Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010820

Physical Location & Seq

Genomic Coordinates Forward (+)

61991904 .. 61993421

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG445900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATTTCGAAGATGAACAATACCTGAAGCAAAGACTAGACGAGTTGCAGAGAGACGTCTCCAAGAAGCAGAAGTTCGAACCCGCCGTGGCCGCTCTCGTCTCTCTCCTCCGCGACCGCTACTCCTCCGCCTCCCCGCCGCTTCGCAAGTCCTACTATACCGTCATCTCCCGCGTCGCCACCGTCTTGAAGACCCGCTACACCTCCCCCGGTTTCTGGGCCGCCGGGTTGGCCCTCTTCCGCCTCGCCCTAACCCTAGTTTCCGACCCGGCCGAGAAGAATCAATTACTCAATTACATTTCCGAGGCCGAGAAGGTCGTTCGCCAAGAAGACGAGCCTCCCAATCTCTCGCCGCCGAATCAAGGGTTTCTTTTCGAGGGGCATCTGACGGTGGATCGGGAGCCGCCGCAACCGCAGTGGCTGGTCCAGTCGAATCTCATGGCCTCCGCCGCCACTCTCTTCGCCTCCGAGTCTTCGCGTTCGGGTCGACCCGAACCCGAGACCGGCGACAACAACGAGAGCGCGGCGAATCTGCTGCAGTCGCTAATCGACGACCTTGACAGCGTTTTGCCGCCTGGGATTTTGGACGACGTGAGAGGAGCGCCGAGGGTGCCGCCGGCGAGTAAGAAAGTGGTGGCGAATCTTCCGGTGATTACGATTACGGAGGAGAAGCTGGGAGAGGAAGCAGACTGCTGCATTTGTAAAGAGGTTTTGGTTGTGAATGACAAGATGCAGGAATTGCCTTGCAAGCACACTTTTCACCCACCATGTTTAAAACCTTGGCTGGATGAGCACAATTCGTGTCCAATATGCCGGCATGAGTTGGAGACTGATGATCATGCATATGAGAGCTGGAAGGAGAGGGAGAGGGAGGCTGAACAAGACAGAAAAGGCGCTGCCAATGCGGTTCGGGGTGGTGAATACATGTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

311

Amino Acids

34.95

Weight (kDa)

5.0

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	230 - 272	3.8e-12	Ring finger domain
zf-RING_11	PF17123	230 - 258	1.9e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	231 - 271	5.4e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20910
fragaria_vesca	FvH4_2g37060
malus_domestica	MD08G1042800.v1.1 MD08G1045000.v1.1 MD08G1045700.v1.1 MD15G1046800.v1.1
prunus_persica	Prupe.1G401200_v2.0.a1 Prupe.1G401200_v2.0.a1
pyrus_communis	pycom15g04480
rosa_chinensis	RchiOBHm_Chr6g0304721
rosa_laevigata	RLG00000010956
rosa_multiflora	Rmu_co8160404.1_g000001 Rmu_sc0027256.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163560
rosa_rugosa	Rorug06G0333800
rosa_samantha	Rh6AG445800 Rh6BG455900 Rh6CG458900 Rh6DG445900
rosa_wichuraiana	Rw6G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	487
AccII	CGCG	4 cut(s)	114, 174, 478, 524
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	2 cut(s)	90, 270
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	3 cut(s)	216, 362, 503
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	592
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	2 cut(s)	673, 852
AluI	AGCT	2 cut(s)	673, 852
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	5 cut(s)	48, 64, 106, 494, 821
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	6 cut(s)	90, 219, 231, 270, 306, 441
ApeKI	GCWGC	3 cut(s)	535, 693, 896
AspLEI	GCGC	3 cut(s)	524, 604, 896
AspS9I	GGNCC	3 cut(s)	219, 232, 424
AsuC2I	CCSGG	3 cut(s)	210, 226, 269
AsuHPI	GGTGA	3 cut(s)	661, 752, 929
AsuII	TTCGAA	2 cut(s)	9, 78
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbsI	GAAGAC	3 cut(s)	197, 336, 465
Bbv12I	GWGCWC	1 cut(s)	795
BbvI	GCAGC	3 cut(s)	522, 680, 883
BceAI	ACGGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BciT130I	CCWGG	1 cut(s)	576
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	3 cut(s)	210, 226, 269
BcoDI	GTCTC	5 cut(s)	48, 64, 106, 494, 821
BfaI	CTAG	2 cut(s)	38, 257
BfmI	CTRYAG	1 cut(s)	536
BfoI	RGCGCY	2 cut(s)	605, 897
BglI	GCCNNNNNGGC	1 cut(s)	230
Bme1390I	CCNGG	4 cut(s)	210, 226, 269, 576
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	592
BmgT120I	GGNCC	3 cut(s)	219, 232, 424
BmiI	GGNNCC	2 cut(s)	402, 612
BmrFI	CCNGG	4 cut(s)	210, 226, 269, 576
BmsI	GCATC	2 cut(s)	391, 720
BpiI	GAAGAC	3 cut(s)	197, 336, 465
Bpu14I	TTCGAA	2 cut(s)	9, 78
BpuMI	CCSGG	3 cut(s)	210, 226, 269
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	6 cut(s)	87, 208, 303, 575, 605, 779
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 362, 503
Bse118I	RCCGGY	3 cut(s)	503, 616, 813
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	6 cut(s)	87, 208, 303, 575, 605, 779
BseGI	GGATG	1 cut(s)	793
BseLI	CCNNNNNNNGG	3 cut(s)	216, 362, 503
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	4 cut(s)	98, 115, 612, 680
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	3 cut(s)	522, 680, 883
BseYI	CCCAGC	1 cut(s)	673
Bsh1236I	CGCG	4 cut(s)	114, 174, 478, 524
Bsh1285I	CGRYCG	2 cut(s)	118, 273
BshFI	GGCC	6 cut(s)	92, 221, 233, 272, 308, 443
BshNI	GGYRCC	1 cut(s)	610
BsiEI	CGRYCG	2 cut(s)	118, 273
BsiHKAI	GWGCWC	1 cut(s)	795
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	7 cut(s)	210, 225, 269, 504, 617, 647, 814
BslI	CCNNNNNNNGG	3 cut(s)	216, 362, 503
BsmAI	GTCTC	5 cut(s)	48, 64, 106, 494, 821
BsmBI	CGTCTC	3 cut(s)	48, 64, 106
BsnI	GGCC	6 cut(s)	92, 221, 233, 272, 308, 443
Bso31I	GGTCTC	1 cut(s)	494
BsoBI	CYCGRG	1 cut(s)	497
Bsp119I	TTCGAA	2 cut(s)	9, 78
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	2 cut(s)	394, 835
BspANI	GGCC	6 cut(s)	92, 221, 233, 272, 308, 443
BspFNI	CGCG	4 cut(s)	114, 174, 478, 524
BspLI	GGNNCC	2 cut(s)	402, 612
BspMAI	CTGCAG	1 cut(s)	540
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	2 cut(s)	9, 78
BspT107I	GGYRCC	1 cut(s)	610
BspTNI	GGTCTC	1 cut(s)	494
BsrBI	CCGCTC	1 cut(s)	95
BsrFI	RCCGGY	3 cut(s)	503, 616, 813
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	3 cut(s)	503, 616, 813
BssECI	CCNNGG	6 cut(s)	87, 208, 303, 575, 605, 779
BssMI	GATC	2 cut(s)	394, 835
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	779
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	3 cut(s)	163, 184, 391
Bst6I	CTCTTC	2 cut(s)	242, 464
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	739
BstBI	TTCGAA	2 cut(s)	9, 78
BstC8I	GCNNGC	3 cut(s)	618, 749, 815
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	793
BstFNI	CGCG	4 cut(s)	114, 174, 478, 524
BstH2I	RGCGCY	2 cut(s)	605, 897
BstHHI	GCGC	3 cut(s)	524, 604, 896
BstKTI	GATC	2 cut(s)	397, 838
BstMAI	GTCTC	5 cut(s)	48, 64, 106, 494, 821
BstMBI	GATC	2 cut(s)	394, 835
BstMCI	CGRYCG	2 cut(s)	118, 273
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	928
BstSCI	CCNGG	4 cut(s)	208, 224, 267, 574
BstSFI	CTRYAG	1 cut(s)	536
BstUI	CGCG	4 cut(s)	114, 174, 478, 524
BstV1I	GCAGC	3 cut(s)	522, 680, 883
BstV2I	GAAGAC	3 cut(s)	197, 336, 465
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	6 cut(s)	92, 221, 233, 272, 308, 443
BtgI	CCRYGG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	793
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	3 cut(s)	618, 749, 815
CaiI	CAGNNNCTG	1 cut(s)	421
CfoI	GCGC	3 cut(s)	524, 604, 896
Cfr10I	RCCGGY	3 cut(s)	503, 616, 813
Cfr13I	GGNCC	3 cut(s)	219, 232, 424
CseI	GACGC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	5 cut(s)	439, 768, 818, 839, 925
DpnI	GATC	2 cut(s)	396, 837
DpnII	GATC	2 cut(s)	394, 835
DraI	TTTAAA	1 cut(s)	774
EaeI	YGGCCR	2 cut(s)	90, 270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	242, 464
EarI	CTCTTC	2 cut(s)	242, 464
EciI	GGCGGA	3 cut(s)	118, 230, 436
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	779
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	424
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	779
EcoT22I	ATGCAT	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	779
Esp3I	CGTCTC	3 cut(s)	48, 64, 106
FaeI	CATG	5 cut(s)	442, 771, 821, 842, 928
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	5 cut(s)	438, 767, 817, 838, 924
FauI	CCCGC	4 cut(s)	91, 144, 179, 203
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	835
FblI	GTMKAC	1 cut(s)	487
FokI	GGATG	1 cut(s)	800
FspBI	CTAG	2 cut(s)	38, 257
GlaI	GCGC	3 cut(s)	523, 603, 895
GsaI	CCCAGC	1 cut(s)	677
HaeII	RGCGCY	2 cut(s)	605, 897
HaeIII	GGCC	6 cut(s)	92, 221, 233, 272, 308, 443
HapII	CCGG	7 cut(s)	210, 225, 269, 504, 617, 647, 814
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	3 cut(s)	524, 604, 896
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	442, 771, 821, 842, 928
Hin6I	GCGC	3 cut(s)	522, 602, 894
HinP1I	GCGC	3 cut(s)	522, 602, 894
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	6 cut(s)	280, 358, 433, 470, 529, 640
HpaII	CCGG	7 cut(s)	210, 225, 269, 504, 617, 647, 814
HphI	GGTGA	3 cut(s)	661, 752, 929
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	4 cut(s)	265, 304, 387, 469
Hpy188III	TCNNGA	2 cut(s)	187, 398
Hpy8I	GTNNAC	1 cut(s)	488
Hpy99I	CGWCG	3 cut(s)	179, 554, 593
HpyAV	CCTTC	2 cut(s)	307, 850
HpyCH4III	ACNGT	3 cut(s)	163, 184, 391
HpyCH4IV	ACGT	2 cut(s)	57, 591
HpyCH4V	TGCA	6 cut(s)	49, 538, 696, 733, 747, 842
HpySE526I	ACGT	2 cut(s)	57, 591
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	442, 771, 821, 842, 928
HspAI	GCGC	3 cut(s)	522, 602, 894
KroI	GCCGGC	2 cut(s)	616, 813
KroNI	GCCGGC	2 cut(s)	618, 815
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	2 cut(s)	394, 835
LmnI	GCTCC	2 cut(s)	400, 599
Lsp1109I	GCAGC	3 cut(s)	522, 680, 883
LweI	GCATC	2 cut(s)	391, 720
MaeI	CTAG	2 cut(s)	38, 257
MaeII	ACGT	2 cut(s)	57, 591
MalI	GATC	2 cut(s)	396, 837
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	2 cut(s)	394, 835
MboII	GAAGA	8 cut(s)	23, 202, 229, 289, 341, 451, 465, 635
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	4 cut(s)	284, 292, 737, 796
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	2 cut(s)	288, 804
Mph1103I	ATGCAT	1 cut(s)	844
MreI	CGCCGGCG	1 cut(s)	616
MroNI	GCCGGC	2 cut(s)	616, 813
MseI	TTAA	2 cut(s)	773, 934
MslI	CAYNNNNRTG	1 cut(s)	843
MspI	CCGG	7 cut(s)	210, 225, 269, 504, 617, 647, 814
MspR9I	CCNGG	4 cut(s)	210, 226, 269, 576
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	4 cut(s)	114, 174, 478, 524
NaeI	GCCGGC	2 cut(s)	618, 815
NciI	CCSGG	3 cut(s)	210, 226, 269
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	2 cut(s)	394, 835
NgoMIV	GCCGGC	2 cut(s)	616, 813
NlaIII	CATG	5 cut(s)	442, 771, 821, 842, 928
NlaIV	GGNNCC	2 cut(s)	402, 612
NmeAIII	GCCGAG	3 cut(s)	298, 334, 630
NsiI	ATGCAT	1 cut(s)	844
NspI	RCATGY	1 cut(s)	928
NspV	TTCGAA	2 cut(s)	9, 78
PciI	ACATGT	1 cut(s)	924
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdiI	GCCGGC	2 cut(s)	618, 815
PfeI	GAWTC	5 cut(s)	280, 358, 433, 529, 640
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PscI	ACATGT	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	574
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	402, 612
PspPI	GGNCC	3 cut(s)	219, 232, 424
PstI	CTGCAG	1 cut(s)	540
PstNI	CAGNNNCTG	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	843
SalI	GTCGAC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	773, 934
Sau3AI	GATC	2 cut(s)	394, 835
Sau96I	GGNCC	3 cut(s)	219, 232, 424
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	4 cut(s)	210, 226, 269, 576
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	2 cut(s)	391, 720
SfcI	CTRYAG	1 cut(s)	536
SfuI	TTCGAA	2 cut(s)	9, 78
SgrAI	CRCCGGYG	1 cut(s)	616
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	843
Sse9I	AATT	4 cut(s)	284, 292, 737, 796
SspMI	CTAG	2 cut(s)	38, 257
StyD4I	CCNGG	4 cut(s)	208, 224, 267, 574
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	3 cut(s)	163, 184, 391
TaiI	ACGT	2 cut(s)	60, 594
TaqI	TCGA	6 cut(s)	9, 78, 375, 431, 487, 549
TasI	AATT	4 cut(s)	284, 292, 737, 796
TfiI	GAWTC	5 cut(s)	280, 358, 433, 529, 640
Tru1I	TTAA	2 cut(s)	773, 934
Tru9I	TTAA	2 cut(s)	773, 934
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	3 cut(s)	535, 693, 896
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	424
XceI	RCATGY	1 cut(s)	928
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	2 cut(s)	38, 257
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.