Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010820

Physical Location & Seq

Genomic Coordinates Reverse (-)

3150543 .. 3150890

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1042800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGGCCATGGCGGTGGAGTCGTCTTCTGAGTCGGGTCCTGGAATCGAAGAGAACTCGGAAGGCGCAGTGAATCTGCTTCAGAGTCTCATTGACAACCTCGACAACGTTTTGCCGCTGGGGATTTTGGGTGACGTGAGGGCGGCTCCGAAGGTCCCGCCTGCAAGCAAACAGGTGAAGGCCAATCTTCCAGTGATCATGATCACGGAAGAAGTGTTGAAAAAGCTCGGAGATGACGCATATTGCTGCATTTGTGAGGAAAACTTGGTTGTCAATGACAAAATGCAGGAGTTGCCCTGCATGCACACTTTTCATCCTCCTTGCCTAAAGCCATGGCTGGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

116

Amino Acids

12.37

Weight (kDa)

4.54

Isoelectric Point (pI)

66.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	82 - 113	2.4e-08	Ring finger domain
zf-RING_11	PF17123	82 - 109	1.3e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20910
fragaria_vesca	FvH4_2g37060
malus_domestica	MD08G1042800.v1.1 MD08G1045000.v1.1 MD08G1045700.v1.1 MD15G1046800.v1.1
prunus_persica	Prupe.1G401200_v2.0.a1 Prupe.1G401200_v2.0.a1
pyrus_communis	pycom15g04480
rosa_chinensis	RchiOBHm_Chr6g0304721
rosa_laevigata	RLG00000010956
rosa_multiflora	Rmu_co8160404.1_g000001 Rmu_sc0027256.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163560
rosa_rugosa	Rorug06G0333800
rosa_samantha	Rh6AG445800 Rh6BG455900 Rh6CG458900 Rh6DG445900
rosa_wichuraiana	Rw6G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 14, 116, 143, 158
AclI	AACGTT	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	220
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	6, 180
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	38, 154
AsuHPI	GGTGA	2 cut(s)	143, 187
AvaII	GGWCC	2 cut(s)	38, 154
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	42
BclI	TGATCA	2 cut(s)	195, 201
BcoDI	GTCTC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	6, 116, 144, 247
BlsI	GCNGC	4 cut(s)	7, 117, 145, 248
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	2 cut(s)	38, 154
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	38, 154
BmiI	GGNNCC	3 cut(s)	39, 147, 156
BmrFI	CCNGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
BsaBI	GATNNNNATC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	9, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	9, 332
BseGI	GGATG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	2 cut(s)	118, 337
BshFI	GGCC	2 cut(s)	8, 182
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	8, 182
Bsp143I	GATC	2 cut(s)	195, 201
Bsp19I	CCATGG	2 cut(s)	9, 332
BspACI	CCGC	5 cut(s)	5, 14, 116, 143, 158
BspANI	GGCC	2 cut(s)	8, 182
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	39, 147, 156
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	9, 332
BssMI	GATC	2 cut(s)	195, 201
BssT1I	CCWWGG	2 cut(s)	9, 332
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstC8I	GCNNGC	3 cut(s)	162, 166, 302
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	2 cut(s)	9, 332
BstF5I	GGATG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	198, 204
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	195, 201
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 292, 301
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	8, 182
BtgI	CCRYGG	2 cut(s)	9, 332
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	75, 198
Cac8I	GCNNGC	3 cut(s)	162, 166, 302
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	38, 154
CseI	GACGC	1 cut(s)	245
CviAII	CATG	4 cut(s)	10, 199, 301, 333
CviJI	RGCY	6 cut(s)	8, 146, 182, 226, 331, 337
CviKI_1	RGCY	6 cut(s)	8, 146, 182, 226, 331, 337
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	2 cut(s)	197, 203
DpnII	GATC	2 cut(s)	195, 201
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	9, 332
Eco47I	GGWCC	2 cut(s)	38, 154
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	2 cut(s)	38, 154
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	9, 332
ErhI	CCWWGG	2 cut(s)	9, 332
FaeI	CATG	4 cut(s)	13, 202, 304, 336
FaiI	YATR	5 cut(s)	11, 200, 241, 302, 334
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	4 cut(s)	9, 198, 300, 332
FauI	CCCGC	1 cut(s)	165
FbaI	TGATCA	2 cut(s)	195, 201
Fnu4HI	GCNGC	4 cut(s)	6, 116, 144, 247
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	4 cut(s)	6, 116, 144, 247
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	4 cut(s)	6, 116, 144, 247
GsaI	CCCAGC	2 cut(s)	122, 341
HaeIII	GGCC	2 cut(s)	8, 182
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	4 cut(s)	13, 202, 304, 336
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	5 cut(s)	20, 32, 45, 73, 85
HphI	GGTGA	2 cut(s)	143, 187
Hpy188I	TCNGA	5 cut(s)	31, 61, 84, 150, 230
Hpy188III	TCNNGA	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	56, 145, 172
HpyCH4IV	ACGT	2 cut(s)	108, 135
HpyCH4V	TGCA	5 cut(s)	164, 249, 286, 300, 304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 292, 301
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	108, 135
Hsp92II	CATG	4 cut(s)	13, 202, 304, 336
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	2 cut(s)	195, 201
Kzo9I	GATC	2 cut(s)	195, 201
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	9 cut(s)	27, 54, 104, 158, 174, 204, 272, 310, 323
Lsp1109I	GCAGC	1 cut(s)	233
MaeII	ACGT	2 cut(s)	108, 135
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	197, 203
MboI	GATC	2 cut(s)	195, 201
MboII	GAAGA	4 cut(s)	18, 62, 179, 221
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	29, 41, 94
MnlI	CCTC	4 cut(s)	110, 132, 250, 327
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	11, 292, 301
NcoI	CCATGG	2 cut(s)	9, 332
NdeII	GATC	2 cut(s)	195, 201
NlaIII	CATG	4 cut(s)	13, 202, 304, 336
NlaIV	GGNNCC	3 cut(s)	39, 147, 156
NmuCI	GTSAC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	304
PaeI	GCATGC	1 cut(s)	304
PagI	TCATGA	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	45, 73
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	7, 117, 145, 248
PleI	GAGTC	3 cut(s)	28, 40, 93
PpsI	GAGTC	3 cut(s)	28, 40, 93
PpuMI	RGGWCCY	2 cut(s)	38, 154
Psp1406I	AACGTT	1 cut(s)	108
Psp5II	RGGWCCY	2 cut(s)	38, 154
Psp6I	CCWGG	1 cut(s)	40
PspFI	CCCAGC	2 cut(s)	118, 337
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	3 cut(s)	39, 147, 156
PspPI	GGNCC	2 cut(s)	38, 154
PspPPI	RGGWCCY	2 cut(s)	38, 154
RseI	CAYNNNNRTG	1 cut(s)	14
SatI	GCNGC	4 cut(s)	6, 116, 144, 247
Sau3AI	GATC	2 cut(s)	195, 201
Sau96I	GGNCC	2 cut(s)	38, 154
SchI	GAGTC	3 cut(s)	29, 41, 94
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	6 cut(s)	102, 111, 138, 156, 177, 228
SinI	GGWCC	2 cut(s)	38, 154
SmiMI	CAYNNNNRTG	1 cut(s)	14
SphI	GCATGC	1 cut(s)	304
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	5 cut(s)	5, 14, 116, 143, 158
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	2 cut(s)	9, 332
TaiI	ACGT	2 cut(s)	111, 138
TaqI	TCGA	2 cut(s)	48, 102
TasI	AATT	1 cut(s)	342
TauI	GCSGC	3 cut(s)	8, 118, 146
TfiI	GAWTC	2 cut(s)	45, 73
TscAI	CASTG	2 cut(s)	75, 198
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	75, 198
VpaK11BI	GGWCC	2 cut(s)	38, 154
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.