Rw5G028350

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011240
Physical Location & Seq
Reverse (-)
42857715 .. 42858646
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028350.1

Sequence Viewer

Length: 819 bp
ATGGCTGCCTGTGGAAGCCTCCAACAAATCTTTGAGACCCCATTGCCCGCTGAGAACCCAACACTGCTCGACCCCCTCTCCTCATGGAACATTCAGCCTGTCACACCCATCAACAACTCGTCCTTCACTGAGATCTTCGGAGAGCTTCATTTCAATGACAATTCTCCACTGTCATCATCGTCACCTCATGTGTCAACATCCTTCTCATCATCATCTTTGACTGACCAGAAGATCAACCCCATATCAAAGGAAGAATCTTTTTTAAGCACAGAGAAGAATTACAACAGGTCTCATAAAAGCAGTGACAGCTTTTCATCAATGAATTCAGAAGCTTGCAACTGTGCACAGAGGGGCTTGAATGGCAAAATATTCAAGAGGAGCAGGTTAGTTTTCACGACAAAGCCATGTTATATGGCAACATCAGATAATCATTTTTGTGGACATAAGAAGTCAAGGAGTGCTGGTGTTGGAGGATTCCCTCCACCAATTTCTTGCATAAGCAAGAGTGGGAAGCCTTGGGTTTGCTTCAAGTCTTATAGGCACAACGGCAGGTTTGTCCTCAAAGAAATAAGAATTCCCACCCAGGAGTTCCTTCATGCATACAGAGAAGGTGGTCGTCTCAAGCTGAACTTCATTCACCATGAGGATGAACAGATCCTCAGCGAGGTAGATCGGGAAGACGATGATAACGATGATGAAGAAGATTGTGATGATAATACTGACGATCAGGAAGAAAATGAAGATGCGCATGCAGACGACGATGCAGTAAATGAAGGAAATGAGGCAAACACTGGAACCTGCGGTACAAATGAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

272

Amino Acids

30.28

Weight (kDa)

4.84

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 159 - 211 6.3e-22 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 747
Acc36I ACCTGC 3 cut(s) 372, 540, 806
AciI CCGC 2 cut(s) 48, 801
AclWI GGATC 1 cut(s) 649
AcsI RAATTY 2 cut(s) 322, 573
AfaI GTAC 1 cut(s) 805
AfiI CCNNNNNNNGG 1 cut(s) 664
AgsI TTSAA 4 cut(s) 154, 358, 373, 529
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 4 cut(s) 145, 309, 332, 625
AluI AGCT 4 cut(s) 145, 309, 332, 625
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 29, 294, 623
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 1 cut(s) 649
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 322, 573
AspLEI GCGC 1 cut(s) 748
AsuHPI GGTGA 2 cut(s) 174, 629
BaeGI GKGCMC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 346
BbvCI CCTCAGC 1 cut(s) 659
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 562
BciT130I CCWGG 1 cut(s) 584
BcoDI GTCTC 3 cut(s) 29, 294, 623
BfuAI ACCTGC 3 cut(s) 372, 540, 806
BglII AGATCT 1 cut(s) 132
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 796
BmrFI CCNGG 1 cut(s) 584
BmsI GCATC 2 cut(s) 733, 751
BpiI GAAGAC 1 cut(s) 684
Bpu10I CCTNAGC 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 605
BsaI GGTCTC 2 cut(s) 29, 294
BsaJI CCNNGG 2 cut(s) 515, 582
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 448, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse1I ACTGG 1 cut(s) 796
Bse3DI GCAATG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 584
BseDI CCNNGG 2 cut(s) 515, 582
BseGI GGATG 2 cut(s) 197, 652
BseLI CCNNNNNNNGG 1 cut(s) 664
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 3 cut(s) 42, 120, 673
BseNI ACTGG 1 cut(s) 796
BseRI GAGGAG 2 cut(s) 70, 391
BseSI GKGCMC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 664
BsmAI GTCTC 3 cut(s) 29, 294, 623
BsmBI CGTCTC 1 cut(s) 623
Bso31I GGTCTC 2 cut(s) 29, 294
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 5 cut(s) 132, 231, 654, 670, 724
BspACI CCGC 2 cut(s) 48, 801
BspCNI CTCAG 3 cut(s) 43, 121, 672
BspLI GGNNCC 1 cut(s) 796
BspMI ACCTGC 3 cut(s) 372, 540, 806
BspPI GGATC 1 cut(s) 649
BspTNI GGTCTC 2 cut(s) 29, 294
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 796
BssECI CCNNGG 2 cut(s) 515, 582
BssMI GATC 5 cut(s) 132, 231, 654, 670, 724
BssT1I CCWWGG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 2 cut(s) 171, 341
BstC8I GCNNGC 3 cut(s) 48, 334, 750
BstDEI CTNAG 3 cut(s) 51, 129, 659
BstENI CCTNNNNNAGG 1 cut(s) 662
BstF5I GGATG 2 cut(s) 197, 652
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 5 cut(s) 135, 234, 657, 673, 727
BstMAI GTCTC 3 cut(s) 29, 294, 623
BstMBI GATC 5 cut(s) 132, 231, 654, 670, 724
BstMWI GCNNNNNNNGC 2 cut(s) 306, 360
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 684
BstX2I RGATCY 2 cut(s) 132, 654
BstYI RGATCY 2 cut(s) 132, 654
BtsCI GGATG 2 cut(s) 197, 652
BtsI GCAGTG 2 cut(s) 62, 307
BtsIMutI CAGTG 5 cut(s) 62, 126, 167, 307, 789
BveI ACCTGC 3 cut(s) 372, 540, 806
Cac8I GCNNGC 3 cut(s) 48, 334, 750
CfoI GCGC 1 cut(s) 748
Csp6I GTAC 1 cut(s) 804
CviAII CATG 6 cut(s) 84, 188, 405, 596, 641, 749
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 3 cut(s) 51, 129, 659
DpnI GATC 5 cut(s) 134, 233, 656, 672, 726
DpnII GATC 5 cut(s) 132, 231, 654, 670, 724
Eco130I CCWWGG 1 cut(s) 515
Eco31I GGTCTC 2 cut(s) 29, 294
EcoNI CCTNNNNNAGG 1 cut(s) 662
EcoRI GAATTC 2 cut(s) 322, 573
EcoRII CCWGG 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 515
EcoT22I ATGCAT 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 515
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 6 cut(s) 87, 191, 408, 599, 644, 752
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FatI CATG 6 cut(s) 83, 187, 404, 595, 640, 748
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 184, 659
Fsp4HI GCNGC 1 cut(s) 6
FspAI RTGCGCAY 1 cut(s) 747
FspI TGCGCA 1 cut(s) 747
GlaI GCGC 1 cut(s) 747
GluI GCNGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 748
Hin1II CATG 6 cut(s) 87, 191, 408, 599, 644, 752
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 2 cut(s) 254, 474
HphI GGTGA 2 cut(s) 174, 629
Hpy166II GTNNAC 3 cut(s) 195, 344, 440
Hpy188I TCNGA 4 cut(s) 140, 328, 424, 818
Hpy188III TCNNGA 4 cut(s) 373, 394, 674, 728
Hpy8I GTNNAC 3 cut(s) 195, 344, 440
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 5 cut(s) 133, 211, 602, 602, 767
HpyCH4III ACNGT 2 cut(s) 171, 341
HpyCH4V TGCA 6 cut(s) 336, 344, 495, 599, 752, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 306, 360
HpyF3I CTNAG 3 cut(s) 51, 129, 659
Hsp92II CATG 6 cut(s) 87, 191, 408, 599, 644, 752
HspAI GCGC 1 cut(s) 746
Kzo9I GATC 5 cut(s) 132, 231, 654, 670, 724
LmnI GCTCC 1 cut(s) 378
LweI GCATC 2 cut(s) 733, 751
MaeIII GTNAC 3 cut(s) 100, 180, 302
MalI GATC 5 cut(s) 134, 233, 656, 672, 726
MboI GATC 5 cut(s) 132, 231, 654, 670, 724
MboII GAAGA 9 cut(s) 127, 241, 263, 286, 689, 710, 713, 743, 752
MflI RGATCY 2 cut(s) 132, 654
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 5 cut(s) 160, 277, 322, 486, 573
MmeI TCCRAC 2 cut(s) 46, 448
Mph1103I ATGCAT 1 cut(s) 601
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 3 cut(s) 153, 435, 645
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 584
MvaI CCWGG 1 cut(s) 584
MwoI GCNNNNNNNGC 2 cut(s) 306, 360
NdeII GATC 5 cut(s) 132, 231, 654, 670, 724
NlaIII CATG 6 cut(s) 87, 191, 408, 599, 644, 752
NlaIV GGNNCC 1 cut(s) 796
NmuCI GTSAC 3 cut(s) 100, 180, 302
NsbI TGCGCA 1 cut(s) 747
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 1 cut(s) 752
PaeI GCATGC 1 cut(s) 752
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PfeI GAWTC 2 cut(s) 254, 474
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 796
PsrI GAACNNNNNNTAC 2 cut(s) 787, 819
PsuI RGATCY 2 cut(s) 132, 654
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
RseI CAYNNNNRTG 3 cut(s) 153, 435, 645
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 132, 231, 654, 670, 724
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 2 cut(s) 733, 751
SmiMI CAYNNNNRTG 3 cut(s) 153, 435, 645
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
SphI GCATGC 1 cut(s) 752
Sse9I AATT 5 cut(s) 160, 277, 322, 486, 573
SsiI CCGC 2 cut(s) 48, 801
SspI AATATT 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 582
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 2 cut(s) 171, 341
TaqI TCGA 1 cut(s) 69
TasI AATT 5 cut(s) 160, 277, 322, 486, 573
TfiI GAWTC 2 cut(s) 254, 474
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 5 cut(s) 69, 133, 174, 307, 796
TseFI GTSAC 3 cut(s) 100, 180, 302
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 100, 180, 302
TspDTI ATGAA 9 cut(s) 137, 303, 335, 584, 622, 663, 711, 753, 786
TspRI CASTG 5 cut(s) 69, 133, 174, 307, 796
VneI GTGCAC 1 cut(s) 342
XagI CCTNNNNNAGG 1 cut(s) 662
XapI RAATTY 2 cut(s) 322, 573
XceI RCATGY 1 cut(s) 752
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.