Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010820

Physical Location & Seq

Genomic Coordinates Reverse (-)

5662614 .. 5663762

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010956

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGATTTCGAAGATGAACAATACCTGAAGCAAAGACTAGACGAATTGCAGAGAGACGTCTCCAAGAAGCAGAAGTTCGAACCCGCCGTCGCCGCCCTCGTCTCTCTCCTCCGCGACCGCTACTCCTCCGCCTCCCCGCCGCTTCGCAAGTCCTACTACACCGTCATCTCCCGCGTCGCCACCGTCTTGAAGACCCGCTACACCTCCCCCGGTTTCTGGGCCGCCGGGTTGGCCCTCTTCCGCCTCGCCCTAACCCTAGTTTCCGACCCGGCCGAGAAGAATCAATTACTCAATTACATTTCCGAAGCCGAGAAGGTCGTTCGTCAAGAAGACGAGCCTCCCAATCTCTCGCCGCCGAATCAAGGGTTTCTTTTCGAGGGGCATCTGACGGTGGATCGGGAGCCGCCGCAACCGCAGTGGCTGGTCCAGTCGAATCTCATGGCCTCCGCCGCCACTCTCTTCGCCGCCGAGTCTTCGCGTTCGGGTCGACCCGAACCCGAGACCGGCGACAACAACGACGACTCCGAAAGCGCGGCGAATCTGCTGCAGTCGCTAATCGATAACCTTGACAGCGTTTTGCCGCCGGGGATTTTGGACGACGTGAGAGGAGCGCCGAGGGTGCCGCCGGCGAGTAAGAAAGTGGTGGCGAATCTTCCGGTGATTACGATTACGGAGGAGAAGCTGAAGAAGCTGGGAGAGGAAGCAGACTGCTGCATTTGTAAAGAGATTTTGGTTGTGAATGACACGATGCAGGAATTGCCTTGCAAGCACACTTTTCACCCACCATGTTTAAAACCTTGGCTGGATGAGCACAATTCATGTCCCATATGCCGGCATGAGTTGGAGACTGATGATCATGCATATGAGAGCTGGAAGGAGAGGGAGAGGGAGGCTGAAGAAGACAGAAAAGGCGCTGCCAATGCGGTTCGGGGTGGTGAATACATGTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

318

Amino Acids

35.6

Weight (kDa)

4.97

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	236 - 278	1.4e-11	Ring finger domain
zf-RING_11	PF17123	236 - 264	6.4e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	237 - 277	2.4e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20910
fragaria_vesca	FvH4_2g37060
malus_domestica	MD08G1042800.v1.1 MD08G1045000.v1.1 MD08G1045700.v1.1 MD15G1046800.v1.1
prunus_persica	Prupe.1G401200_v2.0.a1 Prupe.1G401200_v2.0.a1
pyrus_communis	pycom15g04480
rosa_chinensis	RchiOBHm_Chr6g0304721
rosa_laevigata	RLG00000010956
rosa_multiflora	Rmu_co8160404.1_g000001 Rmu_sc0027256.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163560
rosa_rugosa	Rorug06G0333800
rosa_samantha	Rh6AG445800 Rh6BG455900 Rh6CG458900 Rh6DG445900
rosa_wichuraiana	Rw6G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	487
AccII	CGCG	4 cut(s)	114, 174, 478, 533
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	3 cut(s)	47, 704, 915
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	4 cut(s)	216, 362, 503, 831
AflIII	ACRYGT	1 cut(s)	942
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	601
AluBI	AGCT	3 cut(s)	682, 691, 870
AluI	AGCT	3 cut(s)	682, 691, 870
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	5 cut(s)	48, 64, 106, 494, 839
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	4 cut(s)	219, 231, 270, 441
ApeKI	GCWGC	3 cut(s)	544, 711, 914
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspLEI	GCGC	3 cut(s)	533, 613, 914
AspS9I	GGNCC	3 cut(s)	219, 232, 424
AsuC2I	CCSGG	4 cut(s)	210, 226, 269, 585
AsuHPI	GGTGA	3 cut(s)	670, 770, 947
AsuII	TTCGAA	2 cut(s)	9, 78
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	619
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbsI	GAAGAC	4 cut(s)	197, 336, 465, 906
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	3 cut(s)	531, 698, 901
BceAI	ACGGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	526, 560
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	4 cut(s)	210, 226, 269, 585
BcoDI	GTCTC	5 cut(s)	48, 64, 106, 494, 839
BfaI	CTAG	2 cut(s)	38, 257
BfmI	CTRYAG	1 cut(s)	545
BfoI	RGCGCY	2 cut(s)	614, 915
BglI	GCCNNNNNGGC	1 cut(s)	230
Bme1390I	CCNGG	4 cut(s)	210, 226, 269, 585
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	219, 232, 424
BmiI	GGNNCC	2 cut(s)	402, 621
BmrFI	CCNGG	4 cut(s)	210, 226, 269, 585
BmsI	GCATC	2 cut(s)	391, 738
BpiI	GAAGAC	4 cut(s)	197, 336, 465, 906
Bpu14I	TTCGAA	2 cut(s)	9, 78
BpuMI	CCSGG	4 cut(s)	210, 226, 269, 585
Bsa29I	ATCGAT	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	4 cut(s)	208, 584, 614, 797
BsaWI	WCCGGW	1 cut(s)	655
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 506, 536
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 362, 503, 831
Bse118I	RCCGGY	3 cut(s)	503, 625, 831
Bse1I	ACTGG	1 cut(s)	427
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	4 cut(s)	208, 584, 614, 797
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	4 cut(s)	216, 362, 503, 831
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	4 cut(s)	98, 115, 621, 689
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	3 cut(s)	531, 698, 901
BseYI	CCCAGC	1 cut(s)	691
Bsh1236I	CGCG	4 cut(s)	114, 174, 478, 533
Bsh1285I	CGRYCG	2 cut(s)	118, 273
BshFI	GGCC	4 cut(s)	221, 233, 272, 443
BshNI	GGYRCC	1 cut(s)	619
BshVI	ATCGAT	1 cut(s)	558
BsiEI	CGRYCG	2 cut(s)	118, 273
BsiHKAI	GWGCWC	1 cut(s)	813
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	8 cut(s)	210, 225, 269, 504, 584, 626, 656, 832
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	4 cut(s)	216, 362, 503, 831
BsmAI	GTCTC	5 cut(s)	48, 64, 106, 494, 839
BsmBI	CGTCTC	3 cut(s)	48, 64, 106
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	4 cut(s)	221, 233, 272, 443
Bso31I	GGTCTC	1 cut(s)	494
BsoBI	CYCGRG	1 cut(s)	497
Bsp119I	TTCGAA	2 cut(s)	9, 78
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp143I	GATC	2 cut(s)	394, 853
BspANI	GGCC	4 cut(s)	221, 233, 272, 443
BspDI	ATCGAT	1 cut(s)	558
BspFNI	CGCG	4 cut(s)	114, 174, 478, 533
BspLI	GGNNCC	2 cut(s)	402, 621
BspMAI	CTGCAG	1 cut(s)	549
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	2 cut(s)	9, 78
BspT107I	GGYRCC	1 cut(s)	619
BspTNI	GGTCTC	1 cut(s)	494
BsrFI	RCCGGY	3 cut(s)	503, 625, 831
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	3 cut(s)	503, 625, 831
BssECI	CCNNGG	4 cut(s)	208, 584, 614, 797
BssMI	GATC	2 cut(s)	394, 853
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	797
Bst4CI	ACNGT	3 cut(s)	163, 184, 391
Bst6I	CTCTTC	2 cut(s)	242, 464
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	757
BstBI	TTCGAA	2 cut(s)	9, 78
BstC8I	GCNNGC	3 cut(s)	627, 767, 833
BstF5I	GGATG	1 cut(s)	811
BstFNI	CGCG	4 cut(s)	114, 174, 478, 533
BstH2I	RGCGCY	2 cut(s)	614, 915
BstHHI	GCGC	3 cut(s)	533, 613, 914
BstKTI	GATC	2 cut(s)	397, 856
BstMAI	GTCTC	5 cut(s)	48, 64, 106, 494, 839
BstMBI	GATC	2 cut(s)	394, 853
BstMCI	CGRYCG	2 cut(s)	118, 273
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	4 cut(s)	208, 224, 267, 583
BstSFI	CTRYAG	1 cut(s)	545
BstUI	CGCG	4 cut(s)	114, 174, 478, 533
BstV1I	GCAGC	3 cut(s)	531, 698, 901
BstV2I	GAAGAC	4 cut(s)	197, 336, 465, 906
BstZI	CGGCCG	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	558
BsuRI	GGCC	4 cut(s)	221, 233, 272, 443
BsuTUI	ATCGAT	1 cut(s)	558
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	811
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	3 cut(s)	627, 767, 833
CaiI	CAGNNNCTG	1 cut(s)	421
CfoI	GCGC	3 cut(s)	533, 613, 914
Cfr10I	RCCGGY	3 cut(s)	503, 625, 831
Cfr13I	GGNCC	3 cut(s)	219, 232, 424
ClaI	ATCGAT	1 cut(s)	558
CseI	GACGC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	6 cut(s)	439, 786, 819, 836, 857, 943
DpnI	GATC	2 cut(s)	396, 855
DpnII	GATC	2 cut(s)	394, 853
DraI	TTTAAA	1 cut(s)	792
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	242, 464
EarI	CTCTTC	2 cut(s)	242, 464
EciI	GGCGGA	3 cut(s)	118, 230, 436
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	797
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	424
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	3 cut(s)	47, 704, 915
Eco88I	CYCGRG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	797
EcoT22I	ATGCAT	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	797
Esp3I	CGTCTC	3 cut(s)	48, 64, 106
FaeI	CATG	6 cut(s)	442, 789, 822, 839, 860, 946
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	6 cut(s)	438, 785, 818, 835, 856, 942
FauI	CCCGC	4 cut(s)	91, 144, 179, 203
FauNDI	CATATG	2 cut(s)	827, 862
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	487
FokI	GGATG	1 cut(s)	818
FspBI	CTAG	2 cut(s)	38, 257
GlaI	GCGC	3 cut(s)	532, 612, 913
GsaI	CCCAGC	1 cut(s)	695
HaeII	RGCGCY	2 cut(s)	614, 915
HaeIII	GGCC	4 cut(s)	221, 233, 272, 443
HapII	CCGG	8 cut(s)	210, 225, 269, 504, 584, 626, 656, 832
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	3 cut(s)	533, 613, 914
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	6 cut(s)	442, 789, 822, 839, 860, 946
Hin6I	GCGC	3 cut(s)	531, 611, 912
HinP1I	GCGC	3 cut(s)	531, 611, 912
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	7 cut(s)	280, 358, 433, 470, 521, 538, 649
HpaII	CCGG	8 cut(s)	210, 225, 269, 504, 584, 626, 656, 832
HphI	GGTGA	3 cut(s)	670, 770, 947
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	4 cut(s)	265, 304, 387, 526
Hpy188III	TCNNGA	3 cut(s)	187, 326, 398
Hpy8I	GTNNAC	1 cut(s)	488
Hpy99I	CGWCG	4 cut(s)	92, 179, 521, 602
HpyAV	CCTTC	2 cut(s)	307, 868
HpyCH4III	ACNGT	3 cut(s)	163, 184, 391
HpyCH4IV	ACGT	2 cut(s)	57, 600
HpyCH4V	TGCA	6 cut(s)	49, 547, 714, 751, 765, 860
HpySE526I	ACGT	2 cut(s)	57, 600
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	6 cut(s)	442, 789, 822, 839, 860, 946
HspAI	GCGC	3 cut(s)	531, 611, 912
KroI	GCCGGC	2 cut(s)	625, 831
KroNI	GCCGGC	2 cut(s)	627, 833
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	2 cut(s)	394, 853
LmnI	GCTCC	2 cut(s)	400, 608
Lsp1109I	GCAGC	3 cut(s)	531, 698, 901
LweI	GCATC	2 cut(s)	391, 738
MaeI	CTAG	2 cut(s)	38, 257
MaeII	ACGT	2 cut(s)	57, 600
MalI	GATC	2 cut(s)	396, 855
MboI	GATC	2 cut(s)	394, 853
MhlI	GDGCHC	1 cut(s)	813
MluCI	AATT	5 cut(s)	44, 284, 292, 755, 814
MlyI	GAGTC	2 cut(s)	479, 515
MmeI	TCCRAC	2 cut(s)	288, 822
Mph1103I	ATGCAT	1 cut(s)	862
MreI	CGCCGGCG	1 cut(s)	625
MroNI	GCCGGC	2 cut(s)	625, 831
MseI	TTAA	2 cut(s)	791, 952
MslI	CAYNNNNRTG	1 cut(s)	861
MspI	CCGG	8 cut(s)	210, 225, 269, 504, 584, 626, 656, 832
MspR9I	CCNGG	4 cut(s)	210, 226, 269, 585
MvnI	CGCG	4 cut(s)	114, 174, 478, 533
NaeI	GCCGGC	2 cut(s)	627, 833
NciI	CCSGG	4 cut(s)	210, 226, 269, 585
NdeI	CATATG	2 cut(s)	827, 862
NdeII	GATC	2 cut(s)	394, 853
NgoMIV	GCCGGC	2 cut(s)	625, 831
NlaIII	CATG	6 cut(s)	442, 789, 822, 839, 860, 946
NlaIV	GGNNCC	2 cut(s)	402, 621
NmeAIII	GCCGAG	4 cut(s)	298, 334, 493, 639
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	1 cut(s)	946
NspV	TTCGAA	2 cut(s)	9, 78
PciI	ACATGT	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 96, 522
PdiI	GCCGGC	2 cut(s)	627, 833
PfeI	GAWTC	5 cut(s)	280, 358, 433, 538, 649
PleI	GAGTC	2 cut(s)	478, 515
PpsI	GAGTC	2 cut(s)	478, 515
PscI	ACATGT	1 cut(s)	942
PspFI	CCCAGC	1 cut(s)	691
PspN4I	GGNNCC	2 cut(s)	402, 621
PspPI	GGNCC	3 cut(s)	219, 232, 424
PstI	CTGCAG	1 cut(s)	549
PstNI	CAGNNNCTG	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	861
SalI	GTCGAC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	791, 952
Sau3AI	GATC	2 cut(s)	394, 853
Sau96I	GGNCC	3 cut(s)	219, 232, 424
SchI	GAGTC	2 cut(s)	479, 515
ScrFI	CCNGG	4 cut(s)	210, 226, 269, 585
SduI	GDGCHC	1 cut(s)	813
SfaNI	GCATC	2 cut(s)	391, 738
SfcI	CTRYAG	1 cut(s)	545
SfuI	TTCGAA	2 cut(s)	9, 78
SgrAI	CRCCGGYG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	861
Sse9I	AATT	5 cut(s)	44, 284, 292, 755, 814
SspMI	CTAG	2 cut(s)	38, 257
StyD4I	CCNGG	4 cut(s)	208, 224, 267, 583
StyI	CCWWGG	1 cut(s)	797
TaaI	ACNGT	3 cut(s)	163, 184, 391
TaiI	ACGT	2 cut(s)	60, 603
TaqI	TCGA	6 cut(s)	9, 78, 375, 431, 487, 558
TasI	AATT	5 cut(s)	44, 284, 292, 755, 814
TfiI	GAWTC	5 cut(s)	280, 358, 433, 538, 649
Tru1I	TTAA	2 cut(s)	791, 952
Tru9I	TTAA	2 cut(s)	791, 952
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	3 cut(s)	544, 711, 914
TspDTI	ATGAA	2 cut(s)	30, 807
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	424
XceI	RCATGY	1 cut(s)	946
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	2 cut(s)	38, 257
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.