Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010292

Physical Location & Seq

Genomic Coordinates Forward (+)

45599965 .. 45606089

Gene Structure 6125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCCAGAGCAGAAGAAGAAGACAACTGGAGTGAGGCAGTGGAAGATCTTGTAACAGCAGGAGACACCGACGGAGCCATAGCTCTTTTGGAATCGGTAATCTCCAATCTCGAAAACAAAGACTCTCCTGAGTTGGCCTCTGCTCTCTGCGACTTGGCCAAGCTCTACTCCTCCAAAGGCTTCTCTCTCAAAGCTGACGACCTTCAGTCTCGCGCTTCCGCCATCAAGCTTCGTCACTCTTCCTCTTCTGGTGTTGCTACAGAGAAGCAGAGCTTGATGCCTGGAAAGAATTCAACAGATGGACATGTTGAAAACTCAACGAAATCGCAGGGTTCTTCTTCTTGCAATGGGTCTTCGGATGATGATTGGGAAGCTATTGCAGACCGCACACCTGATGAATTACTCTCCTCACAATCTTTGCCCGGAGTATCAAAACTTTCTTTGGAAGATACCAAAGTTCAAACCCCTAAGCGGCGTGGAAGAGGAACATTTGCATACAAGAAACGTGAACTGTACAGTGATCAAATATCTAATAAGATTGTAGTTGATAATGATAGCTTGGAGGAAGAAAATGAGGGCCATAATTTAGAGGGCAGTGAAGAAACAAGAAACTCAAAATATGGCACACGTCACATTCTTGTTTTAGCTGACTGTCCACCAAGTACTAGGACAATAGAGTTGGAGAATCTTTTTGAGGACTTCAGAGATCATGGAGTTGTTATTCGCTGGGTTAATGATACGGTTGCCCTTGCCGTTTTCAGAACACCAGCGATTGCACTTGAGGCTCGTAGTCATATTCAATGTTCTATGACAGTTCGAGTGCTTGATGAGGATGATACCCTTCTGAGTTCAATTTCACCAAAAGATCTGGAGCCTCCTCGGCAAAGGCCACAAACATCAGCAAGAACTGCCCAGAGGCTCATTGCACATGGAATGGGATTGAAATTACCTTCAACTGCCTTCGGGTCCAGAGACTTGAAGAAACAGGAAAATGATCGAAGGAGCCGCATAGTCACGCGACAAAAATTGAAAGATGATGCTTGGGGTGGGGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

38.76

Weight (kDa)

5.12

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22120
fragaria_vesca	FvH4_3g26410 FvH4_3g26410 FvH4_3g26410 FvH4_3g26410
malus_domestica	MD14G1087800.v1.1
prunus_persica	Prupe.7G038700_v2.0.a1 Prupe.7G038700_v2.0.a1
pyrus_communis	pycom14g07790
rosa_chinensis	RchiOBHm_Chr5g0048501
rosa_laevigata	RLG00000034530
rosa_multiflora	Rmu_sc0007341.1_g000051 Rmu_sc0021801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033300
rosa_rugosa	Rorug05G0239100
rosa_samantha	Rh5AG318900 Rh5BG329000 Rh5CG355000 Rh5DG340200
rosa_wichuraiana	Rw5G029810 Rw5G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	213, 1018
AciI	CCGC	4 cut(s)	219, 385, 472, 1006
AcoI	YGGCCR	2 cut(s)	3, 156
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	2 cut(s)	188, 685
AfaI	GTAC	2 cut(s)	515, 664
AfiI	CCNNNNNNNGG	1 cut(s)	471
AflIII	ACRYGT	2 cut(s)	304, 626
AgsI	TTSAA	9 cut(s)	294, 311, 461, 800, 852, 943, 954, 979, 1030
AhdI	GACNNNNNGTC	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	8 cut(s)	83, 163, 194, 229, 273, 374, 558, 647
AluI	AGCT	8 cut(s)	83, 163, 194, 229, 273, 374, 558, 647
Alw26I	GTCTC	3 cut(s)	57, 213, 966
AoxI	GGCC	5 cut(s)	3, 135, 156, 577, 887
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	577, 966
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	849
AvaII	GGWCC	1 cut(s)	966
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BalI	TGGCCA	2 cut(s)	5, 158
BbsI	GAAGAC	2 cut(s)	27, 345
BccI	CCATC	2 cut(s)	230, 293
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	3 cut(s)	57, 213, 966
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	880
BglII	AGATCT	2 cut(s)	46, 865
BisI	GCNGC	2 cut(s)	473, 1006
BlsI	GCNGC	2 cut(s)	474, 1007
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	2 cut(s)	282, 423
Bme18I	GGWCC	1 cut(s)	966
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	577, 966
BmiI	GGNNCC	4 cut(s)	76, 873, 967, 1004
BmrFI	CCNGG	2 cut(s)	282, 423
BmsI	GCATC	2 cut(s)	267, 1027
BpiI	GAAGAC	2 cut(s)	27, 345
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	2 cut(s)	49, 890
Bpu10I	CCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	878
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	2 cut(s)	352, 921
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	878
BseGI	GGATG	3 cut(s)	364, 838, 1057
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMI	GCAATG	2 cut(s)	352, 921
BseMII	CTCAG	2 cut(s)	120, 836
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	3 cut(s)	160, 397, 867
BseYI	CCCAGC	1 cut(s)	726
Bsh1236I	CGCG	2 cut(s)	213, 1018
BshFI	GGCC	5 cut(s)	5, 137, 158, 579, 889
BsiSI	CCGG	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	3 cut(s)	57, 213, 966
BsnI	GGCC	5 cut(s)	5, 137, 158, 579, 889
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	5 cut(s)	46, 520, 706, 865, 994
BspACI	CCGC	4 cut(s)	219, 385, 472, 1006
BspANI	GGCC	5 cut(s)	5, 137, 158, 579, 889
BspCNI	CTCAG	2 cut(s)	121, 837
BspFNI	CGCG	2 cut(s)	213, 1018
BspLI	GGNNCC	4 cut(s)	76, 873, 967, 1004
BsrDI	GCAATG	2 cut(s)	352, 921
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	878
BssMI	GATC	5 cut(s)	46, 520, 706, 865, 994
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	5 cut(s)	513, 518, 653, 742, 814
Bst6I	CTCTTC	3 cut(s)	244, 250, 475
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstAUI	TGTACA	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	129, 468, 845
BstF5I	GGATG	3 cut(s)	364, 838, 1057
BstFNI	CGCG	2 cut(s)	213, 1018
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	5 cut(s)	49, 523, 709, 868, 997
BstMAI	GTCTC	3 cut(s)	57, 213, 966
BstMBI	GATC	5 cut(s)	46, 520, 706, 865, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	782, 880, 908
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	280, 421
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	2 cut(s)	213, 1018
BstV2I	GAAGAC	2 cut(s)	27, 345
BstX2I	RGATCY	2 cut(s)	46, 865
BstYI	RGATCY	2 cut(s)	46, 865
BsuRI	GGCC	5 cut(s)	5, 137, 158, 579, 889
BtrI	CACGTC	1 cut(s)	629
BtsCI	GGATG	3 cut(s)	364, 838, 1057
BtsI	GCAGTG	2 cut(s)	45, 601
BtsIMutI	CAGTG	3 cut(s)	45, 523, 601
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	577, 966
Csp6I	GTAC	2 cut(s)	514, 663
CviAII	CATG	3 cut(s)	305, 710, 929
CviQI	GTAC	2 cut(s)	514, 663
DdeI	CTNAG	3 cut(s)	129, 468, 845
DpnI	GATC	5 cut(s)	48, 522, 708, 867, 996
DpnII	GATC	5 cut(s)	46, 520, 706, 865, 994
DriI	GACNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	2 cut(s)	3, 156
Eam1104I	CTCTTC	3 cut(s)	244, 250, 475
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	3 cut(s)	244, 250, 475
EciI	GGCGGA	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	966
Eco57I	CTGAAG	2 cut(s)	188, 685
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	3 cut(s)	308, 713, 932
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	3 cut(s)	304, 709, 928
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	473, 1006
FokI	GGATG	2 cut(s)	371, 845
Fsp4HI	GCNGC	2 cut(s)	473, 1006
FspBI	CTAG	1 cut(s)	666
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	473, 1006
GsaI	CCCAGC	1 cut(s)	730
GsuI	CTGGAG	2 cut(s)	49, 890
HaeIII	GGCC	5 cut(s)	5, 137, 158, 579, 889
HapII	CCGG	1 cut(s)	423
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	308, 713, 932
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	92, 122, 685
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	1 cut(s)	849
Hpy166II	GTNNAC	2 cut(s)	509, 656
Hpy188I	TCNGA	4 cut(s)	358, 704, 761, 846
Hpy188III	TCNNGA	4 cut(s)	110, 128, 869, 969
Hpy8I	GTNNAC	2 cut(s)	509, 656
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	212, 851, 960, 970, 993
HpyCH4III	ACNGT	5 cut(s)	513, 518, 653, 742, 814
HpyCH4IV	ACGT	2 cut(s)	505, 628
HpyCH4V	TGCA	5 cut(s)	345, 380, 494, 776, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	782, 880, 908
HpyF3I	CTNAG	3 cut(s)	129, 468, 845
HpySE526I	ACGT	2 cut(s)	505, 628
Hsp92II	CATG	3 cut(s)	308, 713, 932
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	46, 520, 706, 865, 994
LmnI	GCTCC	3 cut(s)	74, 871, 1002
LweI	GCATC	2 cut(s)	267, 1027
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	2 cut(s)	505, 628
MaeIII	GTNAC	4 cut(s)	52, 233, 629, 1012
MalI	GATC	5 cut(s)	48, 522, 708, 867, 996
MboI	GATC	5 cut(s)	46, 520, 706, 865, 994
MflI	RGATCY	2 cut(s)	46, 865
MlsI	TGGCCA	2 cut(s)	5, 158
MluCI	AATT	6 cut(s)	289, 398, 583, 852, 944, 1025
MluNI	TGGCCA	2 cut(s)	5, 158
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	660
Mox20I	TGGCCA	2 cut(s)	5, 158
MroXI	GAANNNNTTC	1 cut(s)	289
MscI	TGGCCA	2 cut(s)	5, 158
MseI	TTAA	1 cut(s)	732
Msp20I	TGGCCA	2 cut(s)	5, 158
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	2 cut(s)	282, 423
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	2 cut(s)	213, 1018
MwoI	GCNNNNNNNGC	3 cut(s)	782, 880, 908
NciI	CCSGG	1 cut(s)	423
NdeII	GATC	5 cut(s)	46, 520, 706, 865, 994
NlaIII	CATG	3 cut(s)	308, 713, 932
NlaIV	GGNNCC	4 cut(s)	76, 873, 967, 1004
NmeAIII	GCCGAG	1 cut(s)	859
NmuCI	GTSAC	3 cut(s)	233, 629, 1012
NspI	RCATGY	1 cut(s)	308
PciI	ACATGT	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	92, 685
PkrI	GCNGC	2 cut(s)	474, 1007
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	4 cut(s)	76, 873, 967, 1004
PspPI	GGNCC	2 cut(s)	577, 966
PsuI	RGATCY	2 cut(s)	46, 865
RsaI	GTAC	2 cut(s)	515, 664
RsaNI	GTAC	2 cut(s)	514, 663
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	2 cut(s)	473, 1006
Sau3AI	GATC	5 cut(s)	46, 520, 706, 865, 994
Sau96I	GGNCC	2 cut(s)	577, 966
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	282, 423
SfaNI	GCATC	2 cut(s)	267, 1027
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	966
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	6 cut(s)	289, 398, 583, 852, 944, 1025
SsiI	CCGC	4 cut(s)	219, 385, 472, 1006
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	280, 421
TaaI	ACNGT	5 cut(s)	513, 518, 653, 742, 814
TaiI	ACGT	2 cut(s)	508, 631
TaqI	TCGA	3 cut(s)	111, 817, 997
TasI	AATT	6 cut(s)	289, 398, 583, 852, 944, 1025
TatI	WGTACW	2 cut(s)	513, 662
TauI	GCSGC	2 cut(s)	475, 1008
TfiI	GAWTC	2 cut(s)	92, 685
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	3 cut(s)	45, 523, 601
TseFI	GTSAC	3 cut(s)	233, 629, 1012
Tsp45I	GTSAC	3 cut(s)	233, 629, 1012
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	3 cut(s)	45, 523, 601
VpaK11BI	GGWCC	1 cut(s)	966
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	1 cut(s)	666
ZrmI	AGTACT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.