Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027256.1

Orthogroup ID

OG0010820

Physical Location & Seq

Genomic Coordinates Reverse (-)

1210 .. 1828

Gene Structure 619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027256.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggcctccgccgccactctcttcgccgccgagtcttcacgttcgggtcgacccgaacccgagaccggcgacaacaacgacgactccgagagcgcggcgaatctgctgcagtcgctaatcaacaaccttgacagcgttttgccgccggggattttggacgacgtgagaggagcgccgagggtgccgccggcgagtaagaaagtggtggcgaatcttccggtgattacgattacggaggagaatctgaagaagctgggagcagactgctgcatttgtaaagagattttggttgtgaatgacaagatgcaggaattgccttgcaagcacaattttcacccaccatgtttaaaaccttggctggatgagcacaattcgtgtccaatatgccggcatgagttggagactgatgatcatgcatatgagagctggaaggagagggagagggaggctgaagaagacagaaaaggcgctgccaatgcggttcggggtggtgaatacatgtatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

169

Amino Acids

18.68

Weight (kDa)

4.89

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20910
fragaria_vesca	FvH4_2g37060
malus_domestica	MD08G1042800.v1.1 MD08G1045000.v1.1 MD08G1045700.v1.1 MD15G1046800.v1.1
prunus_persica	Prupe.1G401200_v2.0.a1 Prupe.1G401200_v2.0.a1
pyrus_communis	pycom15g04480
rosa_chinensis	RchiOBHm_Chr6g0304721
rosa_laevigata	RLG00000010956
rosa_multiflora	Rmu_co8160404.1_g000001 Rmu_sc0027256.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163560
rosa_rugosa	Rorug06G0333800
rosa_samantha	Rh6AG445800 Rh6BG455900 Rh6CG458900 Rh6DG445900
rosa_wichuraiana	Rw6G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	49
AccII	CGCG	1 cut(s)	95
AciI	CCGC	7 cut(s)	9, 12, 27, 95, 143, 185, 479
AcuI	CTGAAG	2 cut(s)	266, 471
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	498
AjiI	CACGTC	1 cut(s)	163
AluBI	AGCT	2 cut(s)	253, 426
AluI	AGCT	2 cut(s)	253, 426
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	56, 395
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	106, 267, 470
AspLEI	GCGC	3 cut(s)	95, 175, 470
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	232, 326, 503
AvaI	CYCGRG	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	181
BbsI	GAAGAC	2 cut(s)	27, 462
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	93, 254, 457
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	56, 395
BfmI	CTRYAG	1 cut(s)	107
BfoI	RGCGCY	2 cut(s)	176, 471
BisI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 268, 471
BlsI	GCNGC	8 cut(s)	13, 28, 97, 108, 144, 186, 269, 472
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	2 cut(s)	27, 462
BpuMI	CCSGG	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	146, 176, 353
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	3 cut(s)	65, 187, 387
BseDI	CCNNGG	3 cut(s)	146, 176, 353
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseRI	GAGGAG	2 cut(s)	183, 251
BseXI	GCAGC	3 cut(s)	93, 254, 457
BseYI	CCCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	5 cut(s)	66, 146, 188, 218, 388
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	56, 395
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	7 cut(s)	9, 12, 27, 95, 143, 185, 479
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	56
BsrFI	RCCGGY	3 cut(s)	65, 187, 387
BssAI	RCCGGY	3 cut(s)	65, 187, 387
BssECI	CCNNGG	3 cut(s)	146, 176, 353
BssMI	GATC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	189, 323, 389
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	2 cut(s)	176, 471
BstHHI	GCGC	3 cut(s)	95, 175, 470
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	2 cut(s)	56, 395
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 112, 181, 313, 322, 364, 476
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	93, 254, 457
BstV2I	GAAGAC	2 cut(s)	27, 462
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	3 cut(s)	189, 323, 389
CfoI	GCGC	3 cut(s)	95, 175, 470
Cfr10I	RCCGGY	3 cut(s)	65, 187, 387
CviAII	CATG	4 cut(s)	342, 392, 413, 499
CviJI	RGCY	5 cut(s)	5, 253, 358, 426, 449
CviKI_1	RGCY	5 cut(s)	5, 253, 358, 426, 449
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraI	TTTAAA	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	56
Eco57I	CTGAAG	2 cut(s)	266, 471
Eco88I	CYCGRG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	353
EcoT22I	ATGCAT	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	4 cut(s)	345, 395, 416, 502
FaiI	YATR	8 cut(s)	343, 385, 393, 414, 418, 420, 500, 504
FatI	CATG	4 cut(s)	341, 391, 412, 498
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 268, 471
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 268, 471
GlaI	GCGC	3 cut(s)	94, 174, 469
GluI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 268, 471
GsaI	CCCAGC	1 cut(s)	257
HaeII	RGCGCY	2 cut(s)	176, 471
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	5 cut(s)	66, 146, 188, 218, 388
HhaI	GCGC	3 cut(s)	95, 175, 470
Hin1II	CATG	4 cut(s)	345, 395, 416, 502
Hin6I	GCGC	3 cut(s)	93, 173, 468
HinP1I	GCGC	3 cut(s)	93, 173, 468
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	5 cut(s)	32, 83, 100, 211, 241
HpaII	CCGG	5 cut(s)	66, 146, 188, 218, 388
HphI	GGTGA	3 cut(s)	232, 326, 503
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	88, 246
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	2 cut(s)	83, 164
HpyAV	CCTTC	1 cut(s)	424
HpyCH4IV	ACGT	2 cut(s)	40, 162
HpyCH4V	TGCA	5 cut(s)	109, 270, 307, 321, 416
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 112, 181, 313, 322, 364, 476
HpySE526I	ACGT	2 cut(s)	40, 162
Hsp92II	CATG	4 cut(s)	345, 395, 416, 502
HspAI	GCGC	3 cut(s)	93, 173, 468
KroI	GCCGGC	2 cut(s)	187, 387
KroNI	GCCGGC	2 cut(s)	189, 389
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	2 cut(s)	170, 257
LpnPI	CCDG	9 cut(s)	79, 159, 201, 231, 239, 293, 344, 401, 412
Lsp1109I	GCAGC	3 cut(s)	93, 254, 457
LweI	GCATC	1 cut(s)	294
MaeII	ACGT	2 cut(s)	40, 162
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	6 cut(s)	13, 27, 206, 259, 464, 467
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	3 cut(s)	311, 328, 370
MlyI	GAGTC	2 cut(s)	41, 77
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	7 cut(s)	16, 161, 171, 229, 429, 435, 439
Mph1103I	ATGCAT	1 cut(s)	418
MreI	CGCCGGCG	1 cut(s)	187
MroNI	GCCGGC	2 cut(s)	187, 387
MseI	TTAA	2 cut(s)	347, 508
MslI	CAYNNNNRTG	1 cut(s)	417
MspI	CCGG	5 cut(s)	66, 146, 188, 218, 388
MspR9I	CCNGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	7 cut(s)	11, 112, 181, 313, 322, 364, 476
NaeI	GCCGGC	2 cut(s)	189, 389
NciI	CCSGG	1 cut(s)	147
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	1 cut(s)	409
NgoMIV	GCCGGC	2 cut(s)	187, 387
NlaIII	CATG	4 cut(s)	345, 395, 416, 502
NlaIV	GGNNCC	1 cut(s)	183
NmeAIII	GCCGAG	2 cut(s)	55, 201
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	502
PciI	ACATGT	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	2 cut(s)	46, 84
PdiI	GCCGGC	2 cut(s)	189, 389
PfeI	GAWTC	3 cut(s)	100, 211, 241
PkrI	GCNGC	8 cut(s)	13, 28, 97, 108, 144, 186, 269, 472
PleI	GAGTC	2 cut(s)	40, 77
PpsI	GAGTC	2 cut(s)	40, 77
PscI	ACATGT	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	417
SalI	GTCGAC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	347, 508
SatI	GCNGC	8 cut(s)	12, 27, 96, 107, 143, 185, 268, 471
Sau3AI	GATC	1 cut(s)	409
SchI	GAGTC	2 cut(s)	41, 77
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	6 cut(s)	43, 129, 165, 255, 355, 428
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	107
SgrAI	CRCCGGYG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	3 cut(s)	311, 328, 370
SsiI	CCGC	7 cut(s)	9, 12, 27, 95, 143, 185, 479
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	353
TaiI	ACGT	2 cut(s)	43, 165
TaqI	TCGA	1 cut(s)	49
TasI	AATT	3 cut(s)	311, 328, 370
TauI	GCSGC	5 cut(s)	14, 29, 98, 145, 187
TfiI	GAWTC	3 cut(s)	100, 211, 241
Tru1I	TTAA	2 cut(s)	347, 508
Tru9I	TTAA	2 cut(s)	347, 508
TseI	GCWGC	3 cut(s)	106, 267, 470
TspGWI	ACGGA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.