Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010820

Physical Location & Seq

Genomic Coordinates Forward (+)

62892922 .. 62894378

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G038780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGATTTCGAAGATGAACAATACCTGAAGCAAAGACTAGACGAATTGCAGAGAGACGTCTCCAAGAAGCAAAAGTTCGAACCCGCCGTCGCCGCCCTCGTCTCTCTCCTCCGCGACCGCTACTCCTCCGCCTCCCCACCGCTTCGCAAGTCCTACTACACCGTCATCTCCCGCGTCGCCACCGTCTTAAAGACCCGCTACACCTCCCCCGGTTTCTGGGCCGCCGGGTTGGCCCTCTTCCGCCTCGCCCTAACCCTAGTTTCCGACCCGGCTGAGAAGAATCAATTACTCAATTACATTTCCGAGGCCGAGAAGGTCGTTCGTCAAGAAGACGAGCCTCCCAATCTCTCGCCGCCGAATCAAGGGTTTCTTTTCGAGGGGCATCTGACGGTGGATCGGGAGCCGCCGCAACCGCAGTGGCTGGTCCAGTCGAATTTCATGGCCTCCGCCGAGTCTTCACGTTCGGGTCGACCCGAACCCGAGACCGGCGACAACAACGACGACTCCGAGAGCGCGGCGAATCTGCTGCAGTCGCTAATCGACAACCTTGACAGCGTTTTGCCGCCGAGGGTGCCGCCGGCGAGTAAGAAAGTGGTGGCGAATCTTCCGGTGATTACGATTACGGAGGAGAATCTGAAGAGTCTGGAAGCAGACTGCTGCATTTGTAAAGAGATTTTGGTTGTGAATGACAAGATGCAGGAGTTGCCTTGCAAGCACACTTTTCACCCACCATGTTTAAAACCTTGGCTGGATGAGCACAATTCGTGTCCAATATGCCGGCATGAGTTGGAGACTGATGATCATGCATATGAGAGCTGGAAGGAGAGGGAGAGGGAGGCTGAAGAAGACAGAAAAGGCGCTGCCAATGCGGTTCGGGGTGGTGAATACATGTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

299

Amino Acids

33.85

Weight (kDa)

5.0

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	218 - 260	8.1e-12	Ring finger domain
zf-RING_11	PF17123	218 - 246	6.7e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	219 - 259	8.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20910
fragaria_vesca	FvH4_2g37060
malus_domestica	MD08G1042800.v1.1 MD08G1045000.v1.1 MD08G1045700.v1.1 MD15G1046800.v1.1
prunus_persica	Prupe.1G401200_v2.0.a1 Prupe.1G401200_v2.0.a1
pyrus_communis	pycom15g04480
rosa_chinensis	RchiOBHm_Chr6g0304721
rosa_laevigata	RLG00000010956
rosa_multiflora	Rmu_co8160404.1_g000001 Rmu_sc0027256.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163560
rosa_rugosa	Rorug06G0333800
rosa_samantha	Rh6AG445800 Rh6BG455900 Rh6CG458900 Rh6DG445900
rosa_wichuraiana	Rw6G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	469
AccII	CGCG	3 cut(s)	114, 174, 515
AclWI	GGATC	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	3 cut(s)	47, 656, 861
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	3 cut(s)	216, 362, 485
AflIII	ACRYGT	1 cut(s)	888
AluBI	AGCT	1 cut(s)	816
AluI	AGCT	1 cut(s)	816
Alw21I	GWGCWC	1 cut(s)	759
Alw26I	GTCTC	5 cut(s)	48, 64, 106, 476, 785
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	479
AoxI	GGCC	4 cut(s)	219, 231, 306, 441
ApeKI	GCWGC	3 cut(s)	526, 657, 860
ApoI	RAATTY	1 cut(s)	433
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspLEI	GCGC	2 cut(s)	515, 860
AspS9I	GGNCC	3 cut(s)	219, 232, 424
AsuC2I	CCSGG	3 cut(s)	210, 226, 269
AsuHPI	GGTGA	3 cut(s)	622, 716, 893
AsuII	TTCGAA	2 cut(s)	9, 78
AvaI	CYCGRG	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	571
BbsI	GAAGAC	3 cut(s)	336, 447, 852
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	3 cut(s)	513, 644, 847
BceAI	ACGGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	508, 542
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	3 cut(s)	210, 226, 269
BcoDI	GTCTC	5 cut(s)	48, 64, 106, 476, 785
BfaI	CTAG	2 cut(s)	38, 257
BfmI	CTRYAG	1 cut(s)	527
BfoI	RGCGCY	1 cut(s)	861
BglI	GCCNNNNNGGC	1 cut(s)	230
Bme1390I	CCNGG	3 cut(s)	210, 226, 269
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	3 cut(s)	219, 232, 424
BmiI	GGNNCC	2 cut(s)	402, 573
BmrFI	CCNGG	3 cut(s)	210, 226, 269
BmsI	GCATC	2 cut(s)	391, 684
BpiI	GAAGAC	3 cut(s)	336, 447, 852
Bpu14I	TTCGAA	2 cut(s)	9, 78
BpuMI	CCSGG	3 cut(s)	210, 226, 269
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	4 cut(s)	208, 303, 566, 743
BsaWI	WCCGGW	1 cut(s)	607
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 488, 518
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 362, 485
Bse118I	RCCGGY	3 cut(s)	485, 577, 777
Bse1I	ACTGG	1 cut(s)	427
BseDI	CCNNGG	4 cut(s)	208, 303, 566, 743
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	3 cut(s)	216, 362, 485
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	3 cut(s)	98, 115, 641
BseXI	GCAGC	3 cut(s)	513, 644, 847
Bsh1236I	CGCG	3 cut(s)	114, 174, 515
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	4 cut(s)	221, 233, 308, 443
BshNI	GGYRCC	1 cut(s)	571
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	759
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	7 cut(s)	210, 225, 269, 486, 578, 608, 778
BslI	CCNNNNNNNGG	3 cut(s)	216, 362, 485
BsmAI	GTCTC	5 cut(s)	48, 64, 106, 476, 785
BsmBI	CGTCTC	3 cut(s)	48, 64, 106
BsnI	GGCC	4 cut(s)	221, 233, 308, 443
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	479
Bsp119I	TTCGAA	2 cut(s)	9, 78
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp143I	GATC	2 cut(s)	394, 799
BspANI	GGCC	4 cut(s)	221, 233, 308, 443
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	3 cut(s)	114, 174, 515
BspLI	GGNNCC	2 cut(s)	402, 573
BspMAI	CTGCAG	1 cut(s)	531
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	2 cut(s)	9, 78
BspT107I	GGYRCC	1 cut(s)	571
BspTNI	GGTCTC	1 cut(s)	476
BsrFI	RCCGGY	3 cut(s)	485, 577, 777
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	3 cut(s)	485, 577, 777
BssECI	CCNNGG	4 cut(s)	208, 303, 566, 743
BssMI	GATC	2 cut(s)	394, 799
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	743
Bst4CI	ACNGT	3 cut(s)	163, 184, 391
Bst6I	CTCTTC	2 cut(s)	242, 632
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstBI	TTCGAA	2 cut(s)	9, 78
BstC8I	GCNNGC	3 cut(s)	579, 713, 779
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	757
BstFNI	CGCG	3 cut(s)	114, 174, 515
BstH2I	RGCGCY	1 cut(s)	861
BstHHI	GCGC	2 cut(s)	515, 860
BstKTI	GATC	2 cut(s)	397, 802
BstMAI	GTCTC	5 cut(s)	48, 64, 106, 476, 785
BstMBI	GATC	2 cut(s)	394, 799
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 230, 412, 532, 571, 703, 712, 754, 866
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	3 cut(s)	208, 224, 267
BstSFI	CTRYAG	1 cut(s)	527
BstUI	CGCG	3 cut(s)	114, 174, 515
BstV1I	GCAGC	3 cut(s)	513, 644, 847
BstV2I	GAAGAC	3 cut(s)	336, 447, 852
BsuRI	GGCC	4 cut(s)	221, 233, 308, 443
BtsCI	GGATG	1 cut(s)	757
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	3 cut(s)	579, 713, 779
CaiI	CAGNNNCTG	1 cut(s)	421
CfoI	GCGC	2 cut(s)	515, 860
Cfr10I	RCCGGY	3 cut(s)	485, 577, 777
Cfr13I	GGNCC	3 cut(s)	219, 232, 424
CseI	GACGC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	5 cut(s)	439, 732, 782, 803, 889
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	396, 801
DpnII	GATC	2 cut(s)	394, 799
DraI	TTTAAA	1 cut(s)	738
Eam1104I	CTCTTC	2 cut(s)	242, 632
EarI	CTCTTC	2 cut(s)	242, 632
EciI	GGCGGA	3 cut(s)	118, 230, 436
Eco130I	CCWWGG	1 cut(s)	743
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	3 cut(s)	47, 656, 861
Eco88I	CYCGRG	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	743
EcoT22I	ATGCAT	1 cut(s)	808
ErhI	CCWWGG	1 cut(s)	743
Esp3I	CGTCTC	3 cut(s)	48, 64, 106
FaeI	CATG	5 cut(s)	442, 735, 785, 806, 892
FaiI	YATR	9 cut(s)	440, 733, 775, 783, 804, 808, 810, 890, 894
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	5 cut(s)	438, 731, 781, 802, 888
FauI	CCCGC	3 cut(s)	91, 179, 203
FauNDI	CATATG	1 cut(s)	808
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	469
FokI	GGATG	1 cut(s)	764
FspBI	CTAG	2 cut(s)	38, 257
GlaI	GCGC	2 cut(s)	514, 859
HaeII	RGCGCY	1 cut(s)	861
HaeIII	GGCC	4 cut(s)	221, 233, 308, 443
HapII	CCGG	7 cut(s)	210, 225, 269, 486, 578, 608, 778
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	515, 860
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	442, 735, 785, 806, 892
Hin6I	GCGC	2 cut(s)	513, 858
HinP1I	GCGC	2 cut(s)	513, 858
HincII	GTYRAC	1 cut(s)	470
HindII	GTYRAC	1 cut(s)	470
HinfI	GANTC	8 cut(s)	280, 358, 452, 503, 520, 601, 631, 640
HpaII	CCGG	7 cut(s)	210, 225, 269, 486, 578, 608, 778
HphI	GGTGA	3 cut(s)	622, 716, 893
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	5 cut(s)	265, 304, 387, 508, 636
Hpy188III	TCNNGA	3 cut(s)	326, 398, 644
Hpy8I	GTNNAC	1 cut(s)	470
Hpy99I	CGWCG	3 cut(s)	92, 179, 503
HpyAV	CCTTC	2 cut(s)	307, 814
HpyCH4III	ACNGT	3 cut(s)	163, 184, 391
HpyCH4IV	ACGT	2 cut(s)	57, 460
HpyCH4V	TGCA	6 cut(s)	49, 529, 660, 697, 711, 806
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 230, 412, 532, 571, 703, 712, 754, 866
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	57, 460
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	442, 735, 785, 806, 892
HspAI	GCGC	2 cut(s)	513, 858
KroI	GCCGGC	2 cut(s)	577, 777
KroNI	GCCGGC	2 cut(s)	579, 779
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	2 cut(s)	394, 799
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	3 cut(s)	513, 644, 847
LweI	GCATC	2 cut(s)	391, 684
MaeI	CTAG	2 cut(s)	38, 257
MaeII	ACGT	2 cut(s)	57, 460
MalI	GATC	2 cut(s)	396, 801
MboI	GATC	2 cut(s)	394, 799
MboII	GAAGA	9 cut(s)	23, 229, 289, 341, 447, 596, 649, 854, 857
MhlI	GDGCHC	1 cut(s)	759
MluCI	AATT	5 cut(s)	44, 284, 292, 433, 760
MlyI	GAGTC	3 cut(s)	461, 497, 649
MmeI	TCCRAC	2 cut(s)	288, 768
Mph1103I	ATGCAT	1 cut(s)	808
MreI	CGCCGGCG	1 cut(s)	577
MroNI	GCCGGC	2 cut(s)	577, 777
MseI	TTAA	3 cut(s)	188, 737, 898
MslI	CAYNNNNRTG	1 cut(s)	807
MspI	CCGG	7 cut(s)	210, 225, 269, 486, 578, 608, 778
MspR9I	CCNGG	3 cut(s)	210, 226, 269
MvnI	CGCG	3 cut(s)	114, 174, 515
MwoI	GCNNNNNNNGC	9 cut(s)	92, 230, 412, 532, 571, 703, 712, 754, 866
NaeI	GCCGGC	2 cut(s)	579, 779
NciI	CCSGG	3 cut(s)	210, 226, 269
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	2 cut(s)	394, 799
NgoMIV	GCCGGC	2 cut(s)	577, 777
NlaIII	CATG	5 cut(s)	442, 735, 785, 806, 892
NlaIV	GGNNCC	2 cut(s)	402, 573
NmeAIII	GCCGAG	3 cut(s)	334, 475, 591
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	1 cut(s)	892
NspV	TTCGAA	2 cut(s)	9, 78
PciI	ACATGT	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	4 cut(s)	84, 96, 466, 504
PdiI	GCCGGC	2 cut(s)	579, 779
PfeI	GAWTC	5 cut(s)	280, 358, 520, 601, 631
PleI	GAGTC	3 cut(s)	460, 497, 648
PpsI	GAGTC	3 cut(s)	460, 497, 648
PscI	ACATGT	1 cut(s)	888
PspN4I	GGNNCC	2 cut(s)	402, 573
PspPI	GGNCC	3 cut(s)	219, 232, 424
PstI	CTGCAG	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	807
SalI	GTCGAC	1 cut(s)	468
SaqAI	TTAA	3 cut(s)	188, 737, 898
Sau3AI	GATC	2 cut(s)	394, 799
Sau96I	GGNCC	3 cut(s)	219, 232, 424
SchI	GAGTC	3 cut(s)	461, 497, 649
ScrFI	CCNGG	3 cut(s)	210, 226, 269
SduI	GDGCHC	1 cut(s)	759
SetI	ASST	8 cut(s)	27, 60, 206, 318, 463, 549, 745, 818
SfaNI	GCATC	2 cut(s)	391, 684
SfcI	CTRYAG	1 cut(s)	527
SfuI	TTCGAA	2 cut(s)	9, 78
SgrAI	CRCCGGYG	1 cut(s)	577
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	807
Sse9I	AATT	5 cut(s)	44, 284, 292, 433, 760
SspMI	CTAG	2 cut(s)	38, 257
StyD4I	CCNGG	3 cut(s)	208, 224, 267
StyI	CCWWGG	1 cut(s)	743
TaaI	ACNGT	3 cut(s)	163, 184, 391
TaiI	ACGT	2 cut(s)	60, 463
TaqI	TCGA	6 cut(s)	9, 78, 375, 431, 469, 540
TasI	AATT	5 cut(s)	44, 284, 292, 433, 760
TauI	GCSGC	8 cut(s)	95, 224, 355, 406, 409, 518, 565, 577
TfiI	GAWTC	5 cut(s)	280, 358, 520, 601, 631
Tru1I	TTAA	3 cut(s)	188, 737, 898
Tru9I	TTAA	3 cut(s)	188, 737, 898
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	3 cut(s)	526, 657, 860
TspDTI	ATGAA	2 cut(s)	30, 427
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	892
XmiI	GTMKAC	1 cut(s)	469
XspI	CTAG	2 cut(s)	38, 257
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.