Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010292

Physical Location & Seq

Genomic Coordinates Reverse (-)

19447916 .. 19455147

Gene Structure 7232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26410.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCGAGAGCAGAAGAAGACAACTGGAGCGAGGCAGTGGAAGATCTTGTAACATCAGGAGACACCGACGCAGCCATATCTGTACTGGAATCCGTAATCTCCAATTTGGAAAACAAAGGCTTGCCCGATTCAGGTCCTCCTGAGTTGGCTTCTGCTCTTTCCGATCTTGCAGAACTCTACTCCTCCAAAGGCTTCTCCCTCAAAGCAGACGACCTTCAGTCTCGCGCTTCCCTCATCAAGCTTCGTCACTCTTCCTCTTCCACTTCTGGTGTTGCGACAGAGAAGCAGAGCTCGATGCCCGGAAAGCATTCAACAGATGGACATCTTGAAAAATCAACGAAATCGCAGGATTCTTCTGCTTGCAATGGGGCTTCGGATGATGATTGGGAAGCTATTGCAGACCGCACACCTGACGAATTACTCTCTTCACAATCTTTGCCCGGAGTATCAAAACTTTCTTTGGAAGATACCAAAGTTCAAGCCCCTAAGCGGCGTGGAAGAGGAACATTTGCATACAAGAAACATGAACTTTACAGTGATCAATTATCTAGTAAGATAGTAGTTGATAATGATAGCTTGGAGGAAGAAAGTGAGTGCCATAATTTAGAAGGCGGTGAAGAAACAAGAAACTCAAAATATGGTACACGACACATTCTTGTTTTAGCTGGCTTTCCACCAAGTACTAGAACAATGGAGTTAGAGAATCTTTTTAAGGACTTCAGAGATCATGGAGTTGTTATTCGCTGGGTCAATGATACGGTCGCACTTGCAGTTTTCCAAACACCAGCGATCGCACTTGAAGCTCGTAATCATATTCAATGTTCTATGACAGTTCGAGTGCTTAATGAGGATGATACCCTTTTAAGCTCAATTTCACCAAAAGATCTGGAGCCTCCTCGGCAAAGGCCAAAAACATCAGCAAGAACTGCCCAGAGGCTCATTGCACATGGAATGGGACTGAAATTACCTTCAACTGCCTTCGGGTCCCGAGACTTGAAGGAACAGGAAAATGATCGAAGGAGCCGCATAGTCACGAGGCAAAAATTGAAAGATGATGCTTGGGGTGGGGATGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

39.39

Weight (kDa)

5.21

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22120
fragaria_vesca	FvH4_3g26410 FvH4_3g26410 FvH4_3g26410 FvH4_3g26410
malus_domestica	MD14G1087800.v1.1
prunus_persica	Prupe.7G038700_v2.0.a1 Prupe.7G038700_v2.0.a1
pyrus_communis	pycom14g07790
rosa_chinensis	RchiOBHm_Chr5g0048501
rosa_laevigata	RLG00000034530
rosa_multiflora	Rmu_sc0007341.1_g000051 Rmu_sc0021801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033300
rosa_rugosa	Rorug05G0239100
rosa_samantha	Rh5AG318900 Rh5BG329000 Rh5CG355000 Rh5DG340200
rosa_wichuraiana	Rw5G029810 Rw5G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	4 cut(s)	403, 490, 612, 1024
AcuI	CTGAAG	2 cut(s)	200, 703
AfaI	GTAC	3 cut(s)	84, 643, 682
AfiI	CCNNNNNNNGG	2 cut(s)	131, 489
AgsI	TTSAA	8 cut(s)	312, 329, 479, 800, 818, 972, 997, 1048
AhdI	GACNNNNNGTC	1 cut(s)	217
AluBI	AGCT	7 cut(s)	241, 291, 392, 576, 665, 803, 867
AluI	AGCT	7 cut(s)	241, 291, 392, 576, 665, 803, 867
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	3 cut(s)	54, 225, 984
Ama87I	CYCGRG	1 cut(s)	987
AoxI	GGCC	1 cut(s)	905
ApeKI	GCWGC	1 cut(s)	71
AsiSI	GCGATCGC	1 cut(s)	792
Asp700I	GAANNNNTTC	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	134, 984
AsuC2I	CCSGG	2 cut(s)	300, 441
AsuHPI	GGTGA	2 cut(s)	626, 867
AvaI	CYCGRG	1 cut(s)	987
AvaII	GGWCC	2 cut(s)	134, 984
BaeI	ACNNNNGTAYC	2 cut(s)	459, 492
BanII	GRGCYC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	1033
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	311
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	2 cut(s)	300, 441
BcoDI	GTCTC	3 cut(s)	54, 225, 984
BfaI	CTAG	2 cut(s)	549, 684
BglI	GCCNNNNNGGC	1 cut(s)	898
BglII	AGATCT	2 cut(s)	43, 883
BisI	GCNGC	3 cut(s)	72, 491, 1024
BlsI	GCNGC	3 cut(s)	73, 492, 1025
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	2 cut(s)	300, 441
Bme18I	GGWCC	2 cut(s)	134, 984
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	987
BmgT120I	GGNCC	2 cut(s)	134, 984
BmiI	GGNNCC	4 cut(s)	891, 985, 986, 1022
BmrFI	CCNGG	2 cut(s)	300, 441
BmsI	GCATC	2 cut(s)	285, 1045
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	46, 908
Bpu10I	CCTNAGC	1 cut(s)	486
BpuMI	CCSGG	2 cut(s)	300, 441
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	896
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 489
Bse1I	ACTGG	2 cut(s)	29, 90
Bse3DI	GCAATG	2 cut(s)	370, 939
Bse8I	GATNNNNATC	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	896
BseGI	GGATG	3 cut(s)	382, 856, 1075
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	131, 489
BseMI	GCAATG	2 cut(s)	370, 939
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	29, 90
BseRI	GAGGAG	2 cut(s)	172, 885
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	2 cut(s)	762, 792
BshFI	GGCC	1 cut(s)	907
BsiEI	CGRYCG	2 cut(s)	762, 792
BsiHKAI	GWGCWC	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	987
BsiSI	CCGG	2 cut(s)	300, 441
BslFI	GGGAC	2 cut(s)	969, 970
BslI	CCNNNNNNNGG	2 cut(s)	131, 489
BsmAI	GTCTC	3 cut(s)	54, 225, 984
BsmFI	GGGAC	2 cut(s)	969, 970
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	907
BsoBI	CYCGRG	1 cut(s)	987
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	7 cut(s)	43, 163, 538, 724, 789, 883, 1012
BspACI	CCGC	4 cut(s)	403, 490, 612, 1024
BspANI	GGCC	1 cut(s)	907
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	4 cut(s)	891, 985, 986, 1022
BsrDI	GCAATG	2 cut(s)	370, 939
BsrI	ACTGG	2 cut(s)	29, 90
BssECI	CCNNGG	1 cut(s)	896
BssMI	GATC	7 cut(s)	43, 163, 538, 724, 789, 883, 1012
BssSI	CACGAG	1 cut(s)	1033
Bst2BI	CACGAG	1 cut(s)	1033
Bst4CI	ACNGT	4 cut(s)	536, 760, 832, 1077
Bst6I	CTCTTC	4 cut(s)	256, 262, 430, 493
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstC8I	GCNNGC	3 cut(s)	122, 361, 667
BstDEI	CTNAG	2 cut(s)	141, 486
BstF5I	GGATG	3 cut(s)	382, 856, 1075
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	7 cut(s)	46, 166, 541, 727, 792, 886, 1015
BstMAI	GTCTC	3 cut(s)	54, 225, 984
BstMBI	GATC	7 cut(s)	43, 163, 538, 724, 789, 883, 1012
BstMCI	CGRYCG	2 cut(s)	762, 792
BstMWI	GCNNNNNNNGC	4 cut(s)	304, 800, 898, 926
BstSCI	CCNGG	2 cut(s)	298, 439
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	2 cut(s)	43, 883
BstYI	RGATCY	2 cut(s)	43, 883
BsuRI	GGCC	1 cut(s)	907
BtsCI	GGATG	3 cut(s)	382, 856, 1075
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 541
Cac8I	GCNNGC	3 cut(s)	122, 361, 667
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	134, 984
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	83, 642, 681
CviAII	CATG	3 cut(s)	524, 728, 947
CviQI	GTAC	3 cut(s)	83, 642, 681
DdeI	CTNAG	2 cut(s)	141, 486
DpnI	GATC	7 cut(s)	45, 165, 540, 726, 791, 885, 1014
DpnII	GATC	7 cut(s)	43, 163, 538, 724, 789, 883, 1012
DriI	GACNNNNNGTC	1 cut(s)	217
Eam1104I	CTCTTC	4 cut(s)	256, 262, 430, 493
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	4 cut(s)	256, 262, 430, 493
Ecl136II	GAGCTC	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	134, 984
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	200, 703
Eco88I	CYCGRG	1 cut(s)	987
EcoICRI	GAGCTC	1 cut(s)	291
EcoO109I	RGGNCCY	2 cut(s)	134, 984
EcoT38I	GRGCYC	1 cut(s)	293
FaeI	CATG	3 cut(s)	527, 731, 950
FaqI	GGGAC	2 cut(s)	969, 970
FatI	CATG	3 cut(s)	523, 727, 946
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	72, 491, 1024
FokI	GGATG	2 cut(s)	389, 863
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	72, 491, 1024
FspBI	CTAG	2 cut(s)	549, 684
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	3 cut(s)	72, 491, 1024
GsaI	CCCAGC	1 cut(s)	748
GsuI	CTGGAG	2 cut(s)	46, 908
HaeIII	GGCC	1 cut(s)	907
HapII	CCGG	2 cut(s)	300, 441
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	527, 731, 950
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	4 cut(s)	89, 128, 350, 703
HpaII	CCGG	2 cut(s)	300, 441
HphI	GGTGA	2 cut(s)	626, 867
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	3 cut(s)	163, 376, 722
Hpy188III	TCNNGA	6 cut(s)	57, 140, 326, 887, 987, 1033
Hpy8I	GTNNAC	1 cut(s)	644
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	6 cut(s)	224, 602, 978, 988, 991, 1011
HpyCH4III	ACNGT	4 cut(s)	536, 760, 832, 1077
HpyCH4V	TGCA	6 cut(s)	170, 363, 398, 512, 770, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	304, 800, 898, 926
HpyF3I	CTNAG	2 cut(s)	141, 486
Hsp92II	CATG	3 cut(s)	527, 731, 950
HspAI	GCGC	1 cut(s)	225
KflI	GGGWCCC	1 cut(s)	984
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	7 cut(s)	43, 163, 538, 724, 789, 883, 1012
LmnI	GCTCC	3 cut(s)	27, 889, 1020
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	285, 1045
MaeI	CTAG	2 cut(s)	549, 684
MaeIII	GTNAC	3 cut(s)	49, 245, 1030
MalI	GATC	7 cut(s)	45, 165, 540, 726, 791, 885, 1014
MboI	GATC	7 cut(s)	43, 163, 538, 724, 789, 883, 1012
MflI	RGATCY	2 cut(s)	43, 883
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	7 cut(s)	103, 416, 542, 601, 870, 962, 1043
MroXI	GAANNNNTTC	1 cut(s)	307
MseI	TTAA	3 cut(s)	711, 843, 863
MspI	CCGG	2 cut(s)	300, 441
MspR9I	CCNGG	2 cut(s)	300, 441
Mva1269I	GAATGC	1 cut(s)	307
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	304, 800, 898, 926
NciI	CCSGG	2 cut(s)	300, 441
NdeII	GATC	7 cut(s)	43, 163, 538, 724, 789, 883, 1012
NlaIII	CATG	3 cut(s)	527, 731, 950
NlaIV	GGNNCC	4 cut(s)	891, 985, 986, 1022
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	2 cut(s)	245, 1030
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	307
PfeI	GAWTC	4 cut(s)	89, 128, 350, 703
PkrI	GCNGC	3 cut(s)	73, 492, 1025
Ple19I	CGATCG	1 cut(s)	792
PpuMI	RGGWCCY	2 cut(s)	134, 984
Psp124BI	GAGCTC	1 cut(s)	293
Psp5II	RGGWCCY	2 cut(s)	134, 984
PspFI	CCCAGC	1 cut(s)	744
PspN4I	GGNNCC	4 cut(s)	891, 985, 986, 1022
PspPI	GGNCC	2 cut(s)	134, 984
PspPPI	RGGWCCY	2 cut(s)	134, 984
PsuI	RGATCY	2 cut(s)	43, 883
PvuI	CGATCG	1 cut(s)	792
RgaI	GCGATCGC	1 cut(s)	792
RsaI	GTAC	3 cut(s)	84, 643, 682
RsaNI	GTAC	3 cut(s)	83, 642, 681
SacI	GAGCTC	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	711, 843, 863
SatI	GCNGC	3 cut(s)	72, 491, 1024
Sau3AI	GATC	7 cut(s)	43, 163, 538, 724, 789, 883, 1012
Sau96I	GGNCC	2 cut(s)	134, 984
ScaI	AGTACT	1 cut(s)	682
ScrFI	CCNGG	2 cut(s)	300, 441
SduI	GDGCHC	1 cut(s)	293
SfaAI	GCGATCGC	1 cut(s)	792
SfaNI	GCATC	2 cut(s)	285, 1045
SgfI	GCGATCGC	1 cut(s)	792
SinI	GGWCC	2 cut(s)	134, 984
Sse9I	AATT	7 cut(s)	103, 416, 542, 601, 870, 962, 1043
SsiI	CCGC	4 cut(s)	403, 490, 612, 1024
SspMI	CTAG	2 cut(s)	549, 684
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	298, 439
TaaI	ACNGT	4 cut(s)	536, 760, 832, 1077
TaqI	TCGA	3 cut(s)	293, 835, 1015
TasI	AATT	7 cut(s)	103, 416, 542, 601, 870, 962, 1043
TatI	WGTACW	2 cut(s)	82, 680
TauI	GCSGC	2 cut(s)	493, 1026
TfiI	GAWTC	4 cut(s)	89, 128, 350, 703
Tru1I	TTAA	3 cut(s)	711, 843, 863
Tru9I	TTAA	3 cut(s)	711, 843, 863
TscAI	CASTG	2 cut(s)	42, 541
TseFI	GTSAC	2 cut(s)	245, 1030
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	2 cut(s)	245, 1030
TspDTI	ATGAA	1 cut(s)	540
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	42, 541
VpaK11BI	GGWCC	2 cut(s)	134, 984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	307
XspI	CTAG	2 cut(s)	549, 684
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.