Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010292

Physical Location & Seq

Genomic Coordinates Forward (+)

44418774 .. 44425696

Gene Structure 6923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034530

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGAGAGCAGAAGAAGAAGACAACTGGAGTGAGGCAGTGGAAGATCTTGTAACAGCAGGAGACACCGACGCAGCCATAGCTCTTTTGGAATCGGTAATTTCCAATCTCGAAAACAAAGACTCTCCTGAGTTGGCCTCTGCTCTCTGCGACTTGGCCAAGCTCTACTCCTCCAAAGATTGGGAAGCTATTGCAGACCGCACACCTGATGAATTACTCTCCTCACAATCTTTGCCCGGAGTATCAAAACTTTCTTTGGAAGATGCCAAAGTTCAAACCCCTAAGCGGCGTGGAAGAGGAACATTTGCATACAAGAAACGTGAATTGTACAGTGATCAAATATCTAATAAGATAGTAGTTGATAATGATAGCTTGGAGGAAGAAAATGAGGGCCATAATTTAGAGGGCGGTGAAGAAACAAGAAACTCAAAATATGGCACACGTCACATTCTTGTTTTAGCTGACTTTCCACCAAGTACTAGGACAATAGAGTTGGAGAATCTTTTTGAGGACTTCAGAGATCGTGGAGTTGTTATTCGCTGGGTTAATGATACAATTGCCCTTGCCGTTTTCAGAACACCAGCGATTGCACTTGAGGCTCGTAGTCATATTCAATGTTCTATGACAGTTCGAGTGCTTGATGAGGATGATACCCTTCTGAGTTCAATTTCACCAAAAGATCTGGAGCCTCCTCGGCAAAGGCCACAAACATCAGCAAGAACTGCTCAGAGGCTCATTGCGCATGGAATGGGACTGAAATTACCTTCAACTGCCTTCGGGTCCAGAGACTTGAAGAAACAGGAAAATGATCGAAAGAGCCGCATAGTCACGAGGCAAAAATTGAAAGATGATGCTTGGGGTGGGGACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.41

Weight (kDa)

4.97

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22120
fragaria_vesca	FvH4_3g26410 FvH4_3g26410 FvH4_3g26410 FvH4_3g26410
malus_domestica	MD14G1087800.v1.1
prunus_persica	Prupe.7G038700_v2.0.a1 Prupe.7G038700_v2.0.a1
pyrus_communis	pycom14g07790
rosa_chinensis	RchiOBHm_Chr5g0048501
rosa_laevigata	RLG00000034530
rosa_multiflora	Rmu_sc0007341.1_g000051 Rmu_sc0021801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033300
rosa_rugosa	Rorug05G0239100
rosa_samantha	Rh5AG318900 Rh5BG329000 Rh5CG355000 Rh5DG340200
rosa_wichuraiana	Rw5G029810 Rw5G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	741
AccB7I	CCANNNNNTGG	1 cut(s)	180
AciI	CCGC	4 cut(s)	199, 286, 408, 820
AcoI	YGGCCR	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	499
AfaI	GTAC	2 cut(s)	329, 478
AfiI	CCNNNNNNNGG	2 cut(s)	180, 285
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	6 cut(s)	275, 614, 666, 768, 793, 844
AjiI	CACGTC	1 cut(s)	443
AluBI	AGCT	5 cut(s)	83, 163, 188, 372, 461
AluI	AGCT	5 cut(s)	83, 163, 188, 372, 461
Alw26I	GTCTC	2 cut(s)	57, 780
AoxI	GGCC	4 cut(s)	135, 156, 391, 701
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	391, 780
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	422, 663
AvaII	GGWCC	1 cut(s)	780
BalI	TGGCCA	1 cut(s)	158
BauI	CACGAG	1 cut(s)	829
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	551
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	57, 780
BfaI	CTAG	1 cut(s)	480
BglI	GCCNNNNNGGC	1 cut(s)	694
BglII	AGATCT	2 cut(s)	46, 679
BisI	GCNGC	3 cut(s)	75, 287, 820
BlsI	GCNGC	3 cut(s)	76, 288, 821
BmcAI	AGTACT	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	780
BmgBI	CACGTC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	391, 780
BmiI	GGNNCC	2 cut(s)	687, 781
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	253, 841
BpiI	GAAGAC	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	2 cut(s)	49, 704
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 285
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	735
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	180, 285
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	120, 650, 740
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	3 cut(s)	160, 211, 681
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	540
BshFI	GGCC	4 cut(s)	137, 158, 393, 703
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	2 cut(s)	180, 285
BsmAI	GTCTC	2 cut(s)	57, 780
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	4 cut(s)	137, 158, 393, 703
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	46, 334, 520, 679, 808
BspACI	CCGC	4 cut(s)	199, 286, 408, 820
BspANI	GGCC	4 cut(s)	137, 158, 393, 703
BspCNI	CTCAG	3 cut(s)	121, 651, 739
BspLI	GGNNCC	2 cut(s)	687, 781
BsrDI	GCAATG	1 cut(s)	735
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	5 cut(s)	46, 334, 520, 679, 808
BssSI	CACGAG	1 cut(s)	829
Bst2BI	CACGAG	1 cut(s)	829
Bst4CI	ACNGT	2 cut(s)	332, 628
Bst6I	CTCTTC	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstAUI	TGTACA	1 cut(s)	327
BstDEI	CTNAG	4 cut(s)	129, 282, 659, 726
BstF5I	GGATG	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	5 cut(s)	49, 337, 523, 682, 811
BstMAI	GTCTC	2 cut(s)	57, 780
BstMBI	GATC	5 cut(s)	46, 334, 520, 679, 808
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 596, 694, 722, 739
BstSCI	CCNGG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	46, 679
BstYI	RGATCY	2 cut(s)	46, 679
BsuRI	GGCC	4 cut(s)	137, 158, 393, 703
BtrI	CACGTC	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	652
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	45, 337
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	2 cut(s)	391, 780
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	328, 477
CviAII	CATG	1 cut(s)	743
CviQI	GTAC	2 cut(s)	328, 477
DdeI	CTNAG	4 cut(s)	129, 282, 659, 726
DpnI	GATC	5 cut(s)	48, 336, 522, 681, 810
DpnII	GATC	5 cut(s)	46, 334, 520, 679, 808
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	780
Eco57I	CTGAAG	1 cut(s)	499
FaeI	CATG	1 cut(s)	746
FaiI	YATR	8 cut(s)	80, 310, 396, 435, 609, 623, 744, 824
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	75, 287, 820
FokI	GGATG	1 cut(s)	659
Fsp4HI	GCNGC	3 cut(s)	75, 287, 820
FspBI	CTAG	1 cut(s)	480
FspI	TGCGCA	1 cut(s)	741
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	3 cut(s)	75, 287, 820
GsaI	CCCAGC	1 cut(s)	544
GsuI	CTGGAG	2 cut(s)	49, 704
HaeIII	GGCC	4 cut(s)	137, 158, 393, 703
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	1 cut(s)	746
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HinfI	GANTC	3 cut(s)	92, 122, 499
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	422, 663
Hpy188I	TCNGA	4 cut(s)	518, 575, 660, 729
Hpy188III	TCNNGA	5 cut(s)	110, 128, 683, 783, 829
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	665, 774, 784
HpyCH4III	ACNGT	2 cut(s)	332, 628
HpyCH4IV	ACGT	2 cut(s)	319, 442
HpyCH4V	TGCA	3 cut(s)	194, 308, 590
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 596, 694, 722, 739
HpyF3I	CTNAG	4 cut(s)	129, 282, 659, 726
HpySE526I	ACGT	2 cut(s)	319, 442
Hsp92II	CATG	1 cut(s)	746
HspAI	GCGC	1 cut(s)	740
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	46, 334, 520, 679, 808
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	2 cut(s)	253, 841
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	319, 442
MaeIII	GTNAC	3 cut(s)	52, 443, 826
MalI	GATC	5 cut(s)	48, 336, 522, 681, 810
MboI	GATC	5 cut(s)	46, 334, 520, 679, 808
MboII	GAAGA	9 cut(s)	26, 29, 32, 56, 272, 306, 392, 425, 805
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	2 cut(s)	46, 679
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	8 cut(s)	99, 212, 323, 397, 555, 666, 758, 839
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	474
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	555
MwoI	GCNNNNNNNGC	5 cut(s)	80, 596, 694, 722, 739
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	5 cut(s)	46, 334, 520, 679, 808
NlaIII	CATG	1 cut(s)	746
NlaIV	GGNNCC	2 cut(s)	687, 781
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	2 cut(s)	443, 826
NsbI	TGCGCA	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	92, 499
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	76, 288, 821
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	687, 781
PspPI	GGNCC	2 cut(s)	391, 780
PsuI	RGATCY	2 cut(s)	46, 679
RsaI	GTAC	2 cut(s)	329, 478
RsaNI	GTAC	2 cut(s)	328, 477
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	3 cut(s)	75, 287, 820
Sau3AI	GATC	5 cut(s)	46, 334, 520, 679, 808
Sau96I	GGNCC	2 cut(s)	391, 780
ScaI	AGTACT	1 cut(s)	478
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	9 cut(s)	85, 165, 190, 208, 322, 374, 445, 463, 766
SfaNI	GCATC	2 cut(s)	253, 841
SinI	GGWCC	1 cut(s)	780
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	8 cut(s)	99, 212, 323, 397, 555, 666, 758, 839
SsiI	CCGC	4 cut(s)	199, 286, 408, 820
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	332, 628
TaiI	ACGT	2 cut(s)	322, 445
TaqI	TCGA	3 cut(s)	111, 631, 811
TasI	AATT	8 cut(s)	99, 212, 323, 397, 555, 666, 758, 839
TatI	WGTACW	2 cut(s)	327, 476
TauI	GCSGC	2 cut(s)	289, 822
TfiI	GAWTC	2 cut(s)	92, 499
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	2 cut(s)	45, 337
TseFI	GTSAC	2 cut(s)	443, 826
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	443, 826
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	45, 337
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	780
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.