Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8160404.1

Orthogroup ID

OG0010820

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 588

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8160404.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggatttcgaagatgaacaatacctgaagcaaagactagacgaattgcagagagacgtctccaagaagcaaaagttcgaacccgccgtcgccgccctcgtctctctcctccgcgaccgctactcctccgcctccccgccgcttcgcaagtcctactacaccgtcatctcccgcgtcgccaccgtcttgaagacccgctacacctcccccggtttctgggccgccgggttggccctcttccgcctcgccctaaccctagtttccgacccggccgagaagaatcaattactcaattacatttccgacgccgagaaggtcgttcgtcaagaagacgagcctcccaatctctcgccgccgaatcaagggtttcttttcgaggggcatctgacggtggatcgggagccgctggtccagtcgaatttcatggcctccgccgccactctcttcgccgccgagtcttcacgttcgggtcgacccgaacccgagaccggcgacaacaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

167

Amino Acids

18.74

Weight (kDa)

5.29

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20910
fragaria_vesca	FvH4_2g37060
malus_domestica	MD08G1042800.v1.1 MD08G1045000.v1.1 MD08G1045700.v1.1 MD15G1046800.v1.1
prunus_persica	Prupe.1G401200_v2.0.a1 Prupe.1G401200_v2.0.a1
pyrus_communis	pycom15g04480
rosa_chinensis	RchiOBHm_Chr6g0304721
rosa_laevigata	RLG00000010956
rosa_multiflora	Rmu_co8160404.1_g000001 Rmu_sc0027256.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163560
rosa_rugosa	Rorug06G0333800
rosa_samantha	Rh6AG445800 Rh6BG455900 Rh6CG458900 Rh6DG445900
rosa_wichuraiana	Rw6G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	472
AccII	CGCG	2 cut(s)	114, 174
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	2 cut(s)	57, 306
AfiI	CCNNNNNNNGG	3 cut(s)	216, 362, 488
AgsI	TTSAA	1 cut(s)	190
Alw26I	GTCTC	4 cut(s)	48, 64, 106, 479
AlwI	GGATC	1 cut(s)	402
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	4 cut(s)	219, 231, 270, 426
ApoI	RAATTY	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspS9I	GGNCC	3 cut(s)	219, 232, 409
AsuC2I	CCSGG	3 cut(s)	210, 226, 269
AsuII	TTCGAA	2 cut(s)	9, 78
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	409
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbsI	GAAGAC	3 cut(s)	197, 336, 450
BceAI	ACGGC	1 cut(s)	71
BcnI	CCSGG	3 cut(s)	210, 226, 269
BcoDI	GTCTC	4 cut(s)	48, 64, 106, 479
BfaI	CTAG	2 cut(s)	38, 257
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	7 cut(s)	93, 140, 222, 353, 404, 435, 450
BlsI	GCNGC	7 cut(s)	94, 141, 223, 354, 405, 436, 451
Bme1390I	CCNGG	3 cut(s)	210, 226, 269
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	3 cut(s)	219, 232, 409
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	3 cut(s)	210, 226, 269
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	3 cut(s)	197, 336, 450
Bpu14I	TTCGAA	2 cut(s)	9, 78
BpuMI	CCSGG	3 cut(s)	210, 226, 269
BsaHI	GRCGYC	2 cut(s)	57, 306
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 362, 488
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	3 cut(s)	216, 362, 488
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	2 cut(s)	98, 115
BseX3I	CGGCCG	1 cut(s)	270
Bsh1236I	CGCG	2 cut(s)	114, 174
Bsh1285I	CGRYCG	2 cut(s)	118, 273
BshFI	GGCC	4 cut(s)	221, 233, 272, 428
BsiEI	CGRYCG	2 cut(s)	118, 273
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	4 cut(s)	210, 225, 269, 489
BslI	CCNNNNNNNGG	3 cut(s)	216, 362, 488
BsmAI	GTCTC	4 cut(s)	48, 64, 106, 479
BsmBI	CGTCTC	3 cut(s)	48, 64, 106
BsnI	GGCC	4 cut(s)	221, 233, 272, 428
Bso31I	GGTCTC	1 cut(s)	479
BsoBI	CYCGRG	1 cut(s)	482
Bsp119I	TTCGAA	2 cut(s)	9, 78
Bsp143I	GATC	1 cut(s)	394
BspANI	GGCC	4 cut(s)	221, 233, 272, 428
BspFNI	CGCG	2 cut(s)	114, 174
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	2 cut(s)	9, 78
BspTNI	GGTCTC	1 cut(s)	479
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	394
BssNI	GRCGYC	2 cut(s)	57, 306
Bst4CI	ACNGT	3 cut(s)	163, 184, 391
Bst6I	CTCTTC	2 cut(s)	242, 449
BstACI	GRCGYC	2 cut(s)	57, 306
BstBI	TTCGAA	2 cut(s)	9, 78
BstFNI	CGCG	2 cut(s)	114, 174
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	4 cut(s)	48, 64, 106, 479
BstMBI	GATC	1 cut(s)	394
BstMCI	CGRYCG	2 cut(s)	118, 273
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 230, 434
BstSCI	CCNGG	3 cut(s)	208, 224, 267
BstUI	CGCG	2 cut(s)	114, 174
BstV2I	GAAGAC	3 cut(s)	197, 336, 450
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	4 cut(s)	221, 233, 272, 428
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	219, 232, 409
CseI	GACGC	2 cut(s)	163, 314
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	6 cut(s)	221, 233, 272, 337, 403, 428
CviKI_1	RGCY	6 cut(s)	221, 233, 272, 337, 403, 428
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	242, 449
EarI	CTCTTC	2 cut(s)	242, 449
EciI	GGCGGA	3 cut(s)	118, 230, 421
EclXI	CGGCCG	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	409
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	482
Esp3I	CGTCTC	3 cut(s)	48, 64, 106
FaeI	CATG	1 cut(s)	427
FaiI	YATR	1 cut(s)	425
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	1 cut(s)	423
FauI	CCCGC	4 cut(s)	91, 144, 179, 203
FblI	GTMKAC	1 cut(s)	472
Fnu4HI	GCNGC	7 cut(s)	93, 140, 222, 353, 404, 435, 450
Fsp4HI	GCNGC	7 cut(s)	93, 140, 222, 353, 404, 435, 450
FspBI	CTAG	2 cut(s)	38, 257
GluI	GCNGC	7 cut(s)	93, 140, 222, 353, 404, 435, 450
HaeIII	GGCC	4 cut(s)	221, 233, 272, 428
HapII	CCGG	4 cut(s)	210, 225, 269, 489
HgaI	GACGC	2 cut(s)	163, 314
Hin1I	GRCGYC	2 cut(s)	57, 306
Hin1II	CATG	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	473
HindII	GTYRAC	1 cut(s)	473
HinfI	GANTC	3 cut(s)	280, 358, 455
HpaII	CCGG	4 cut(s)	210, 225, 269, 489
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	3 cut(s)	265, 304, 387
Hpy188III	TCNNGA	3 cut(s)	187, 326, 398
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	3 cut(s)	92, 179, 308
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	3 cut(s)	163, 184, 391
HpyCH4IV	ACGT	2 cut(s)	57, 463
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 230, 434
HpySE526I	ACGT	2 cut(s)	57, 463
Hsp92I	GRCGYC	2 cut(s)	57, 306
Hsp92II	CATG	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	7 cut(s)	38, 202, 223, 238, 282, 392, 425
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	38, 257
MaeII	ACGT	2 cut(s)	57, 463
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	7 cut(s)	23, 202, 229, 289, 341, 436, 450
MluCI	AATT	4 cut(s)	44, 284, 292, 418
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	288, 327
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	4 cut(s)	210, 225, 269, 489
MspR9I	CCNGG	3 cut(s)	210, 226, 269
MvnI	CGCG	2 cut(s)	114, 174
MwoI	GCNNNNNNNGC	3 cut(s)	92, 230, 434
NciI	CCSGG	3 cut(s)	210, 226, 269
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	1 cut(s)	402
NmeAIII	GCCGAG	3 cut(s)	298, 334, 478
NspV	TTCGAA	2 cut(s)	9, 78
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 96, 469
PfeI	GAWTC	2 cut(s)	280, 358
PkrI	GCNGC	7 cut(s)	94, 141, 223, 354, 405, 436, 451
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	3 cut(s)	219, 232, 409
SalI	GTCGAC	1 cut(s)	471
SatI	GCNGC	7 cut(s)	93, 140, 222, 353, 404, 435, 450
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	3 cut(s)	219, 232, 409
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	3 cut(s)	210, 226, 269
SetI	ASST	5 cut(s)	27, 60, 206, 318, 466
SfaNI	GCATC	1 cut(s)	391
SfuI	TTCGAA	2 cut(s)	9, 78
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	4 cut(s)	44, 284, 292, 418
SspMI	CTAG	2 cut(s)	38, 257
StyD4I	CCNGG	3 cut(s)	208, 224, 267
TaaI	ACNGT	3 cut(s)	163, 184, 391
TaiI	ACGT	2 cut(s)	60, 466
TaqI	TCGA	5 cut(s)	9, 78, 375, 416, 472
TasI	AATT	4 cut(s)	44, 284, 292, 418
TauI	GCSGC	7 cut(s)	95, 142, 224, 355, 406, 437, 452
TfiI	GAWTC	2 cut(s)	280, 358
TspDTI	ATGAA	2 cut(s)	30, 412
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	472
XspI	CTAG	2 cut(s)	38, 257
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.