Rmu_sc0021801.1_g000001

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021801.1
OG0010292
Physical Location & Seq
Reverse (-)
1 .. 1294
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021801.1_g000001.1.cds

Sequence Viewer

Length: 337 bp
atgcctggaaagcattcaacagatggacatgttgaaaactcaacgaaatcgcagggttcttcttcttgcaatgggtcttcggatgatgattgggaagctattgcagaccgcacacctgatgaattactctcctcacaatctttgcccggagtatcaaaactttctttggaagataccaaagttcaaacccctaagcggcgtggaagaggaacatttgcatacaagaaacgtgaactgtacagtgatcaaatatctaataagattgtagttgataatgatagcttggaggaagaaaatgagggccataatttagagggcagtgaagaaacaagaaact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.34

Weight (kDa)

4.81

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 109, 196
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 3 cut(s) 18, 35, 185
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 2 cut(s) 98, 282
AluI AGCT 2 cut(s) 98, 282
AoxI GGCC 1 cut(s) 301
Asp700I GAANNNNTTC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 147
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BbsI GAAGAC 1 cut(s) 69
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 6
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 147
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 2 cut(s) 6, 147
BmgT120I GGNCC 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 6, 147
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 121
BshFI GGCC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 195
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 2 cut(s) 109, 196
BspANI GGCC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 76
BsrGI TGTACA 1 cut(s) 237
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 237, 242
Bst6I CTCTTC 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 4, 145
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 247, 325
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 29
CviJI RGCY 3 cut(s) 98, 282, 303
CviKI_1 RGCY 3 cut(s) 98, 282, 303
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 4
FaeI CATG 1 cut(s) 32
FaiI YATR 3 cut(s) 30, 220, 306
FatI CATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 197
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 147
Hin1II CATG 1 cut(s) 32
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 237, 242
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 69, 104, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 4 cut(s) 18, 38, 129, 160
MaeII ACGT 1 cut(s) 229
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 7 cut(s) 51, 54, 69, 182, 216, 302, 335
MluCI AATT 2 cut(s) 122, 307
MnlI CCTC 5 cut(s) 142, 200, 280, 292, 307
MroXI GAANNNNTTC 1 cut(s) 13
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 6, 147
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 147
NdeII GATC 1 cut(s) 244
NlaIII CATG 1 cut(s) 32
NspI RCATGY 1 cut(s) 32
PciI ACATGT 1 cut(s) 28
PctI GAATGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 198
PscI ACATGT 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspPI GGNCC 1 cut(s) 301
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 6, 147
SetI ASST 4 cut(s) 100, 118, 232, 284
Sse9I AATT 2 cut(s) 122, 307
SsiI CCGC 2 cut(s) 109, 196
StyD4I CCNGG 2 cut(s) 4, 145
TaaI ACNGT 2 cut(s) 237, 242
TaiI ACGT 1 cut(s) 232
TasI AATT 2 cut(s) 122, 307
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 199
TscAI CASTG 2 cut(s) 247, 325
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 2 cut(s) 247, 325
XceI RCATGY 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.