Rw5G029940

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010292
Physical Location & Seq
Forward (+)
46871001 .. 46877295
6295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G029940.1

Sequence Viewer

Length: 1059 bp
ATGGCGAGAGCAGAAGAAGAAGACAACTGGAGCGAGGCAGTGGAAGATCTTCTAACAGCAGGAGACACCGACGGAGCCATAGCTCTTTTGGAATCGGTAATCTCCAATCTCGAAAACAAAGACTCTCCTGAGTTGGCCTCTGCTCTCTGCGACTTGGCCAAGCTCTACTCCTCCAAAGGCTTCTCTCTCAAAGCTGACGACCTTCAGTCTCGCGCTTCCGTCATCAAGCTTCGTCACTCTTCCTCTTCTGGTGTTGCTACAGAGAAGCAGAGCTTGATGCCTGGAAAGCATTCAACAGATGGACATGTTGAAAACTCAACGAAATCGCAGGGTTCTTCTTCTTGCAATGGGTCTTCGGATGATGATTGGGAAGCTATTGCAGACCGCACACCTGATGAATTACTCTCCTCACAATCTTTGCCCGGAGTATCAAAACTTTCTTTGGAAGATACCAAAGTTCAAACCCCTAAGCGGCGTGGAAGAGGAACATTTGCATACAAGAAACGTGAACTGTACAGTGATCAAATATCTAATAAGATTGTAGTTGATAATGATAGCTTGGAGGAAGAAAATGAGGGCCATAATTTAGAGGGCAGTGAAGAAACAAGAAACTCAAAATATGGCACACGTCACATTCTTGTTTTAGCTGACTTTCCACCAAGTACTAGGACAATAGAGTTGGAGAATCTTTTTGAGGACTTCAGAGATCATGGAGTTGTTATTCGCTGGGTTAATGATACGGTTGCCCTTGCCGTTTTCAGAACACCAGCGATTGCACTTGAGGCTCGTAGTCATATTCAATGTTCTATGACAGTTCGAGTGCTTGATGAGGATGATACCCTTCTGAGTTCAATTTCACCAAAAGATCTGGAGCCTCCTCGGCAAAGGCCACAAACATCAGCAAGAACTGCCCAGAGGCTCATTGCACATGGAATGGGATTGAGATTACCTTCAACTGCCTTCGGGTCCAGAGACTTGAAGAAACAGGAAAATGATCGAAGGAGCCGCATAGTCACGCGACAAAAATTGAAAGATGATGCTTGGGGTGGGGACGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

38.9

Weight (kDa)

5.17

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 213, 1018
AciI CCGC 3 cut(s) 385, 472, 1006
AcoI YGGCCR 1 cut(s) 156
AcuI CTGAAG 2 cut(s) 188, 685
AfaI GTAC 2 cut(s) 515, 664
AfiI CCNNNNNNNGG 1 cut(s) 471
AflIII ACRYGT 2 cut(s) 304, 626
AgsI TTSAA 8 cut(s) 294, 311, 461, 800, 852, 954, 979, 1030
AhdI GACNNNNNGTC 1 cut(s) 205
AjiI CACGTC 1 cut(s) 629
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 8 cut(s) 83, 163, 194, 229, 273, 374, 558, 647
AluI AGCT 8 cut(s) 83, 163, 194, 229, 273, 374, 558, 647
Alw26I GTCTC 3 cut(s) 57, 213, 966
AoxI GGCC 4 cut(s) 135, 156, 577, 887
Asp700I GAANNNNTTC 2 cut(s) 48, 289
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 577, 966
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 1 cut(s) 849
AvaII GGWCC 1 cut(s) 966
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BalI TGGCCA 1 cut(s) 158
BbsI GAAGAC 2 cut(s) 27, 345
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 737
BciT130I CCWGG 1 cut(s) 282
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 3 cut(s) 57, 213, 966
BfaI CTAG 1 cut(s) 666
BfmI CTRYAG 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 880
BglII AGATCT 2 cut(s) 46, 865
BisI GCNGC 2 cut(s) 473, 1006
BlsI GCNGC 2 cut(s) 474, 1007
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 2 cut(s) 282, 423
Bme18I GGWCC 1 cut(s) 966
BmeRI GACNNNNNGTC 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 629
BmgT120I GGNCC 2 cut(s) 577, 966
BmiI GGNNCC 4 cut(s) 76, 873, 967, 1004
BmrFI CCNGG 2 cut(s) 282, 423
BmsI GCATC 2 cut(s) 267, 1027
BpiI GAAGAC 2 cut(s) 27, 345
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 2 cut(s) 49, 890
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 800
BpuMI CCSGG 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 878
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 2 cut(s) 352, 921
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 878
BseGI GGATG 2 cut(s) 364, 838
BseLI CCNNNNNNNGG 1 cut(s) 471
BseMI GCAATG 2 cut(s) 352, 921
BseMII CTCAG 2 cut(s) 120, 836
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 3 cut(s) 160, 397, 867
BseYI CCCAGC 1 cut(s) 726
Bsh1236I CGCG 2 cut(s) 213, 1018
BshFI GGCC 4 cut(s) 137, 158, 579, 889
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 471
BsmAI GTCTC 3 cut(s) 57, 213, 966
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 4 cut(s) 137, 158, 579, 889
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 5 cut(s) 46, 520, 706, 865, 994
BspACI CCGC 3 cut(s) 385, 472, 1006
BspANI GGCC 4 cut(s) 137, 158, 579, 889
BspCNI CTCAG 2 cut(s) 121, 837
BspFNI CGCG 2 cut(s) 213, 1018
BspLI GGNNCC 4 cut(s) 76, 873, 967, 1004
BsrDI GCAATG 2 cut(s) 352, 921
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 878
BssMI GATC 5 cut(s) 46, 520, 706, 865, 994
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 4 cut(s) 513, 518, 742, 814
Bst6I CTCTTC 3 cut(s) 244, 250, 475
BstAPI GCANNNNNTGC 1 cut(s) 908
BstAUI TGTACA 1 cut(s) 513
BstDEI CTNAG 3 cut(s) 129, 468, 845
BstF5I GGATG 2 cut(s) 364, 838
BstFNI CGCG 2 cut(s) 213, 1018
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 5 cut(s) 49, 523, 709, 868, 997
BstMAI GTCTC 3 cut(s) 57, 213, 966
BstMBI GATC 5 cut(s) 46, 520, 706, 865, 994
BstMWI GCNNNNNNNGC 4 cut(s) 286, 782, 880, 908
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 280, 421
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 2 cut(s) 213, 1018
BstV2I GAAGAC 2 cut(s) 27, 345
BstX2I RGATCY 2 cut(s) 46, 865
BstYI RGATCY 2 cut(s) 46, 865
BsuRI GGCC 4 cut(s) 137, 158, 579, 889
BtrI CACGTC 1 cut(s) 629
BtsCI GGATG 2 cut(s) 364, 838
BtsI GCAGTG 2 cut(s) 45, 601
BtsIMutI CAGTG 3 cut(s) 45, 523, 601
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 577, 966
Csp6I GTAC 2 cut(s) 514, 663
CviAII CATG 3 cut(s) 305, 710, 929
CviQI GTAC 2 cut(s) 514, 663
DdeI CTNAG 3 cut(s) 129, 468, 845
DpnI GATC 5 cut(s) 48, 522, 708, 867, 996
DpnII GATC 5 cut(s) 46, 520, 706, 865, 994
DriI GACNNNNNGTC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 3 cut(s) 244, 250, 475
Eam1105I GACNNNNNGTC 1 cut(s) 205
EarI CTCTTC 3 cut(s) 244, 250, 475
Eco47I GGWCC 1 cut(s) 966
Eco57I CTGAAG 2 cut(s) 188, 685
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 3 cut(s) 308, 713, 932
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 3 cut(s) 304, 709, 928
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 2 cut(s) 473, 1006
FokI GGATG 2 cut(s) 371, 845
Fsp4HI GCNGC 2 cut(s) 473, 1006
FspBI CTAG 1 cut(s) 666
GlaI GCGC 1 cut(s) 214
GluI GCNGC 2 cut(s) 473, 1006
GsaI CCCAGC 1 cut(s) 730
GsuI CTGGAG 2 cut(s) 49, 890
HaeIII GGCC 4 cut(s) 137, 158, 579, 889
HapII CCGG 1 cut(s) 423
HhaI GCGC 1 cut(s) 215
Hin1II CATG 3 cut(s) 308, 713, 932
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 3 cut(s) 92, 122, 685
HpaII CCGG 1 cut(s) 423
HphI GGTGA 1 cut(s) 849
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 4 cut(s) 358, 704, 761, 846
Hpy188III TCNNGA 4 cut(s) 110, 128, 869, 969
Hpy8I GTNNAC 1 cut(s) 509
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 5 cut(s) 212, 851, 960, 970, 993
HpyCH4III ACNGT 4 cut(s) 513, 518, 742, 814
HpyCH4IV ACGT 2 cut(s) 505, 628
HpyCH4V TGCA 5 cut(s) 345, 380, 494, 776, 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 286, 782, 880, 908
HpyF3I CTNAG 3 cut(s) 129, 468, 845
HpySE526I ACGT 2 cut(s) 505, 628
Hsp92II CATG 3 cut(s) 308, 713, 932
HspAI GCGC 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 5 cut(s) 46, 520, 706, 865, 994
LmnI GCTCC 4 cut(s) 30, 74, 871, 1002
LweI GCATC 2 cut(s) 267, 1027
MaeI CTAG 1 cut(s) 666
MaeII ACGT 2 cut(s) 505, 628
MaeIII GTNAC 3 cut(s) 233, 629, 1012
MalI GATC 5 cut(s) 48, 522, 708, 867, 996
MboI GATC 5 cut(s) 46, 520, 706, 865, 994
MflI RGATCY 2 cut(s) 46, 865
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 4 cut(s) 398, 583, 852, 1025
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 660
Mox20I TGGCCA 1 cut(s) 158
MroXI GAANNNNTTC 2 cut(s) 48, 289
MscI TGGCCA 1 cut(s) 158
MseI TTAA 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 158
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 2 cut(s) 282, 423
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 2 cut(s) 213, 1018
MwoI GCNNNNNNNGC 4 cut(s) 286, 782, 880, 908
NciI CCSGG 1 cut(s) 423
NdeII GATC 5 cut(s) 46, 520, 706, 865, 994
NlaIII CATG 3 cut(s) 308, 713, 932
NlaIV GGNNCC 4 cut(s) 76, 873, 967, 1004
NmeAIII GCCGAG 1 cut(s) 859
NmuCI GTSAC 3 cut(s) 233, 629, 1012
NspI RCATGY 1 cut(s) 308
PciI ACATGT 1 cut(s) 304
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 2 cut(s) 48, 289
PfeI GAWTC 2 cut(s) 92, 685
PkrI GCNGC 2 cut(s) 474, 1007
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 726
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 4 cut(s) 76, 873, 967, 1004
PspPI GGNCC 2 cut(s) 577, 966
PsuI RGATCY 2 cut(s) 46, 865
RsaI GTAC 2 cut(s) 515, 664
RsaNI GTAC 2 cut(s) 514, 663
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 2 cut(s) 473, 1006
Sau3AI GATC 5 cut(s) 46, 520, 706, 865, 994
Sau96I GGNCC 2 cut(s) 577, 966
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 282, 423
SfaNI GCATC 2 cut(s) 267, 1027
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 966
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
Sse9I AATT 4 cut(s) 398, 583, 852, 1025
SsiI CCGC 3 cut(s) 385, 472, 1006
SspMI CTAG 1 cut(s) 666
StyD4I CCNGG 2 cut(s) 280, 421
TaaI ACNGT 4 cut(s) 513, 518, 742, 814
TaiI ACGT 2 cut(s) 508, 631
TaqI TCGA 3 cut(s) 111, 817, 997
TasI AATT 4 cut(s) 398, 583, 852, 1025
TatI WGTACW 2 cut(s) 513, 662
TauI GCSGC 2 cut(s) 475, 1008
TfiI GAWTC 2 cut(s) 92, 685
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 3 cut(s) 45, 523, 601
TseFI GTSAC 3 cut(s) 233, 629, 1012
Tsp45I GTSAC 3 cut(s) 233, 629, 1012
TspDTI ATGAA 1 cut(s) 411
TspGWI ACGGA 2 cut(s) 87, 208
TspRI CASTG 3 cut(s) 45, 523, 601
VpaK11BI GGWCC 1 cut(s) 966
XceI RCATGY 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmnI GAANNNNTTC 2 cut(s) 48, 289
XspI CTAG 1 cut(s) 666
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.