AT5G22390

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011240
Physical Location & Seq
Reverse (-)
7418095 .. 7419335
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22390.1

Sequence Viewer

Length: 609 bp
ATGGCAGCTTATGGAAGCTTTCACCGAATATTCGATAACCCAAGACAAGACAACTCTCCAAAGTCGTTTCTTGATACTCTCTCCTCTTCTTCACCTTGGAACCCAAGCAAAGGCCTCCACGTCACAACCCACCACGACGAAACGCCACCGCCGTTTACAGAGATATTCGGTGAGCTTCATTTCAGAGAATCATCCCATTCTTCTTACGAGAAAACCTCAGCCGAGAACAGCAGTCTTCAGCTGTGTACGGAAGGTCTAGGGTCAGAGAGTTATTACGGCTTGGAAGATGAAAAAGTCAACGGTGATGGTGACGGTGATGATGATGAGATTGAAGTGAAGGGTAAAGATAACGGAAGCAACGATGAGGAGGAGTGGGAACCACGAAGGAAGGAACGGAAAGAGTATCCTCCGGCGATGACTAGGATGAGCTTCAAGACTTATAGAAAAGAAGGGAGGCTTGTGTTGGAAGAAGTTAGGATTCCAAGGAGAGAGTTCCTTCGTGCAAGCCGCGAAGATGGTCGACTCAGGTTGAAGTTGGTTCAACCTGAGGACGACCATGACGAAGAGGAAGAGAATGAGAAAGATAAACATGTCGACGAGGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

202

Amino Acids

23.44

Weight (kDa)

4.77

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 134 - 179 1.6e-14 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 520, 594
AccII CGCG 1 cut(s) 510
AciI CCGC 2 cut(s) 149, 508
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 589
AgsI TTSAA 4 cut(s) 332, 433, 532, 542
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 5 cut(s) 8, 18, 175, 241, 429
AluI AGCT 5 cut(s) 8, 18, 175, 241, 429
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 5
AsuHPI GGTGA 6 cut(s) 14, 84, 182, 314, 320, 326
AxyI CCTNAGG 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 299, 509
BceAI ACGGC 2 cut(s) 136, 292
BciVI GTATCC 1 cut(s) 414
BfaI CTAG 2 cut(s) 257, 420
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 2 cut(s) 6, 508
BlsI GCNGC 2 cut(s) 7, 509
BmgBI CACGTC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 101, 378
BpiI GAAGAC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bpu10I CCTNAGC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 95, 482
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse21I CCTNAGG 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 95, 482
BseGI GGATG 3 cut(s) 191, 429, 607
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 3 cut(s) 231, 537, 538
BseRI GAGGAG 3 cut(s) 73, 380, 383
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 1 cut(s) 114
BspACI CCGC 2 cut(s) 149, 508
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 3 cut(s) 230, 537, 538
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 101, 378
BssECI CCNNGG 2 cut(s) 95, 482
BssT1I CCWWGG 2 cut(s) 95, 482
Bst4CI ACNGT 2 cut(s) 302, 314
Bst6I CTCTTC 3 cut(s) 91, 558, 564
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 3 cut(s) 217, 524, 546
BstF5I GGATG 3 cut(s) 191, 429, 607
BstFNI CGCG 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 593
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 227
Bsu36I CCTNAGG 1 cut(s) 546
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 428
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 3 cut(s) 191, 429, 607
Cac8I GCNNGC 1 cut(s) 505
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 557, 590
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 3 cut(s) 217, 524, 546
Eam1104I CTCTTC 3 cut(s) 91, 558, 564
EarI CTCTTC 3 cut(s) 91, 558, 564
Eco130I CCWWGG 2 cut(s) 95, 482
Eco147I AGGCCT 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 221
Eco81I CCTNAGG 1 cut(s) 546
EcoT14I CCWWGG 2 cut(s) 95, 482
ErhI CCWWGG 2 cut(s) 95, 482
FaeI CATG 2 cut(s) 560, 593
FaiI YATR 4 cut(s) 12, 441, 558, 591
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 2 cut(s) 556, 589
FblI GTMKAC 2 cut(s) 520, 594
Fnu4HI GCNGC 2 cut(s) 6, 508
FokI GGATG 2 cut(s) 178, 436
Fsp4HI GCNGC 2 cut(s) 6, 508
FspBI CTAG 2 cut(s) 257, 420
GluI GCNGC 2 cut(s) 6, 508
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 410
Hin1II CATG 2 cut(s) 560, 593
HincII GTYRAC 3 cut(s) 298, 521, 595
HindII GTYRAC 3 cut(s) 298, 521, 595
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 3 cut(s) 188, 478, 522
HpaII CCGG 1 cut(s) 410
HphI GGTGA 6 cut(s) 14, 84, 182, 314, 320, 326
Hpy166II GTNNAC 5 cut(s) 156, 246, 298, 521, 595
Hpy188I TCNGA 2 cut(s) 185, 265
Hpy188III TCNNGA 2 cut(s) 71, 433
Hpy8I GTNNAC 5 cut(s) 156, 246, 298, 521, 595
Hpy99I CGWCG 2 cut(s) 140, 599
HpyAV CCTTC 6 cut(s) 245, 331, 378, 382, 443, 506
HpyCH4III ACNGT 2 cut(s) 302, 314
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 503
HpyF3I CTNAG 3 cut(s) 217, 524, 546
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 2 cut(s) 560, 593
LpnPI CCDG 3 cut(s) 423, 511, 558
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 257, 420
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 121, 308
MboII GAAGA 9 cut(s) 78, 81, 192, 227, 296, 479, 524, 575, 581
MlyI GAGTC 1 cut(s) 516
MmeI TCCRAC 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 510
NlaIII CATG 2 cut(s) 560, 593
NlaIV GGNNCC 2 cut(s) 101, 378
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 121, 308
NspI RCATGY 1 cut(s) 593
PceI AGGCCT 1 cut(s) 114
PciI ACATGT 1 cut(s) 589
PcsI WCGNNNNNNNCGW 3 cut(s) 149, 357, 558
PfeI GAWTC 2 cut(s) 188, 478
PkrI GCNGC 2 cut(s) 7, 509
PleI GAGTC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 516
PscI ACATGT 1 cut(s) 589
PspN4I GGNNCC 2 cut(s) 101, 378
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SalI GTCGAC 2 cut(s) 519, 593
SatI GCNGC 2 cut(s) 6, 508
SchI GAGTC 1 cut(s) 516
SseBI AGGCCT 1 cut(s) 114
SsiI CCGC 2 cut(s) 149, 508
SspI AATATT 1 cut(s) 30
SspMI CTAG 2 cut(s) 257, 420
StuI AGGCCT 1 cut(s) 114
StyI CCWWGG 2 cut(s) 95, 482
TaaI ACNGT 2 cut(s) 302, 314
TaiI ACGT 1 cut(s) 123
TaqI TCGA 3 cut(s) 33, 520, 594
TauI GCSGC 1 cut(s) 510
TfiI GAWTC 2 cut(s) 188, 478
TseFI GTSAC 2 cut(s) 121, 308
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 121, 308
TspDTI ATGAA 2 cut(s) 167, 303
TspGWI ACGGA 3 cut(s) 263, 366, 409
XceI RCATGY 1 cut(s) 593
XmiI GTMKAC 2 cut(s) 520, 594
XspI CTAG 2 cut(s) 257, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.