Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010292

Physical Location & Seq

Genomic Coordinates Forward (+)

7175329 .. 7182521

Gene Structure 7193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G038700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGTGATTTCTCAAGGGAAGCAACTGATCTGACAAGAGATGGTGAGACACAGCTGCCGCTGCAGGCGGACATGTCAATAGAAGAAGATTGGGAAGCTATTGCAGACCGTGAACCTGATGAATTACTCTCCTCACAAGTCTTGCCTGAAGTATCAAAACTCTCTTTGGAAGATACCAAAGGTCAAACCCCTAAGCGACGTGGAAGAGGAACATTTTCATATAAGAAAGATGAACTTTACAGTGATCAAATACCTGATAAGTTAATTATTGATATGCGAGAGGATGAAGATGTGTGCCATAATTTAGAGGGAGATCCAAAAATAAGAAATTCAAAATTTGGTACACAACATGTTCTTGTTCTGGCTGACTTTCCACCAAGTACCACGACAATAGAGTTGGAGAAGCTTTTTCAGGACTTTGGAGATCGTGGAGTTGTTATTCGCTGGGTCAATGATACGGTTGCACTAGCAGTTTTCCAAACACCATCAATTGCACTTGAAGCTCGTAATTGCATTCGATGTGCAATGAAAGTGCGAGTGCTTGATGAGAATGATACCCTTTTGAGCTCAATTTCACCCAAAGATCTGGAACCACCTCGGCAAAGGCCACAGACATCAGTAAGAACTGCCCAGAGGCTCATTGCGCATGGAATGGGACTGAAACTGCCTTCCACAGCCTTTGGGTCCGTGGATTTGAAGAAACAGGAAGATGATCGAAAAAGCCGCATAGTCATGAGGCAAAAGTTGAAAGATGATGCTTGGGGTACAGATGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.36

Weight (kDa)

4.93

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22120
fragaria_vesca	FvH4_3g26410 FvH4_3g26410 FvH4_3g26410 FvH4_3g26410
malus_domestica	MD14G1087800.v1.1
prunus_persica	Prupe.7G038700_v2.0.a1 Prupe.7G038700_v2.0.a1
pyrus_communis	pycom14g07790
rosa_chinensis	RchiOBHm_Chr5g0048501
rosa_laevigata	RLG00000034530
rosa_multiflora	Rmu_sc0007341.1_g000051 Rmu_sc0021801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033300
rosa_rugosa	Rorug05G0239100
rosa_samantha	Rh5AG318900 Rh5BG329000 Rh5CG355000 Rh5DG340200
rosa_wichuraiana	Rw5G029810 Rw5G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	645
AciI	CCGC	3 cut(s)	59, 68, 724
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	328, 335
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	3 cut(s)	343, 382, 766
AflIII	ACRYGT	2 cut(s)	72, 349
AgsI	TTSAA	4 cut(s)	333, 500, 697, 748
AjiI	CACGTC	1 cut(s)	200
AluBI	AGCT	5 cut(s)	55, 98, 406, 503, 567
AluI	AGCT	5 cut(s)	55, 98, 406, 503, 567
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	605
ApeKI	GCWGC	2 cut(s)	55, 61
ApoI	RAATTY	2 cut(s)	328, 335
Asp700I	GAANNNNTTC	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	646
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	2 cut(s)	56, 567
AvaII	GGWCC	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	2 cut(s)	42, 48
BccI	CCATC	2 cut(s)	35, 493
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	4 cut(s)	56, 59, 62, 724
BlsI	GCNGC	4 cut(s)	57, 60, 63, 725
Bme18I	GGWCC	1 cut(s)	684
BmgBI	CACGTC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	2 cut(s)	591, 685
BmsI	GCATC	1 cut(s)	745
Bpu10I	CCTNAGC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	596, 687
Bse3DI	GCAATG	2 cut(s)	531, 639
BseDI	CCNNGG	2 cut(s)	596, 687
BseGI	GGATG	1 cut(s)	289
BseMI	GCAATG	2 cut(s)	531, 639
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	42, 48
BseYI	CCCAGC	1 cut(s)	444
BshFI	GGCC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	669
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	669
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	607
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp143I	GATC	6 cut(s)	28, 244, 313, 424, 583, 712
BspACI	CCGC	3 cut(s)	59, 68, 724
BspANI	GGCC	1 cut(s)	607
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	2 cut(s)	591, 685
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	1 cut(s)	308
BsrDI	GCAATG	2 cut(s)	531, 639
BssECI	CCNNGG	2 cut(s)	596, 687
BssMI	GATC	6 cut(s)	28, 244, 313, 424, 583, 712
Bst4CI	ACNGT	3 cut(s)	110, 242, 460
Bst6I	CTCTTC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	6 cut(s)	31, 247, 316, 427, 586, 715
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	6 cut(s)	28, 244, 313, 424, 583, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 500, 643
BstNSI	RCATGY	2 cut(s)	76, 353
BstSFI	CTRYAG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	42, 48
BstX2I	RGATCY	2 cut(s)	313, 583
BstXI	CCANNNNNNTGG	1 cut(s)	586
BstYI	RGATCY	2 cut(s)	313, 583
BsuRI	GGCC	1 cut(s)	607
BtgI	CCRYGG	1 cut(s)	687
BtrI	CACGTC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	66
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	684
Csp6I	GTAC	3 cut(s)	342, 381, 765
CspCI	CAANNNNNGTGG	2 cut(s)	661, 696
CviAII	CATG	4 cut(s)	73, 350, 647, 733
CviQI	GTAC	3 cut(s)	342, 381, 765
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	6 cut(s)	30, 246, 315, 426, 585, 714
DpnII	GATC	6 cut(s)	28, 244, 313, 424, 583, 712
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	684
Eco53kI	GAGCTC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	569
FaeI	CATG	4 cut(s)	76, 353, 650, 736
FaiI	YATR	9 cut(s)	74, 220, 222, 275, 300, 351, 648, 728, 734
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	4 cut(s)	72, 349, 646, 732
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	56, 59, 62, 724
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	4 cut(s)	56, 59, 62, 724
FspBI	CTAG	1 cut(s)	467
FspI	TGCGCA	1 cut(s)	645
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	4 cut(s)	56, 59, 62, 724
GsaI	CCCAGC	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	607
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	4 cut(s)	76, 353, 650, 736
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HindIII	AAGCTT	1 cut(s)	404
HphI	GGTGA	2 cut(s)	56, 567
Hpy166II	GTNNAC	2 cut(s)	113, 344
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	3 cut(s)	413, 587, 733
Hpy8I	GTNNAC	2 cut(s)	113, 344
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	678
HpyCH4III	ACNGT	3 cut(s)	110, 242, 460
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	6 cut(s)	64, 104, 464, 494, 513, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 500, 643
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	4 cut(s)	76, 353, 650, 736
HspAI	GCGC	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	6 cut(s)	28, 244, 313, 424, 583, 712
Lsp1109I	GCAGC	2 cut(s)	42, 48
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	199
MalI	GATC	6 cut(s)	30, 246, 315, 426, 585, 714
MboI	GATC	6 cut(s)	28, 244, 313, 424, 583, 712
MboII	GAAGA	7 cut(s)	95, 98, 182, 216, 299, 709, 719
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	313, 583
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	8 cut(s)	122, 264, 301, 328, 335, 489, 508, 570
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	7 cut(s)	142, 200, 274, 301, 606, 627, 729
MroXI	GAANNNNTTC	1 cut(s)	214
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	731
MspA1I	CMGCKG	2 cut(s)	55, 61
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	61, 500, 643
NdeII	GATC	6 cut(s)	28, 244, 313, 424, 583, 712
NlaIII	CATG	4 cut(s)	76, 353, 650, 736
NlaIV	GGNNCC	2 cut(s)	591, 685
NmeAIII	GCCGAG	1 cut(s)	577
NsbI	TGCGCA	1 cut(s)	645
NspI	RCATGY	2 cut(s)	76, 353
PagI	TCATGA	1 cut(s)	732
PciI	ACATGT	2 cut(s)	72, 349
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	214
PkrI	GCNGC	4 cut(s)	57, 60, 63, 725
PscI	ACATGT	2 cut(s)	72, 349
Psp124BI	GAGCTC	1 cut(s)	569
PspFI	CCCAGC	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	591, 685
PspPI	GGNCC	1 cut(s)	684
PstI	CTGCAG	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	313, 583
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	3 cut(s)	343, 382, 766
RsaNI	GTAC	3 cut(s)	342, 381, 765
RseI	CAYNNNNRTG	1 cut(s)	731
SacI	GAGCTC	1 cut(s)	569
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	4 cut(s)	56, 59, 62, 724
Sau3AI	GATC	6 cut(s)	28, 244, 313, 424, 583, 712
Sau96I	GGNCC	1 cut(s)	684
SduI	GDGCHC	1 cut(s)	569
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	8 cut(s)	122, 264, 301, 328, 335, 489, 508, 570
SsiI	CCGC	3 cut(s)	59, 68, 724
SspMI	CTAG	1 cut(s)	467
SstI	GAGCTC	1 cut(s)	569
TaaI	ACNGT	3 cut(s)	110, 242, 460
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	2 cut(s)	517, 715
TasI	AATT	8 cut(s)	122, 264, 301, 328, 335, 489, 508, 570
TauI	GCSGC	2 cut(s)	61, 726
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	2 cut(s)	55, 61
TspDTI	ATGAA	5 cut(s)	135, 207, 246, 300, 542
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	684
XapI	RAATTY	2 cut(s)	328, 335
XceI	RCATGY	2 cut(s)	76, 353
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.