Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010292

Physical Location & Seq

Genomic Coordinates Reverse (-)

7334314 .. 7337018

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAGAACACACGGCCAAACGAAGAAGAAGGAAGAATAAGTGAACCAAATTGGAGCGAACGAGTGGAGGATCTCGTGGTAGCCGGCGACGTCACGGCGGCGATCTCCTTTCTCGAGTCTTTGGAGACCAATCTTCAATCGCGGTTAGGTTCTTCCTCCTCCGGCGAGAGAACGGAGTTTGGGCTTCAATTATCCGCCGCTCTTACGCAGTTGGCGGATCTCTACTCTTCTGAGGGACTTTCCCTTAAATCCGATGAGCTTCGAACTCGCTCTTCCCTCATTAAGCAACGAGCGTTGGATTGTGATCTTGCCTCTTCAAGAAGTTCCGGCAATGTAGAGAATCAATCTGTTGCTTCCAGTGGACTCAAGTCTGACCCAAATGTCTCAAGCTTTGATGCTGATGGGAAAACGGAGGATTCCAAAGTATCTAGCAGTAATTCAGCTGCTCATGATTCTTCAGATGATGATTGGGAAGCTCTTGCAGATGTTGAACCGAGTAAGTTACTCCCCGTAGAAGAGTTGCCTGAAATATCAAAGCTTTCGGTTGAAGAACCTAAAGTTCAAGGACCTAAGAGACGTGGAAGGGGAACGTTTACTTATAAGAGTGATGCAATGTACAGTGATCGAGATTTCTCTGAGTCGAGGTTTGATGATGATTCAGAAGATAACGATTTATCTCGTGAGTCAGAGAAGACTGATGAATCACTGAAATCCAAGTATGGCACACGCCATGTCCTCGTACTTGCTGGTTTTTCTCCAAGTTTGAGAACTACTGAATTGGAGAAGCTATTTAAAGACTTCAAAGATAGTGGATTTATCATTCGTTGGGTCAATGATACAACAGCACTTGCAGTCTTCAAAACCCCTTCAGCTGCTCTAGAGGCTTGCAAGCATGTTCAATGTTCATTCACAATACGTGTACTCGATGATAACGATTCTCTTTTGGGCTCAATTTCTGGAAAAGATTTGGAACCGCCGTCTCAAAGACCAAAGACATCAGCGAAAACAGCTCAACGGTTGATTGCTCACAGCATGGGATTGAAGCTACCGGCTTCTGGATTCGGGTCTAAAGAGCGAGACCAAGAAGCTGCCCGGAAAAACCGGATTGTCTCGAGACAGAAACAACGGGAAGATGCTTGGGGAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

383

Amino Acids

42.09

Weight (kDa)

4.87

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22120
fragaria_vesca	FvH4_3g26410 FvH4_3g26410 FvH4_3g26410 FvH4_3g26410
malus_domestica	MD14G1087800.v1.1
prunus_persica	Prupe.7G038700_v2.0.a1 Prupe.7G038700_v2.0.a1
pyrus_communis	pycom14g07790
rosa_chinensis	RchiOBHm_Chr5g0048501
rosa_laevigata	RLG00000034530
rosa_multiflora	Rmu_sc0007341.1_g000051 Rmu_sc0021801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033300
rosa_rugosa	Rorug05G0239100
rosa_samantha	Rh5AG318900 Rh5BG329000 Rh5CG355000 Rh5DG340200
rosa_wichuraiana	Rw5G029810 Rw5G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AasI	GACNNNNNNGTC	1 cut(s)	380
AatII	GACGTC	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	200
AccII	CGCG	1 cut(s)	142
AciI	CCGC	6 cut(s)	98, 142, 195, 198, 215, 974
AclI	AACGTT	1 cut(s)	590
AclWI	GGATC	2 cut(s)	78, 225
AcoI	YGGCCR	1 cut(s)	14
AcuI	CTGAAG	2 cut(s)	441, 852
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	3 cut(s)	617, 741, 921
AfiI	CCNNNNNNNGG	1 cut(s)	1055
AflIII	ACRYGT	1 cut(s)	916
AjiI	CACGTC	1 cut(s)	578
Alw26I	GTCTC	7 cut(s)	119, 388, 568, 984, 1071, 1108, 1114
AlwI	GGATC	2 cut(s)	78, 225
Ama87I	CYCGRG	2 cut(s)	113, 1111
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	443, 872, 1088
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	1093
AsuII	TTCGAA	1 cut(s)	262
AvaI	CYCGRG	2 cut(s)	113, 1111
AvaII	GGWCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	950
BauI	CACGAG	2 cut(s)	74, 678
BbsI	GAAGAC	2 cut(s)	698, 847
BbvI	GCAGC	3 cut(s)	430, 859, 1075
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	3 cut(s)	29, 111, 961
BcnI	CCSGG	1 cut(s)	1093
BcoDI	GTCTC	7 cut(s)	119, 388, 568, 984, 1071, 1108, 1114
BfaI	CTAG	2 cut(s)	429, 878
BisI	GCNGC	5 cut(s)	99, 198, 444, 873, 1089
BlsI	GCNGC	5 cut(s)	100, 199, 445, 874, 1090
Bme1390I	CCNGG	1 cut(s)	1093
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	2 cut(s)	113, 1111
BmgBI	CACGTC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	972
BmrFI	CCNGG	1 cut(s)	1093
BmsI	GCATC	3 cut(s)	385, 598, 1123
BoxI	GACNNNNGTC	1 cut(s)	367
BpiI	GAAGAC	2 cut(s)	698, 847
Bpu14I	TTCGAA	1 cut(s)	262
BpuEI	CTTGAG	2 cut(s)	350, 370
BpuMI	CCSGG	1 cut(s)	1093
BsaAI	YACGTR	1 cut(s)	917
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	2 cut(s)	119, 1071
BsaWI	WCCGGW	1 cut(s)	1101
Bsc4I	CCNNNNNNNGG	1 cut(s)	1055
Bse118I	RCCGGY	2 cut(s)	83, 1048
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	2 cut(s)	337, 618
Bse8I	GATNNNNATC	1 cut(s)	303
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	1055
BseMI	GCAATG	2 cut(s)	337, 618
BseMII	CTCAG	2 cut(s)	222, 627
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	430, 859, 1075
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	16
BsiHKCI	CYCGRG	2 cut(s)	113, 1111
BsiSI	CCGG	6 cut(s)	84, 162, 327, 1049, 1093, 1102
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	1055
BsmAI	GTCTC	7 cut(s)	119, 388, 568, 984, 1071, 1108, 1114
BsmBI	CGTCTC	2 cut(s)	568, 984
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	16
Bso31I	GGTCTC	2 cut(s)	119, 1071
BsoBI	CYCGRG	2 cut(s)	113, 1111
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	5 cut(s)	70, 102, 217, 304, 622
BspACI	CCGC	6 cut(s)	98, 142, 195, 198, 215, 974
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	2 cut(s)	223, 628
BspFNI	CGCG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	972
BspPI	GGATC	2 cut(s)	78, 225
BspQI	GCTCTTC	1 cut(s)	277
BspT104I	TTCGAA	1 cut(s)	262
BspTNI	GGTCTC	2 cut(s)	119, 1071
BsrBI	CCGCTC	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	337, 618
BsrFI	RCCGGY	2 cut(s)	83, 1048
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	2 cut(s)	83, 1048
BssMI	GATC	5 cut(s)	70, 102, 217, 304, 622
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	2 cut(s)	74, 678
Bst2BI	CACGAG	2 cut(s)	74, 678
Bst4CI	ACNGT	2 cut(s)	620, 1017
Bst6I	CTCTTC	4 cut(s)	232, 277, 319, 510
BstACI	GRCGYC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	615
BstBAI	YACGTR	1 cut(s)	917
BstBI	TTCGAA	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	85, 886, 890
BstDEI	CTNAG	3 cut(s)	231, 570, 636
BstFNI	CGCG	1 cut(s)	142
BstKTI	GATC	5 cut(s)	73, 105, 220, 307, 625
BstMAI	GTCTC	7 cut(s)	119, 388, 568, 984, 1071, 1108, 1114
BstMBI	GATC	5 cut(s)	70, 102, 217, 304, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	881, 1007
BstNSI	RCATGY	1 cut(s)	896
BstPAI	GACNNNNGTC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	1091
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	430, 859, 1075
BstV2I	GAAGAC	2 cut(s)	698, 847
BstX2I	RGATCY	2 cut(s)	70, 217
BstYI	RGATCY	2 cut(s)	70, 217
BsuRI	GGCC	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	578
BtsIMutI	CAGTG	3 cut(s)	364, 625, 704
Cac8I	GCNNGC	3 cut(s)	85, 886, 890
CciI	TCATGA	1 cut(s)	448
Cfr10I	RCCGGY	2 cut(s)	83, 1048
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	3 cut(s)	616, 740, 920
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	4 cut(s)	449, 731, 893, 1033
CviQI	GTAC	3 cut(s)	616, 740, 920
DdeI	CTNAG	3 cut(s)	231, 570, 636
DpnI	GATC	5 cut(s)	72, 104, 219, 306, 624
DpnII	GATC	5 cut(s)	70, 102, 217, 304, 622
DraI	TTTAAA	1 cut(s)	793
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	4 cut(s)	232, 277, 319, 510
EarI	CTCTTC	4 cut(s)	232, 277, 319, 510
EciI	GGCGGA	2 cut(s)	184, 230
Eco24I	GRGCYC	1 cut(s)	950
Eco31I	GGTCTC	2 cut(s)	119, 1071
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	2 cut(s)	441, 852
Eco88I	CYCGRG	2 cut(s)	113, 1111
EcoO109I	RGGNCCY	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	950
Esp3I	CGTCTC	2 cut(s)	568, 984
FaeI	CATG	4 cut(s)	452, 734, 896, 1036
FaiI	YATR	6 cut(s)	450, 600, 720, 732, 894, 1034
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	4 cut(s)	448, 730, 892, 1032
Fnu4HI	GCNGC	5 cut(s)	99, 198, 444, 873, 1089
FriOI	GRGCYC	1 cut(s)	950
Fsp4HI	GCNGC	5 cut(s)	99, 198, 444, 873, 1089
FspBI	CTAG	2 cut(s)	429, 878
GluI	GCNGC	5 cut(s)	99, 198, 444, 873, 1089
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	6 cut(s)	84, 162, 327, 1049, 1093, 1102
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	452, 734, 896, 1036
HindIII	AAGCTT	2 cut(s)	388, 536
HpaII	CCGG	6 cut(s)	84, 162, 327, 1049, 1093, 1102
Hpy166II	GTNNAC	4 cut(s)	44, 362, 594, 920
Hpy188I	TCNGA	7 cut(s)	232, 253, 373, 460, 637, 661, 688
Hpy8I	GTNNAC	4 cut(s)	44, 362, 594, 920
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	23, 576, 876
HpyCH4III	ACNGT	2 cut(s)	620, 1017
HpyCH4IV	ACGT	4 cut(s)	90, 577, 590, 916
HpyCH4V	TGCA	4 cut(s)	482, 611, 851, 888
HpyF10VI	GCNNNNNNNGC	2 cut(s)	881, 1007
HpyF3I	CTNAG	3 cut(s)	231, 570, 636
HpySE526I	ACGT	4 cut(s)	90, 577, 590, 916
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	452, 734, 896, 1036
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	70, 102, 217, 304, 622
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	3 cut(s)	430, 859, 1075
LweI	GCATC	3 cut(s)	385, 598, 1123
MaeI	CTAG	2 cut(s)	429, 878
MaeII	ACGT	4 cut(s)	90, 577, 590, 916
MaeIII	GTNAC	2 cut(s)	91, 501
MalI	GATC	5 cut(s)	72, 104, 219, 306, 624
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	5 cut(s)	70, 102, 217, 304, 622
MflI	RGATCY	2 cut(s)	70, 217
MhlI	GDGCHC	1 cut(s)	950
MluCI	AATT	5 cut(s)	49, 188, 436, 776, 951
MlyI	GAGTC	4 cut(s)	125, 357, 647, 692
MmeI	TCCRAC	1 cut(s)	276
MroNI	GCCGGC	1 cut(s)	83
MseI	TTAA	3 cut(s)	246, 282, 792
MspA1I	CMGCKG	2 cut(s)	443, 872
MspI	CCGG	6 cut(s)	84, 162, 327, 1049, 1093, 1102
MspR9I	CCNGG	1 cut(s)	1093
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	881, 1007
NaeI	GCCGGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	1093
NdeII	GATC	5 cut(s)	70, 102, 217, 304, 622
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	4 cut(s)	452, 734, 896, 1036
NlaIV	GGNNCC	1 cut(s)	972
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	896
NspV	TTCGAA	1 cut(s)	262
PaeR7I	CTCGAG	2 cut(s)	113, 1111
PagI	TCATGA	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	930
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	7 cut(s)	340, 416, 452, 656, 701, 935, 1059
PkrI	GCNGC	5 cut(s)	100, 199, 445, 874, 1090
PleI	GAGTC	4 cut(s)	124, 357, 646, 691
PpsI	GAGTC	4 cut(s)	124, 357, 646, 691
Ppu21I	YACGTR	1 cut(s)	917
PpuMI	RGGWCCY	1 cut(s)	566
PshAI	GACNNNNGTC	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	972
PspPI	GGNCC	1 cut(s)	566
PspPPI	RGGWCCY	1 cut(s)	566
PsuI	RGATCY	2 cut(s)	70, 217
PvuII	CAGCTG	2 cut(s)	443, 872
RsaI	GTAC	3 cut(s)	617, 741, 921
RsaNI	GTAC	3 cut(s)	616, 740, 920
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	3 cut(s)	246, 282, 792
SatI	GCNGC	5 cut(s)	99, 198, 444, 873, 1089
Sau3AI	GATC	5 cut(s)	70, 102, 217, 304, 622
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	4 cut(s)	125, 357, 647, 692
ScrFI	CCNGG	1 cut(s)	1093
SduI	GDGCHC	1 cut(s)	950
SfaNI	GCATC	3 cut(s)	385, 598, 1123
Sfr274I	CTCGAG	2 cut(s)	113, 1111
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	1 cut(s)	566
SlaI	CTCGAG	2 cut(s)	113, 1111
SmlI	CTYRAG	4 cut(s)	113, 365, 385, 1111
SmoI	CTYRAG	4 cut(s)	113, 365, 385, 1111
Sse9I	AATT	5 cut(s)	49, 188, 436, 776, 951
SsiI	CCGC	6 cut(s)	98, 142, 195, 198, 215, 974
SspMI	CTAG	2 cut(s)	429, 878
StyD4I	CCNGG	1 cut(s)	1091
TaaI	ACNGT	2 cut(s)	620, 1017
TaiI	ACGT	4 cut(s)	93, 580, 593, 919
TaqI	TCGA	6 cut(s)	114, 262, 625, 641, 924, 1112
TasI	AATT	5 cut(s)	49, 188, 436, 776, 951
TatI	WGTACW	2 cut(s)	615, 919
TauI	GCSGC	2 cut(s)	101, 200
TfiI	GAWTC	7 cut(s)	340, 416, 452, 656, 701, 935, 1059
Tru1I	TTAA	3 cut(s)	246, 282, 792
Tru9I	TTAA	3 cut(s)	246, 282, 792
TscAI	CASTG	3 cut(s)	364, 625, 711
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	3 cut(s)	443, 872, 1088
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	714, 894
TspGWI	ACGGA	2 cut(s)	188, 425
TspRI	CASTG	3 cut(s)	364, 625, 711
VpaK11BI	GGWCC	1 cut(s)	566
XbaI	TCTAGA	1 cut(s)	877
XceI	RCATGY	1 cut(s)	896
XhoI	CTCGAG	2 cut(s)	113, 1111
XspI	CTAG	2 cut(s)	429, 878
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.