4 cut(s)	92, 179, 521, 602
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	3 cut(s)	163, 184, 391
HpyCH4IV	ACGT	3 cut(s)	57, 478, 600
HpyCH4V	TGCA	5 cut(s)	49, 547, 708, 745, 759
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 230, 412, 449, 550, 619, 688, 751, 760
HpyF3I	CTNAG	1 cut(s)	460
HpySE526I	ACGT	3 cut(s)	57, 478, 600
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	442, 783
HspAI	GCGC	2 cut(s)	531, 611
KroI	GCCGGC	1 cut(s)	625
KroNI	GCCGGC	1 cut(s)	627
Kzo9I	GATC	2 cut(s)	394, 832
LmnI	GCTCC	2 cut(s)	400, 608
Lsp1109I	GCAGC	2 cut(s)	531, 692
LweI	GCATC	2 cut(s)	391, 732
MaeI	CTAG	2 cut(s)	38, 257
MaeII	ACGT	3 cut(s)	57, 478, 600
MalI	GATC	2 cut(s)	396, 834
MboI	GATC	2 cut(s)	394, 832
MboII	GAAGA	7 cut(s)	23, 202, 229, 289, 341, 465, 644
MluCI	AATT	6 cut(s)	44, 284, 292, 433, 749, 801
MlyI	GAGTC	2 cut(s)	479, 515
MmeI	TCCRAC	2 cut(s)	150, 288
MreI	CGCCGGCG	1 cut(s)	625
MroNI	GCCGGC	1 cut(s)	625
MseI	TTAA	1 cut(s)	785
MspI	CCGG	7 cut(s)	210, 225, 269, 504, 584, 626, 656
MspR9I	CCNGG	4 cut(s)	210, 226, 269, 585
MvnI	CGCG	3 cut(s)	114, 174, 533
MwoI	GCNNNNNNNGC	9 cut(s)	92, 230, 412, 449, 550, 619, 688, 751, 760
NaeI	GCCGGC	1 cut(s)	627
NciI	CCSGG	4 cut(s)	210, 226, 269, 585
NdeII	GATC	2 cut(s)	394, 832
NgoMIV	GCCGGC	1 cut(s)	625
NlaIII	CATG	2 cut(s)	442, 783
NlaIV	GGNNCC	2 cut(s)	402, 621
NmeAIII	GCCGAG	4 cut(s)	298, 334, 493, 639
NspV	TTCGAA	2 cut(s)	9, 78
PcsI	WCGNNNNNNNCGW	4 cut(s)	84, 96, 484, 522
PdiI	GCCGGC	1 cut(s)	627
PfeI	GAWTC	5 cut(s)	280, 358, 538, 649, 866
PleI	GAGTC	2 cut(s)	478, 515
PpsI	GAGTC	2 cut(s)	478, 515
PsiI	TTATAA	1 cut(s)	825
PspFI	CCCAGC	2 cut(s)	135, 691
PspN4I	GGNNCC	2 cut(s)	402, 621
PspPI	GGNCC	3 cut(s)	219, 232, 424
PstI	CTGCAG	1 cut(s)	549
PstNI	CAGNNNCTG	1 cut(s)	421
SalI	GTCGAC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	785
Sau3AI	GATC	2 cut(s)	394, 832
Sau96I	GGNCC	3 cut(s)	219, 232, 424
SchI	GAGTC	2 cut(s)	479, 515
ScrFI	CCNGG	4 cut(s)	210, 226, 269, 585
SfaNI	GCATC	2 cut(s)	391, 732
SfcI	CTRYAG	1 cut(s)	545
SfuI	TTCGAA	2 cut(s)	9, 78
SgrAI	CRCCGGYG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	424
Sse9I	AATT	6 cut(s)	44, 284, 292, 433, 749, 801
SspMI	CTAG	2 cut(s)	38, 257
StyD4I	CCNGG	4 cut(s)	208, 224, 267, 583
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	3 cut(s)	163, 184, 391
TaiI	ACGT	3 cut(s)	60, 481, 603
TaqI	TCGA	7 cut(s)	9, 78, 375, 431, 487, 558, 864
TasI	AATT	6 cut(s)	44, 284, 292, 433, 749, 801
TfiI	GAWTC	5 cut(s)	280, 358, 538, 649, 866
Tru1I	TTAA	1 cut(s)	785
Tru9I	TTAA	1 cut(s)	785
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	2 cut(s)	544, 705
TspDTI	ATGAA	2 cut(s)	30, 427
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	2 cut(s)	38, 257
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.