Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010820

Physical Location & Seq

Genomic Coordinates Reverse (-)

5776424 .. 5777035

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCCTCCGCCGCCACTCTCTTCGCCGCCGAGTCTTCGCGTCCGGGTCGGCCCGAACCCGAGACCGGCGACAACAACGACGACTCCGAGAGCGCGGCGAATCTGCTGCAGTCGCTAATCGACAACCTTGACAGCGTTTTGCCGCCGGGGATTTTGGACGACGTGAGAGGAGCGCCGAGGGTGCCGCCGGCGAGTAAGAAAGTGGTGGCGAATCTTCCGGTGATTACGATTACGGAGGAGAAGCTGGGAGAGGAAGCAGACTGCTGCATTTGTAAAGAGATTTTGGTTGTGAATGACAAGATGCAGGAATTGCCTTGCAAGCACACTTTCCACCCACCATGTTTAAAACCTTGGCTGGATGAGCACAATTCGTGTCCAATATGCCGGCATGAGTTGGAGACTGATGATCATGCATATGAGAGCTGGAAGGAGAGGGAGAGGGAGGCTGAAGAAGACAGAAAAGGCGCTGCCAATGCGGTTCGGGGTGGAGAATACATGTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

168

Amino Acids

18.58

Weight (kDa)

4.66

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	87 - 129	3.1e-12	Ring finger domain
zf-RING_11	PF17123	87 - 115	2.9e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	88 - 128	3.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	88 - 128	9.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20910
fragaria_vesca	FvH4_2g37060
malus_domestica	MD08G1042800.v1.1 MD08G1045000.v1.1 MD08G1045700.v1.1 MD15G1046800.v1.1
prunus_persica	Prupe.1G401200_v2.0.a1 Prupe.1G401200_v2.0.a1
pyrus_communis	pycom15g04480
rosa_chinensis	RchiOBHm_Chr6g0304721
rosa_laevigata	RLG00000010956
rosa_multiflora	Rmu_co8160404.1_g000001 Rmu_sc0027256.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163560
rosa_rugosa	Rorug06G0333800
rosa_samantha	Rh6AG445800 Rh6BG455900 Rh6CG458900 Rh6DG445900
rosa_wichuraiana	Rw6G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	2 cut(s)	40, 95
AciI	CCGC	7 cut(s)	9, 12, 27, 95, 143, 185, 476
AcuI	CTGAAG	1 cut(s)	468
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	495
AjiI	CACGTC	1 cut(s)	163
AluBI	AGCT	2 cut(s)	244, 423
AluI	AGCT	2 cut(s)	244, 423
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	2 cut(s)	56, 392
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	2 cut(s)	3, 50
ApeKI	GCWGC	3 cut(s)	106, 264, 467
AspLEI	GCGC	3 cut(s)	95, 175, 467
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	2 cut(s)	45, 147
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	181
BbsI	GAAGAC	2 cut(s)	27, 459
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	93, 251, 454
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	2 cut(s)	45, 147
BcoDI	GTCTC	2 cut(s)	56, 392
BfmI	CTRYAG	1 cut(s)	107
BfoI	RGCGCY	2 cut(s)	176, 468
BisI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 265, 468
BlsI	GCNGC	8 cut(s)	13, 28, 97, 108, 144, 186, 266, 469
Bme1390I	CCNGG	2 cut(s)	45, 147
BmeT110I	CYCGRG	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	45, 147
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	27, 459
BpuMI	CCSGG	2 cut(s)	45, 147
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	146, 176, 350
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	3 cut(s)	65, 187, 384
BseDI	CCNNGG	3 cut(s)	146, 176, 350
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseRI	GAGGAG	2 cut(s)	183, 251
BseXI	GCAGC	3 cut(s)	93, 251, 454
BseYI	CCCAGC	1 cut(s)	244
Bsh1236I	CGCG	2 cut(s)	40, 95
BshFI	GGCC	2 cut(s)	5, 52
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	6 cut(s)	44, 66, 146, 188, 218, 385
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	56, 392
BsnI	GGCC	2 cut(s)	5, 52
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	7 cut(s)	9, 12, 27, 95, 143, 185, 476
BspANI	GGCC	2 cut(s)	5, 52
BspFNI	CGCG	2 cut(s)	40, 95
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	56
BsrFI	RCCGGY	3 cut(s)	65, 187, 384
BssAI	RCCGGY	3 cut(s)	65, 187, 384
BssECI	CCNNGG	3 cut(s)	146, 176, 350
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	189, 320, 386
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	2 cut(s)	40, 95
BstH2I	RGCGCY	2 cut(s)	176, 468
BstHHI	GCGC	3 cut(s)	95, 175, 467
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	2 cut(s)	56, 392
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 112, 181, 310, 319, 361, 473
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	2 cut(s)	43, 145
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	2 cut(s)	40, 95
BstV1I	GCAGC	3 cut(s)	93, 251, 454
BstV2I	GAAGAC	2 cut(s)	27, 459
BsuRI	GGCC	2 cut(s)	5, 52
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	364
Cac8I	GCNNGC	3 cut(s)	189, 320, 386
CfoI	GCGC	3 cut(s)	95, 175, 467
Cfr10I	RCCGGY	3 cut(s)	65, 187, 384
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	1 cut(s)	29
CviAII	CATG	4 cut(s)	339, 389, 410, 496
CviJI	RGCY	6 cut(s)	5, 52, 244, 355, 423, 446
CviKI_1	RGCY	6 cut(s)	5, 52, 244, 355, 423, 446
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	4 cut(s)	342, 392, 413, 499
FaiI	YATR	8 cut(s)	340, 382, 390, 411, 415, 417, 497, 501
FatI	CATG	4 cut(s)	338, 388, 409, 495
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 265, 468
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 265, 468
GlaI	GCGC	3 cut(s)	94, 174, 466
GluI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 265, 468
GsaI	CCCAGC	1 cut(s)	248
HaeII	RGCGCY	2 cut(s)	176, 468
HaeIII	GGCC	2 cut(s)	5, 52
HapII	CCGG	6 cut(s)	44, 66, 146, 188, 218, 385
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	3 cut(s)	95, 175, 467
Hin1II	CATG	4 cut(s)	342, 392, 413, 499
Hin6I	GCGC	3 cut(s)	93, 173, 465
HinP1I	GCGC	3 cut(s)	93, 173, 465
HinfI	GANTC	4 cut(s)	32, 83, 100, 211
HpaII	CCGG	6 cut(s)	44, 66, 146, 188, 218, 385
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	88
Hpy99I	CGWCG	2 cut(s)	83, 164
HpyAV	CCTTC	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	109, 267, 304, 318, 413
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 112, 181, 310, 319, 361, 473
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	342, 392, 413, 499
HspAI	GCGC	3 cut(s)	93, 173, 465
KroI	GCCGGC	2 cut(s)	187, 384
KroNI	GCCGGC	2 cut(s)	189, 386
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	3 cut(s)	93, 251, 454
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	1 cut(s)	162
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	5 cut(s)	13, 27, 206, 461, 464
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	2 cut(s)	308, 367
MlyI	GAGTC	2 cut(s)	41, 77
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	8 cut(s)	16, 161, 171, 229, 244, 426, 432, 436
Mph1103I	ATGCAT	1 cut(s)	415
MreI	CGCCGGCG	1 cut(s)	187
MroNI	GCCGGC	2 cut(s)	187, 384
MseI	TTAA	2 cut(s)	344, 505
MslI	CAYNNNNRTG	1 cut(s)	414
MspI	CCGG	6 cut(s)	44, 66, 146, 188, 218, 385
MspR9I	CCNGG	2 cut(s)	45, 147
MvnI	CGCG	2 cut(s)	40, 95
MwoI	GCNNNNNNNGC	7 cut(s)	11, 112, 181, 310, 319, 361, 473
NaeI	GCCGGC	2 cut(s)	189, 386
NciI	CCSGG	2 cut(s)	45, 147
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	1 cut(s)	406
NgoMIV	GCCGGC	2 cut(s)	187, 384
NlaIII	CATG	4 cut(s)	342, 392, 413, 499
NlaIV	GGNNCC	1 cut(s)	183
NmeAIII	GCCGAG	2 cut(s)	55, 201
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	1 cut(s)	499
PciI	ACATGT	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdiI	GCCGGC	2 cut(s)	189, 386
PfeI	GAWTC	2 cut(s)	100, 211
PkrI	GCNGC	8 cut(s)	13, 28, 97, 108, 144, 186, 266, 469
PleI	GAGTC	2 cut(s)	40, 77
PpsI	GAGTC	2 cut(s)	40, 77
PscI	ACATGT	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	344, 505
SatI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 265, 468
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	2 cut(s)	41, 77
ScrFI	CCNGG	2 cut(s)	45, 147
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	5 cut(s)	129, 165, 246, 352, 425
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	107
SgrAI	CRCCGGYG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	2 cut(s)	308, 367
SsiI	CCGC	7 cut(s)	9, 12, 27, 95, 143, 185, 476
StyD4I	CCNGG	2 cut(s)	43, 145
StyI	CCWWGG	1 cut(s)	350
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	308, 367
TauI	GCSGC	5 cut(s)	14, 29, 98, 145, 187
TfiI	GAWTC	2 cut(s)	100, 211
Tru1I	TTAA	2 cut(s)	344, 505
Tru9I	TTAA	2 cut(s)	344, 505
TseI	GCWGC	3 cut(s)	106, 264, 467
TspGWI	ACGGA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	499
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.