Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010292

Physical Location & Seq

Genomic Coordinates Forward (+)

46191649 .. 46197818

Gene Structure 6170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCAGAGCAGAAGAAGAAGACAACTGGAGTGAGGCAGTGGAAGATCTTGTAACAGCAGGAGACACCGACGGAGCCATAGCTCTTTTGGAATCGGTAATCTCCAATCTCGAAAACAAAGACTCTCCTGAGTTGGCCTCTGCTCTCTGCGACTTGGCCAAGCTCTACTCCTCCAAAGGCTTCTCTCTCAAAGCTGACGACCTTCAGTCTCGCGCTTCCGCCATCAAGCTTCGTCACTCTTCCTCTTCTGGTGTTGCTACAGAGAAGCAGAGCTTGATGCCTGGAAAGAATTCAACAGATGGACATGTTGAAAACTCAACGAAATCGCAGGGTTCTTCTTCTTGCAATGGGTCTTCGGATGATGATTGGGAAGCTATTGCAGACCGCACACCTGATGAATTACTCTCCTCACAATCTTTGCCCGGAGTATCAAAACTTTCTTTGGAAGATACCAAAGTTCAAACCCCTAAGCGGCGTGGAAGAGGAACATTTGCATACAAGAAACGTGAACTGTACAGTGATCAAATATCTAATAAGATTGTAGTTGATAATGATAGCTTGGAGGAAGAAAATGAGGGCCATAATTTAGAGGGCAGTGAAGAAACAAGAAACTCAAAATATGGCACACGTCACATTCTTGTTTTAGCTGACTGTCCACCAAGTACTAGGACAATAGAGTTGGAGAATCTTTTTGAGGACTTCAGAGATCATGGAGTTGTTATTCGCTGGGTTAATGATACGGTTGCCCTTGCCGTTTTCAGAACACCAGCGATTGGTAAGTGCAATTATTTAGTTTTTGAAGTTATTACTTTTGGCTTTTGTGAGAATACATATAGGGTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

30.91

Weight (kDa)

4.8

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22120
fragaria_vesca	FvH4_3g26410 FvH4_3g26410 FvH4_3g26410 FvH4_3g26410
malus_domestica	MD14G1087800.v1.1
prunus_persica	Prupe.7G038700_v2.0.a1 Prupe.7G038700_v2.0.a1
pyrus_communis	pycom14g07790
rosa_chinensis	RchiOBHm_Chr5g0048501
rosa_laevigata	RLG00000034530
rosa_multiflora	Rmu_sc0007341.1_g000051 Rmu_sc0021801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033300
rosa_rugosa	Rorug05G0239100
rosa_samantha	Rh5AG318900 Rh5BG329000 Rh5CG355000 Rh5DG340200
rosa_wichuraiana	Rw5G029810 Rw5G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	773
AccII	CGCG	1 cut(s)	213
AciI	CCGC	3 cut(s)	219, 385, 472
AcoI	YGGCCR	2 cut(s)	3, 156
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	2 cut(s)	188, 685
AfaI	GTAC	2 cut(s)	515, 664
AfiI	CCNNNNNNNGG	2 cut(s)	471, 773
AflIII	ACRYGT	2 cut(s)	304, 626
AgsI	TTSAA	4 cut(s)	294, 311, 461, 800
AhdI	GACNNNNNGTC	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	8 cut(s)	83, 163, 194, 229, 273, 374, 558, 647
AluI	AGCT	8 cut(s)	83, 163, 194, 229, 273, 374, 558, 647
Alw26I	GTCTC	2 cut(s)	57, 213
AoxI	GGCC	4 cut(s)	3, 135, 156, 577
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	577
AsuC2I	CCSGG	1 cut(s)	423
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BalI	TGGCCA	2 cut(s)	5, 158
BbsI	GAAGAC	2 cut(s)	27, 345
BccI	CCATC	2 cut(s)	230, 293
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	2 cut(s)	57, 213
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	258
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	1 cut(s)	473
BlsI	GCNGC	1 cut(s)	474
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	2 cut(s)	282, 423
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	282, 423
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	27, 345
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 773
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	471, 773
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	2 cut(s)	160, 397
BseYI	CCCAGC	1 cut(s)	726
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	5, 137, 158, 579
BsiSI	CCGG	1 cut(s)	423
BslI	CCNNNNNNNGG	2 cut(s)	471, 773
BsmAI	GTCTC	2 cut(s)	57, 213
BsnI	GGCC	4 cut(s)	5, 137, 158, 579
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	3 cut(s)	46, 520, 706
BspACI	CCGC	3 cut(s)	219, 385, 472
BspANI	GGCC	4 cut(s)	5, 137, 158, 579
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	3 cut(s)	46, 520, 706
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	4 cut(s)	513, 518, 653, 742
Bst6I	CTCTTC	3 cut(s)	244, 250, 475
BstAUI	TGTACA	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	129, 468
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	3 cut(s)	49, 523, 709
BstMAI	GTCTC	2 cut(s)	57, 213
BstMBI	GATC	3 cut(s)	46, 520, 706
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	280, 421
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	213
BstV2I	GAAGAC	2 cut(s)	27, 345
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	4 cut(s)	5, 137, 158, 579
BtrI	CACGTC	1 cut(s)	629
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	2 cut(s)	45, 601
BtsIMutI	CAGTG	3 cut(s)	45, 523, 601
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	514, 663
CviAII	CATG	2 cut(s)	305, 710
CviQI	GTAC	2 cut(s)	514, 663
DdeI	CTNAG	2 cut(s)	129, 468
DpnI	GATC	3 cut(s)	48, 522, 708
DpnII	GATC	3 cut(s)	46, 520, 706
DriI	GACNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	2 cut(s)	3, 156
Eam1104I	CTCTTC	3 cut(s)	244, 250, 475
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	3 cut(s)	244, 250, 475
EciI	GGCGGA	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	188, 685
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	2 cut(s)	308, 713
FaiI	YATR	8 cut(s)	80, 306, 496, 582, 621, 711, 832, 834
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	2 cut(s)	304, 709
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	1 cut(s)	666
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	473
GsaI	CCCAGC	1 cut(s)	730
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	4 cut(s)	5, 137, 158, 579
HapII	CCGG	1 cut(s)	423
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	308, 713
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	92, 122, 685
HpaII	CCGG	1 cut(s)	423
Hpy166II	GTNNAC	2 cut(s)	509, 656
Hpy188I	TCNGA	3 cut(s)	358, 704, 761
Hpy188III	TCNNGA	2 cut(s)	110, 128
Hpy8I	GTNNAC	2 cut(s)	509, 656
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	4 cut(s)	513, 518, 653, 742
HpyCH4IV	ACGT	2 cut(s)	505, 628
HpyCH4V	TGCA	4 cut(s)	345, 380, 494, 783
HpyF3I	CTNAG	2 cut(s)	129, 468
HpySE526I	ACGT	2 cut(s)	505, 628
Hsp92II	CATG	2 cut(s)	308, 713
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	46, 520, 706
LmnI	GCTCC	1 cut(s)	74
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	2 cut(s)	505, 628
MaeIII	GTNAC	3 cut(s)	52, 233, 629
MalI	GATC	3 cut(s)	48, 522, 708
MboI	GATC	3 cut(s)	46, 520, 706
MflI	RGATCY	1 cut(s)	46
MlsI	TGGCCA	2 cut(s)	5, 158
MluCI	AATT	4 cut(s)	289, 398, 583, 784
MluNI	TGGCCA	2 cut(s)	5, 158
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	660
Mox20I	TGGCCA	2 cut(s)	5, 158
MroXI	GAANNNNTTC	1 cut(s)	289
MscI	TGGCCA	2 cut(s)	5, 158
MseI	TTAA	2 cut(s)	732, 840
Msp20I	TGGCCA	2 cut(s)	5, 158
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	2 cut(s)	282, 423
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	213
NciI	CCSGG	1 cut(s)	423
NdeII	GATC	3 cut(s)	46, 520, 706
NlaIII	CATG	2 cut(s)	308, 713
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	233, 629
NspI	RCATGY	1 cut(s)	308
PciI	ACATGT	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	92, 685
PflMI	CCANNNNNTGG	1 cut(s)	773
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	2 cut(s)	515, 664
RsaNI	GTAC	2 cut(s)	514, 663
SaqAI	TTAA	2 cut(s)	732, 840
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	3 cut(s)	46, 520, 706
Sau96I	GGNCC	1 cut(s)	577
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	282, 423
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	289, 398, 583, 784
SsiI	CCGC	3 cut(s)	219, 385, 472
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	280, 421
TaaI	ACNGT	4 cut(s)	513, 518, 653, 742
TaiI	ACGT	2 cut(s)	508, 631
TaqI	TCGA	1 cut(s)	111
TasI	AATT	4 cut(s)	289, 398, 583, 784
TatI	WGTACW	2 cut(s)	513, 662
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	92, 685
Tru1I	TTAA	2 cut(s)	732, 840
Tru9I	TTAA	2 cut(s)	732, 840
TscAI	CASTG	3 cut(s)	45, 523, 601
TseFI	GTSAC	2 cut(s)	233, 629
Tsp45I	GTSAC	2 cut(s)	233, 629
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	3 cut(s)	45, 523, 601
Van91I	CCANNNNNTGG	1 cut(s)	773
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	1 cut(s)	666
ZrmI	AGTACT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.