Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010292

Physical Location & Seq

Genomic Coordinates Reverse (-)

48038965 .. 48050217

Gene Structure 11253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATGGTGGGAAATGGTATTTTCTATTGTTTTCAAAAGTGTTTGAGGATTTGGAGAGTTACGGTTGTGCTTCTCCTTTTGGGTTGGTCACAGGTTGTCGGGGAACTTGTGGCTGAATCCGAGGTAGCTTCTTTGGTGTCTTCAATCGAAGATCTTGTAACAGCAGGAGACACCGACGCAGCCATAGCTCTTTTGGAATCGGTAATCTCCAATCTCGAAAACAAAGACTCTCCTGAGTTGGCCTCTGCTCTCTGCGATTTGGCCAAGCTCTACTCCTCCAAAGGCTTCTCTCTCAAAGCTGACGACCTTCAGTCTCGCGCTTCCCTCATCAAGCTTCGTCACTCTTCCTCTTCTTCTGGTGTTGCTACAGAGAAGCAGAGCTTGATGCCTGGAAAGCATTCAACAGATGGACATGTTGAAAACTCAACGAAATCGCAGGGTTCTTCTTCTTGCAATGGCTCTTCGGATGATGATTGGGAAGCTATTGCAGACCGCACACCTGATGAATTACTCTCCTCACAATCTTTGCCCGGAGTATCAAAACTTTCTTTGGAAGATACCAAAGTTCAAACCCCTAAGCGGCGTGGAAGAGGAACATTTGCATACAAGAAACGTGAACTGTACAGTGATCAAATATCTAATAAGATTGTAGTTGATAATGATAGCTTGGAGGAAGAAAATGAGGGCCATAATTTAGAGGGCAGTGAAGAAACAAGAAACTCAAAATACGGCACACGTCACATTCTTGTTTTAGCTGACTTTCCACCAAGTACTAGGACAATAGAGTTGGAGAATCTTTTTGAGGACTTCAGAGATCGTGGAGTTGTTATTCGCTGGGTTAATGATACGGTTGCCCTTGCCGTTTTCAGAACACCAGCGATTGCACTTGAGGCTCGTAGTCATATTCAATGTTCTATGACAGTTCGAGTGCTTGATGAGGATGATACCCTTCTGAGTTCAATTTCACCAAAAGATCTGGAGCCTCCTCGGCAAAGGCCACAAACATCAGCAAGAACTGCCCAGAGGCTCATTGCACATGGAATGGGATTGAAATTACCTTCAACTGCCTTCGGGTCCAGAGACTTGAAGAAACAGGAAAATGATCGAAGGAGCCGCATAGTGACGCGACAAAAATTGAAAGATGATGCTTGGGGTGGGGACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

42.8

Weight (kDa)

5.47

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22120
fragaria_vesca	FvH4_3g26410 FvH4_3g26410 FvH4_3g26410 FvH4_3g26410
malus_domestica	MD14G1087800.v1.1
prunus_persica	Prupe.7G038700_v2.0.a1 Prupe.7G038700_v2.0.a1
pyrus_communis	pycom14g07790
rosa_chinensis	RchiOBHm_Chr5g0048501
rosa_laevigata	RLG00000034530
rosa_multiflora	Rmu_sc0007341.1_g000051 Rmu_sc0021801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033300
rosa_rugosa	Rorug05G0239100
rosa_samantha	Rh5AG318900 Rh5BG329000 Rh5CG355000 Rh5DG340200
rosa_wichuraiana	Rw5G029810 Rw5G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	318, 1126
AciI	CCGC	3 cut(s)	493, 580, 1114
AcoI	YGGCCR	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	293, 793
AfaI	GTAC	2 cut(s)	623, 772
AfiI	CCNNNNNNNGG	1 cut(s)	579
AflIII	ACRYGT	2 cut(s)	412, 734
AhdI	GACNNNNNGTC	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	9 cut(s)	128, 188, 268, 299, 334, 381, 482, 666, 755
AluI	AGCT	9 cut(s)	128, 188, 268, 299, 334, 381, 482, 666, 755
Alw26I	GTCTC	3 cut(s)	162, 318, 1074
AoxI	GGCC	4 cut(s)	240, 261, 685, 995
ApeKI	GCWGC	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	685, 1074
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	1 cut(s)	957
AvaII	GGWCC	1 cut(s)	1074
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BalI	TGGCCA	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	2 cut(s)	745, 845
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	3 cut(s)	162, 318, 1074
BfaI	CTAG	1 cut(s)	774
BfmI	CTRYAG	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	988
BglII	AGATCT	2 cut(s)	151, 973
BisI	GCNGC	3 cut(s)	180, 581, 1114
BlsI	GCNGC	3 cut(s)	181, 582, 1115
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	2 cut(s)	390, 531
Bme18I	GGWCC	1 cut(s)	1074
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	685, 1074
BmiI	GGNNCC	3 cut(s)	981, 1075, 1112
BmrFI	CCNGG	2 cut(s)	390, 531
BmsI	GCATC	2 cut(s)	375, 1135
BpiI	GAAGAC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpmI	CTGGAG	1 cut(s)	998
Bpu10I	CCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	908
BpuMI	CCSGG	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	120, 986
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse3DI	GCAATG	2 cut(s)	460, 1029
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	120, 986
BseGI	GGATG	2 cut(s)	472, 946
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseMI	GCAATG	2 cut(s)	460, 1029
BseMII	CTCAG	2 cut(s)	225, 944
BseRI	GAGGAG	3 cut(s)	265, 505, 975
BseXI	GCAGC	1 cut(s)	191
BseYI	CCCAGC	1 cut(s)	834
Bsh1236I	CGCG	2 cut(s)	318, 1126
BshFI	GGCC	4 cut(s)	242, 263, 687, 997
BsiSI	CCGG	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmAI	GTCTC	3 cut(s)	162, 318, 1074
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	242, 263, 687, 997
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	5 cut(s)	151, 628, 814, 973, 1102
BspACI	CCGC	3 cut(s)	493, 580, 1114
BspANI	GGCC	4 cut(s)	242, 263, 687, 997
BspCNI	CTCAG	2 cut(s)	226, 945
BspFNI	CGCG	2 cut(s)	318, 1126
BspLI	GGNNCC	3 cut(s)	981, 1075, 1112
BspQI	GCTCTTC	1 cut(s)	466
BsrDI	GCAATG	2 cut(s)	460, 1029
BsrGI	TGTACA	1 cut(s)	621
BssECI	CCNNGG	2 cut(s)	120, 986
BssMI	GATC	5 cut(s)	151, 628, 814, 973, 1102
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	5 cut(s)	64, 621, 626, 850, 922
Bst6I	CTCTTC	4 cut(s)	349, 355, 466, 583
BstAPI	GCANNNNNTGC	1 cut(s)	1016
BstAUI	TGTACA	1 cut(s)	621
BstDEI	CTNAG	3 cut(s)	234, 576, 953
BstF5I	GGATG	2 cut(s)	472, 946
BstFNI	CGCG	2 cut(s)	318, 1126
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	5 cut(s)	154, 631, 817, 976, 1105
BstMAI	GTCTC	3 cut(s)	162, 318, 1074
BstMBI	GATC	5 cut(s)	151, 628, 814, 973, 1102
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 394, 890, 988, 1016
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	388, 529
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	2 cut(s)	318, 1126
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	2 cut(s)	151, 973
BstYI	RGATCY	2 cut(s)	151, 973
BsuRI	GGCC	4 cut(s)	242, 263, 687, 997
BtrI	CACGTC	1 cut(s)	737
BtsCI	GGATG	2 cut(s)	472, 946
BtsI	GCAGTG	1 cut(s)	709
BtsIMutI	CAGTG	2 cut(s)	631, 709
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	685, 1074
CseI	GACGC	2 cut(s)	185, 1132
Csp6I	GTAC	2 cut(s)	622, 771
CviAII	CATG	2 cut(s)	413, 1037
CviQI	GTAC	2 cut(s)	622, 771
DdeI	CTNAG	3 cut(s)	234, 576, 953
DpnI	GATC	5 cut(s)	153, 630, 816, 975, 1104
DpnII	GATC	5 cut(s)	151, 628, 814, 973, 1102
DriI	GACNNNNNGTC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	4 cut(s)	349, 355, 466, 583
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EarI	CTCTTC	4 cut(s)	349, 355, 466, 583
Eco47I	GGWCC	1 cut(s)	1074
Eco57I	CTGAAG	2 cut(s)	293, 793
EcoRII	CCWGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	416, 1040
FaiI	YATR	8 cut(s)	185, 414, 604, 690, 903, 917, 1038, 1118
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FatI	CATG	2 cut(s)	412, 1036
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	3 cut(s)	180, 581, 1114
FokI	GGATG	2 cut(s)	479, 953
Fsp4HI	GCNGC	3 cut(s)	180, 581, 1114
FspBI	CTAG	1 cut(s)	774
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	3 cut(s)	180, 581, 1114
GsaI	CCCAGC	1 cut(s)	838
GsuI	CTGGAG	1 cut(s)	998
HaeIII	GGCC	4 cut(s)	242, 263, 687, 997
HapII	CCGG	1 cut(s)	531
HgaI	GACGC	2 cut(s)	185, 1132
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	416, 1040
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	4 cut(s)	116, 197, 227, 793
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	1 cut(s)	957
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	5 cut(s)	121, 466, 812, 869, 954
Hpy188III	TCNNGA	4 cut(s)	215, 233, 977, 1077
Hpy8I	GTNNAC	1 cut(s)	617
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	5 cut(s)	317, 959, 1068, 1078, 1101
HpyCH4III	ACNGT	5 cut(s)	64, 621, 626, 850, 922
HpyCH4IV	ACGT	2 cut(s)	613, 736
HpyCH4V	TGCA	5 cut(s)	453, 488, 602, 884, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 394, 890, 988, 1016
HpyF3I	CTNAG	3 cut(s)	234, 576, 953
HpySE526I	ACGT	2 cut(s)	613, 736
Hsp92II	CATG	2 cut(s)	416, 1040
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	5 cut(s)	151, 628, 814, 973, 1102
LguI	GCTCTTC	1 cut(s)	466
LmnI	GCTCC	2 cut(s)	979, 1110
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	2 cut(s)	375, 1135
MaeI	CTAG	1 cut(s)	774
MaeII	ACGT	2 cut(s)	613, 736
MaeIII	GTNAC	6 cut(s)	58, 87, 157, 338, 737, 1120
MalI	GATC	5 cut(s)	153, 630, 816, 975, 1104
MboI	GATC	5 cut(s)	151, 628, 814, 973, 1102
MflI	RGATCY	2 cut(s)	151, 973
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	5 cut(s)	506, 691, 960, 1052, 1133
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	768
Mox20I	TGGCCA	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	397
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	840
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	2 cut(s)	390, 531
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	2 cut(s)	318, 1126
MwoI	GCNNNNNNNGC	5 cut(s)	185, 394, 890, 988, 1016
NciI	CCSGG	1 cut(s)	531
NdeII	GATC	5 cut(s)	151, 628, 814, 973, 1102
NlaIII	CATG	2 cut(s)	416, 1040
NlaIV	GGNNCC	3 cut(s)	981, 1075, 1112
NmeAIII	GCCGAG	1 cut(s)	967
NmuCI	GTSAC	4 cut(s)	87, 338, 737, 1120
NspI	RCATGY	1 cut(s)	416
PciI	ACATGT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	466
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	116, 197, 793
PkrI	GCNGC	3 cut(s)	181, 582, 1115
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PscI	ACATGT	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	834
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	981, 1075, 1112
PspPI	GGNCC	2 cut(s)	685, 1074
PsuI	RGATCY	2 cut(s)	151, 973
RsaI	GTAC	2 cut(s)	623, 772
RsaNI	GTAC	2 cut(s)	622, 771
SapI	GCTCTTC	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	840
SatI	GCNGC	3 cut(s)	180, 581, 1114
Sau3AI	GATC	5 cut(s)	151, 628, 814, 973, 1102
Sau96I	GGNCC	2 cut(s)	685, 1074
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	390, 531
SfaNI	GCATC	2 cut(s)	375, 1135
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	1074
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
Sse9I	AATT	5 cut(s)	506, 691, 960, 1052, 1133
SsiI	CCGC	3 cut(s)	493, 580, 1114
SspMI	CTAG	1 cut(s)	774
StyD4I	CCNGG	2 cut(s)	388, 529
TaaI	ACNGT	5 cut(s)	64, 621, 626, 850, 922
TaiI	ACGT	2 cut(s)	616, 739
TaqI	TCGA	4 cut(s)	147, 216, 925, 1105
TasI	AATT	5 cut(s)	506, 691, 960, 1052, 1133
TatI	WGTACW	2 cut(s)	621, 770
TauI	GCSGC	2 cut(s)	583, 1116
TfiI	GAWTC	3 cut(s)	116, 197, 793
Tru1I	TTAA	1 cut(s)	840
Tru9I	TTAA	1 cut(s)	840
TscAI	CASTG	2 cut(s)	631, 709
TseFI	GTSAC	4 cut(s)	87, 338, 737, 1120
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	4 cut(s)	87, 338, 737, 1120
TspDTI	ATGAA	1 cut(s)	519
TspRI	CASTG	2 cut(s)	631, 709
VpaK11BI	GGWCC	1 cut(s)	1074
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	1 cut(s)	774
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.