Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0010292

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG355000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCGAGAGCAGAAGAAGAAGAAGACAACTGGAGTGAGGCAGTGGAAGATCTTGTAACAGCAGGAGACACCGACGCAGCCATAGCTCTTTTGGAATCGGTAATCTCCAATCTCGAAAACAAAGACTCTCCTGAGTTGGCCTCCGCTCTCTGCGACTTGGCCAAGCTCTACTCCTCCAAGGGCTTCTCTCTCAAAGCTGACGATCTTCAGTCTCGCGCTTCCCTCATCAAGCTTCGTCACTCTTCCTCTTCTGGTGTTGCTACAGAGAAGCAGAGCTTGATGCCTGGAAAGCATTCAACAGATGGACATGTTGAAAACTCAACGAAATCGCAGGGTTCTTCTTCTTGCAATGGCTCTTCGGATGATGATTGGGAAGCTATTGCAGACTGCACACCTGATGAATTACTCTCCTCACAATCTTTGCCCGGAGTATCAAAACTTTCTTTGGAAGATACCAAAGTTCAAACCCCTAAGCGGCGTGGAAGAGGAACATTTGCATACAAGAAACGTGAACTGTACAGTGATCAAATATCTAATAAGATTGTAGTTGATAATGATAGCTTGGAGGAAGAAAATGAGGGCCATAATTTAGAGGGCAGTGAAGAAACAAGAAACTCAAAATATGGCACACGTCACATTCTTGTTTTAGCTGACTTTCCACCAAGTACTAGGACAATAGAGTTGGAGAATCTTTTTGAGGACTTCAGAGATCATGGAGTTGTTATTCGCTGGGTTAATGATACGGTTGCCCTTGCCGTTTTCAGAACACCAGCGATTGCACTTGAGGCTCGTAGTCATATTCAATGTTCTATGACAGTTCGAGTGCTTGATGAGGATGATACCCTTCTGAGTTCAATTTCACCAAAAGATCTGGAGCCTCCTCGGCAAAGGCCACAAACATCAGCAAGAACTGCCCAGAGGCTCATTGCACATGGAATGGGATTGAAATTACCTTCGACTGCCTTCGGGTCCAGAGACTTGAAGAAACAGGAAAATGATCGAAGGAGCCGCATAGTCACGCGACAAAAATTGAAAGATGATGCTTGGGGTGGGGACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

38.96

Weight (kDa)

5.07

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22120
fragaria_vesca	FvH4_3g26410 FvH4_3g26410 FvH4_3g26410 FvH4_3g26410
malus_domestica	MD14G1087800.v1.1
prunus_persica	Prupe.7G038700_v2.0.a1 Prupe.7G038700_v2.0.a1
pyrus_communis	pycom14g07790
rosa_chinensis	RchiOBHm_Chr5g0048501
rosa_laevigata	RLG00000034530
rosa_multiflora	Rmu_sc0007341.1_g000051 Rmu_sc0021801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033300
rosa_rugosa	Rorug05G0239100
rosa_samantha	Rh5AG318900 Rh5BG329000 Rh5CG355000 Rh5DG340200
rosa_wichuraiana	Rw5G029810 Rw5G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	146
AccII	CGCG	2 cut(s)	216, 1021
AciI	CCGC	3 cut(s)	144, 475, 1009
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	2 cut(s)	191, 688
AfaI	GTAC	2 cut(s)	518, 667
AfiI	CCNNNNNNNGG	1 cut(s)	474
AflIII	ACRYGT	2 cut(s)	307, 629
AgsI	TTSAA	8 cut(s)	297, 314, 464, 803, 855, 946, 982, 1033
AjiI	CACGTC	1 cut(s)	632
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	8 cut(s)	86, 166, 197, 232, 276, 377, 561, 650
AluI	AGCT	8 cut(s)	86, 166, 197, 232, 276, 377, 561, 650
Alw26I	GTCTC	3 cut(s)	60, 216, 969
AoxI	GGCC	4 cut(s)	138, 159, 580, 890
ApeKI	GCWGC	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	580, 969
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	852
AvaII	GGWCC	1 cut(s)	969
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BalI	TGGCCA	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	740
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	60, 216, 969
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	883
BglII	AGATCT	2 cut(s)	49, 868
BisI	GCNGC	3 cut(s)	78, 476, 1009
BlsI	GCNGC	3 cut(s)	79, 477, 1010
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	2 cut(s)	285, 426
Bme18I	GGWCC	1 cut(s)	969
BmgBI	CACGTC	1 cut(s)	632
BmgT120I	GGNCC	2 cut(s)	580, 969
BmiI	GGNNCC	3 cut(s)	876, 970, 1007
BmrFI	CCNGG	2 cut(s)	285, 426
BmsI	GCATC	2 cut(s)	270, 1030
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	2 cut(s)	52, 893
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	177, 881
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	1 cut(s)	35
Bse3DI	GCAATG	2 cut(s)	355, 924
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	177, 881
BseGI	GGATG	2 cut(s)	367, 841
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMI	GCAATG	2 cut(s)	355, 924
BseMII	CTCAG	2 cut(s)	123, 839
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	3 cut(s)	163, 400, 870
BseXI	GCAGC	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	729
BsgI	GTGCAG	1 cut(s)	373
Bsh1236I	CGCG	2 cut(s)	216, 1021
BshFI	GGCC	4 cut(s)	140, 161, 582, 892
BsiSI	CCGG	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	3 cut(s)	60, 216, 969
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	4 cut(s)	140, 161, 582, 892
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	6 cut(s)	49, 202, 523, 709, 868, 997
BspACI	CCGC	3 cut(s)	144, 475, 1009
BspANI	GGCC	4 cut(s)	140, 161, 582, 892
BspCNI	CTCAG	2 cut(s)	124, 840
BspFNI	CGCG	2 cut(s)	216, 1021
BspLI	GGNNCC	3 cut(s)	876, 970, 1007
BspQI	GCTCTTC	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	355, 924
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	177, 881
BssMI	GATC	6 cut(s)	49, 202, 523, 709, 868, 997
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	4 cut(s)	516, 521, 745, 817
Bst6I	CTCTTC	4 cut(s)	247, 253, 361, 478
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstAUI	TGTACA	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	132, 471, 848
BstF5I	GGATG	2 cut(s)	367, 841
BstFNI	CGCG	2 cut(s)	216, 1021
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	6 cut(s)	52, 205, 526, 712, 871, 1000
BstMAI	GTCTC	3 cut(s)	60, 216, 969
BstMBI	GATC	6 cut(s)	49, 202, 523, 709, 868, 997
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 289, 785, 883, 911
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	283, 424
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	2 cut(s)	216, 1021
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	2 cut(s)	49, 868
BstYI	RGATCY	2 cut(s)	49, 868
BsuRI	GGCC	4 cut(s)	140, 161, 582, 892
BtrI	CACGTC	1 cut(s)	632
BtsCI	GGATG	2 cut(s)	367, 841
BtsI	GCAGTG	2 cut(s)	48, 604
BtsIMutI	CAGTG	3 cut(s)	48, 526, 604
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	580, 969
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	517, 666
CviAII	CATG	3 cut(s)	308, 713, 932
CviQI	GTAC	2 cut(s)	517, 666
DdeI	CTNAG	3 cut(s)	132, 471, 848
DpnI	GATC	6 cut(s)	51, 204, 525, 711, 870, 999
DpnII	GATC	6 cut(s)	49, 202, 523, 709, 868, 997
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	4 cut(s)	247, 253, 361, 478
EarI	CTCTTC	4 cut(s)	247, 253, 361, 478
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	969
Eco57I	CTGAAG	2 cut(s)	191, 688
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	311, 716, 935
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	3 cut(s)	307, 712, 931
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	78, 476, 1009
FokI	GGATG	2 cut(s)	374, 848
Fsp4HI	GCNGC	3 cut(s)	78, 476, 1009
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	78, 476, 1009
GsaI	CCCAGC	1 cut(s)	733
GsuI	CTGGAG	2 cut(s)	52, 893
HaeIII	GGCC	4 cut(s)	140, 161, 582, 892
HapII	CCGG	1 cut(s)	426
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	311, 716, 935
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	3 cut(s)	95, 125, 688
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	1 cut(s)	852
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	4 cut(s)	361, 707, 764, 849
Hpy188III	TCNNGA	4 cut(s)	113, 131, 872, 972
Hpy8I	GTNNAC	1 cut(s)	512
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	4 cut(s)	854, 963, 973, 996
HpyCH4III	ACNGT	4 cut(s)	516, 521, 745, 817
HpyCH4IV	ACGT	2 cut(s)	508, 631
HpyCH4V	TGCA	6 cut(s)	348, 383, 390, 497, 779, 929
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 289, 785, 883, 911
HpyF3I	CTNAG	3 cut(s)	132, 471, 848
HpySE526I	ACGT	2 cut(s)	508, 631
Hsp92II	CATG	3 cut(s)	311, 716, 935
HspAI	GCGC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	6 cut(s)	49, 202, 523, 709, 868, 997
LguI	GCTCTTC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	874, 1005
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	2 cut(s)	270, 1030
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	2 cut(s)	508, 631
MaeIII	GTNAC	4 cut(s)	55, 236, 632, 1015
MalI	GATC	6 cut(s)	51, 204, 525, 711, 870, 999
MbiI	CCGCTC	1 cut(s)	146
MboI	GATC	6 cut(s)	49, 202, 523, 709, 868, 997
MflI	RGATCY	2 cut(s)	49, 868
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	5 cut(s)	401, 586, 855, 947, 1028
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	663
Mox20I	TGGCCA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	1 cut(s)	735
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	285, 426
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	2 cut(s)	216, 1021
MwoI	GCNNNNNNNGC	5 cut(s)	83, 289, 785, 883, 911
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	6 cut(s)	49, 202, 523, 709, 868, 997
NlaIII	CATG	3 cut(s)	311, 716, 935
NlaIV	GGNNCC	3 cut(s)	876, 970, 1007
NmeAIII	GCCGAG	1 cut(s)	862
NmuCI	GTSAC	3 cut(s)	236, 632, 1015
NspI	RCATGY	1 cut(s)	311
PciI	ACATGT	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	361
PctI	GAATGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	95, 688
PkrI	GCNGC	3 cut(s)	79, 477, 1010
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PscI	ACATGT	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	876, 970, 1007
PspPI	GGNCC	2 cut(s)	580, 969
PsuI	RGATCY	2 cut(s)	49, 868
RsaI	GTAC	2 cut(s)	518, 667
RsaNI	GTAC	2 cut(s)	517, 666
SapI	GCTCTTC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	735
SatI	GCNGC	3 cut(s)	78, 476, 1009
Sau3AI	GATC	6 cut(s)	49, 202, 523, 709, 868, 997
Sau96I	GGNCC	2 cut(s)	580, 969
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	285, 426
SfaNI	GCATC	2 cut(s)	270, 1030
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	969
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
Sse9I	AATT	5 cut(s)	401, 586, 855, 947, 1028
SsiI	CCGC	3 cut(s)	144, 475, 1009
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	283, 424
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	4 cut(s)	516, 521, 745, 817
TaiI	ACGT	2 cut(s)	511, 634
TaqI	TCGA	4 cut(s)	114, 820, 956, 1000
TasI	AATT	5 cut(s)	401, 586, 855, 947, 1028
TatI	WGTACW	2 cut(s)	516, 665
TauI	GCSGC	2 cut(s)	478, 1011
TfiI	GAWTC	2 cut(s)	95, 688
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TscAI	CASTG	3 cut(s)	48, 526, 604
TseFI	GTSAC	3 cut(s)	236, 632, 1015
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	3 cut(s)	236, 632, 1015
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	3 cut(s)	48, 526, 604
VpaK11BI	GGWCC	1 cut(s)	969
XceI	RCATGY	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	1 cut(s)	669
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.