Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010292

Physical Location & Seq

Genomic Coordinates Reverse (-)

10971960 .. 10976840

Gene Structure 4881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1087800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCGAGACGGAGCTACCGCTGCATTCAGACACATTGGGAATCTATTGCAGATCACACACCTGATGAATTGCTCTCGTCACAATCTTTGCCTGAAGTATCAAAACTATCTTTGGAAGATACCAAAGCTCAGACCCCTAAGCGACGTGGAAGAGGAACATTTTCATATAAGAAACATGAACTTTACAGTGATCAAGTATCTGATAAGTTAATTGTTGATAATGATACACCAGACGATGAAAATGTGTCCCATAATTTGGAGGGGGATCCAAAAGTAATAAAATCAAAATATGGAACACAACATATTCTTGTTCTGGCTGACTTTCCACCAAGCACTACGACAATAGAGTTGGAGAAGCTTTTTGTGAATATTAGAGATCCTGGAGTTATTATTCGCTGGGTCAATGATACAGTTGCTCTTGCAGTTTTCCAAACACCGTCAATTGCACTCGAAGCTCTTAGCTGCGTTCGATGTTCTATGACAGTGCGAGTGCTTGAAGAGAATGATTTCCTTTTGAGCTCAATTTCACCGAAAGATCTGGAACCTCCTCGACAAAGGCCACAGACATCAGCTAGAACTGCTCAGAGGCTCATTGCTCATGGAATGGGACTGAAACTACCTTCCACGGCCTTTGGGTCAAATGATTTAAAGAAACAGGAAGATGATCGAAAGAGCCGCATAGTCATGAGGCAAAAGTTGAAAGATGATGCTTGGGGTACAGATGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.49

Weight (kDa)

6.32

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22120
fragaria_vesca	FvH4_3g26410 FvH4_3g26410 FvH4_3g26410 FvH4_3g26410
malus_domestica	MD14G1087800.v1.1
prunus_persica	Prupe.7G038700_v2.0.a1 Prupe.7G038700_v2.0.a1
pyrus_communis	pycom14g07790
rosa_chinensis	RchiOBHm_Chr5g0048501
rosa_laevigata	RLG00000034530
rosa_multiflora	Rmu_sc0007341.1_g000051 Rmu_sc0021801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033300
rosa_rugosa	Rorug05G0239100
rosa_samantha	Rh5AG318900 Rh5BG329000 Rh5CG355000 Rh5DG340200
rosa_wichuraiana	Rw5G029810 Rw5G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	256
AciI	CCGC	2 cut(s)	19, 676
AclWI	GGATC	3 cut(s)	260, 273, 371
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	497, 700
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	7 cut(s)	15, 128, 358, 455, 462, 519, 572
AluI	AGCT	7 cut(s)	15, 128, 358, 455, 462, 519, 572
Alw21I	GWGCWC	1 cut(s)	521
AlwI	GGATC	3 cut(s)	260, 273, 371
AoxI	GGCC	2 cut(s)	557, 627
ApeKI	GCWGC	2 cut(s)	21, 462
Asp700I	GAANNNNTTC	2 cut(s)	160, 506
AsuHPI	GGTGA	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	8, 449
BceAI	ACGGC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	190
BfaI	CTAG	1 cut(s)	573
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	3 cut(s)	22, 463, 676
BlsI	GCNGC	3 cut(s)	23, 464, 677
Bme1390I	CCNGG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	267, 543
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	697
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	624
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	2 cut(s)	143, 596
BseRI	GAGGAG	1 cut(s)	537
BseXI	GCAGC	2 cut(s)	8, 449
BseYI	CCCAGC	1 cut(s)	396
BshFI	GGCC	2 cut(s)	559, 629
BsiHKAI	GWGCWC	1 cut(s)	521
BslFI	GGGAC	2 cut(s)	232, 621
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	232, 621
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	559, 629
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	6 cut(s)	52, 190, 265, 376, 535, 664
BspACI	CCGC	2 cut(s)	19, 676
BspANI	GGCC	2 cut(s)	559, 629
BspCNI	CTCAG	2 cut(s)	142, 595
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	2 cut(s)	267, 543
BspPI	GGATC	3 cut(s)	260, 273, 371
BsrDI	GCAATG	1 cut(s)	591
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	6 cut(s)	52, 190, 265, 376, 535, 664
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	4 cut(s)	188, 412, 438, 484
Bst6I	CTCTTC	2 cut(s)	145, 492
BstDEI	CTNAG	4 cut(s)	129, 138, 458, 582
BstDSI	CCRYGG	1 cut(s)	624
BstKTI	GATC	6 cut(s)	55, 193, 268, 379, 538, 667
BstMBI	GATC	6 cut(s)	52, 190, 265, 376, 535, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 452, 578
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	8, 449
BstX2I	RGATCY	3 cut(s)	265, 376, 535
BstYI	RGATCY	3 cut(s)	265, 376, 535
BsuRI	GGCC	2 cut(s)	559, 629
BtgI	CCRYGG	1 cut(s)	624
BtrI	CACGTC	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	193, 489
CciI	TCATGA	1 cut(s)	684
Csp6I	GTAC	1 cut(s)	717
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	3 cut(s)	176, 599, 685
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	4 cut(s)	129, 138, 458, 582
DpnI	GATC	6 cut(s)	54, 192, 267, 378, 537, 666
DpnII	GATC	6 cut(s)	52, 190, 265, 376, 535, 664
DraI	TTTAAA	1 cut(s)	648
Eam1104I	CTCTTC	2 cut(s)	145, 492
EarI	CTCTTC	2 cut(s)	145, 492
Ecl136II	GAGCTC	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	519
Eco57I	CTGAAG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	3 cut(s)	179, 602, 688
FaqI	GGGAC	2 cut(s)	232, 621
FatI	CATG	3 cut(s)	175, 598, 684
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	22, 463, 676
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	3 cut(s)	22, 463, 676
FspBI	CTAG	1 cut(s)	573
GluI	GCNGC	3 cut(s)	22, 463, 676
GsaI	CCCAGC	1 cut(s)	400
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	559, 629
Hin1II	CATG	3 cut(s)	179, 602, 688
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	1 cut(s)	41
HphI	GGTGA	1 cut(s)	519
Hpy188I	TCNGA	4 cut(s)	30, 132, 202, 585
Hpy188III	TCNNGA	3 cut(s)	6, 539, 685
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	630
HpyCH4III	ACNGT	4 cut(s)	188, 412, 438, 484
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	24, 50, 422, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 452, 578
HpyF3I	CTNAG	4 cut(s)	129, 138, 458, 582
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	179, 602, 688
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	52, 190, 265, 376, 535, 664
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	9 cut(s)	75, 105, 243, 299, 366, 382, 393, 524, 641
Lsp1109I	GCAGC	2 cut(s)	8, 449
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	6 cut(s)	54, 192, 267, 378, 537, 666
MboI	GATC	6 cut(s)	52, 190, 265, 376, 535, 664
MboII	GAAGA	4 cut(s)	128, 162, 509, 671
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	3 cut(s)	265, 376, 535
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	6 cut(s)	68, 210, 253, 441, 522, 727
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	6 cut(s)	146, 253, 555, 558, 579, 681
MroXI	GAANNNNTTC	2 cut(s)	160, 506
MseI	TTAA	3 cut(s)	209, 647, 730
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	21, 452, 578
NdeII	GATC	6 cut(s)	52, 190, 265, 376, 535, 664
NlaIII	CATG	3 cut(s)	179, 602, 688
NlaIV	GGNNCC	2 cut(s)	267, 543
NmuCI	GTSAC	1 cut(s)	78
PagI	TCATGA	1 cut(s)	684
PctI	GAATGC	1 cut(s)	24
PdmI	GAANNNNTTC	2 cut(s)	160, 506
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	23, 464, 677
Psp124BI	GAGCTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	267, 543
PsuI	RGATCY	3 cut(s)	265, 376, 535
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
RseI	CAYNNNNRTG	1 cut(s)	683
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	209, 647, 730
SatI	GCNGC	3 cut(s)	22, 463, 676
Sau3AI	GATC	6 cut(s)	52, 190, 265, 376, 535, 664
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	683
Sse9I	AATT	6 cut(s)	68, 210, 253, 441, 522, 727
SsiI	CCGC	2 cut(s)	19, 676
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	573
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	188, 412, 438, 484
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	5 cut(s)	5, 450, 469, 550, 667
TasI	AATT	6 cut(s)	68, 210, 253, 441, 522, 727
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	209, 647, 730
Tru9I	TTAA	3 cut(s)	209, 647, 730
TscAI	CASTG	2 cut(s)	193, 489
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	2 cut(s)	21, 462
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	4 cut(s)	81, 153, 192, 252
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	2 cut(s)	193, 489
Van91I	CCANNNNNTGG	1 cut(s)	256
XmnI	GAANNNNTTC	2 cut(s)	160, 506
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.