RLG00000034369

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011240
Physical Location & Seq
Reverse (-)
41579763 .. 41580710
948 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034369

Sequence Viewer

Length: 948 bp
ATGGCTGCCTGTGGAAGCCTCCAACACATCTTTGAGACCCCATTGCCCGCCGAGAACCCAACACTGCTCGACCCCCTCTCCTCATGGAACATTCAGCCTGTCACACCCATCAACAACTCGTCCTTCACTGAGATCTTCGGAGAGCTTCATTTCAATGACAATTCTCCACTGTCATCATCATCACCACCTCATGTGTCAACATCCTTCTCATCATCATCTTTGGTCGATTTTGATTCACAACCCAAGATTATTAAGGAGTGCAATGGCAACAAAAATGGGGAGACTGACCAGAAGATCAACCCCGTATCAAAGGAAGAATCTTTTTTAAGCACAGAGAAGAACTACAACAGGTCTCATAAAAGCAGTGACAGCTTTTCATCAATGAATTCAGAAAGCTTGCAACTGTGCACAGAGGGGCTTGGTTTTGAGAGCTCAGGCGATGTTGAGGACTTGAGGAGTAGCAACGTGAGCGAAGAACGGCAAAATATTCAGGAGGAGCAGGTTAGTTTCACGACAAAGCCATGTTATATGGCAACATCAGATAGTCATTTTTGTGGACATAGGAAGTCAAGGAGTGCTGGTGTTGGAGGATTCCCTCCACCAATTTCTTGCATAAGCAAGAGTGGGAAGCCTTGGGTTTGCTTCAAGTCTTATAGGCACAACGGCAGGTTTGTCCTCAAAGAAATAAGAATTCCCACCCAGGAGTTCCTTCATGCATACAGAGAAGGTGGTCGTCTCAAGCTGAACTTCATTCACCATGAGGATGAACAGATCCTCAGCGAGGTAGATCGGGAAGACGACGACGATGATGATGATGATGATGATGATGAAGATTGTGATGATAATACTGACGATCAGGAAGAAAATGAAGATGAGCATGCAGATGAAGAGGCAGTAAATGAAGGAAATGAGGCGAGCACTGGAACCTGCAGTACAAATGAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

316

Amino Acids

35.09

Weight (kDa)

4.39

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 198 - 250 8e-22 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 490, 657, 935
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 766
AcsI RAATTY 2 cut(s) 385, 690
AfaI GTAC 1 cut(s) 934
AfiI CCNNNNNNNGG 1 cut(s) 781
AgsI TTSAA 2 cut(s) 154, 646
AjnI CCWGG 1 cut(s) 699
AluBI AGCT 5 cut(s) 145, 372, 396, 432, 742
AluI AGCT 5 cut(s) 145, 372, 396, 432, 742
Alw21I GWGCWC 3 cut(s) 410, 434, 920
Alw26I GTCTC 4 cut(s) 29, 275, 357, 740
Alw44I GTGCAC 1 cut(s) 406
AlwI GGATC 1 cut(s) 766
ApaLI GTGCAC 1 cut(s) 406
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 385, 690
AsuHPI GGTGA 2 cut(s) 174, 746
BaeGI GKGCMC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 801
Bbv12I GWGCWC 3 cut(s) 410, 434, 920
BbvCI CCTCAGC 1 cut(s) 776
BccI CCATC 1 cut(s) 116
BceAI ACGGC 2 cut(s) 494, 679
BciT130I CCWGG 1 cut(s) 701
BcoDI GTCTC 4 cut(s) 29, 275, 357, 740
BfmI CTRYAG 1 cut(s) 928
BfuAI ACCTGC 3 cut(s) 490, 657, 935
BglII AGATCT 1 cut(s) 132
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 701
BmiI GGNNCC 1 cut(s) 925
BmrFI CCNGG 1 cut(s) 701
BpiI GAAGAC 1 cut(s) 801
Bpu10I CCTNAGC 2 cut(s) 433, 776
BpuEI CTTGAG 2 cut(s) 472, 722
BsaI GGTCTC 2 cut(s) 29, 357
BsaJI CCNNGG 2 cut(s) 632, 699
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 565, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse1I ACTGG 1 cut(s) 925
Bse3DI GCAATG 2 cut(s) 41, 268
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 2 cut(s) 632, 699
BseGI GGATG 2 cut(s) 200, 769
BseLI CCNNNNNNNGG 1 cut(s) 781
BseMI GCAATG 2 cut(s) 41, 268
BseMII CTCAG 3 cut(s) 120, 447, 790
BseNI ACTGG 1 cut(s) 925
BseRI GAGGAG 3 cut(s) 70, 469, 509
BseSI GKGCMC 1 cut(s) 410
BsiHKAI GWGCWC 3 cut(s) 410, 434, 920
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 4 cut(s) 29, 275, 357, 740
BsmBI CGTCTC 1 cut(s) 740
Bso31I GGTCTC 2 cut(s) 29, 357
Bsp1286I GDGCHC 3 cut(s) 410, 434, 920
Bsp143I GATC 5 cut(s) 132, 294, 771, 787, 853
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 3 cut(s) 121, 446, 789
BspLI GGNNCC 1 cut(s) 925
BspMAI CTGCAG 1 cut(s) 932
BspMI ACCTGC 3 cut(s) 490, 657, 935
BspPI GGATC 1 cut(s) 766
BspTNI GGTCTC 2 cut(s) 29, 357
BsrDI GCAATG 2 cut(s) 41, 268
BsrI ACTGG 1 cut(s) 925
BssECI CCNNGG 2 cut(s) 632, 699
BssMI GATC 5 cut(s) 132, 294, 771, 787, 853
BssT1I CCWWGG 1 cut(s) 632
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 2 cut(s) 171, 405
Bst6I CTCTTC 1 cut(s) 882
BstC8I GCNNGC 4 cut(s) 48, 398, 879, 916
BstDEI CTNAG 3 cut(s) 129, 433, 776
BstENI CCTNNNNNAGG 1 cut(s) 779
BstF5I GGATG 2 cut(s) 200, 769
BstKTI GATC 5 cut(s) 135, 297, 774, 790, 856
BstMAI GTCTC 4 cut(s) 29, 275, 357, 740
BstMBI GATC 5 cut(s) 132, 294, 771, 787, 853
BstMWI GCNNNNNNNGC 2 cut(s) 369, 468
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 1 cut(s) 881
BstSCI CCNGG 1 cut(s) 699
BstSFI CTRYAG 1 cut(s) 928
BstSLI GKGCMC 1 cut(s) 410
BstV2I GAAGAC 1 cut(s) 801
BstX2I RGATCY 2 cut(s) 132, 771
BstYI RGATCY 2 cut(s) 132, 771
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 200, 769
BtsI GCAGTG 2 cut(s) 62, 370
BtsIMutI CAGTG 5 cut(s) 62, 126, 167, 370, 918
BveI ACCTGC 3 cut(s) 490, 657, 935
Cac8I GCNNGC 4 cut(s) 48, 398, 879, 916
Csp6I GTAC 1 cut(s) 933
CviAII CATG 6 cut(s) 84, 191, 522, 713, 758, 878
CviQI GTAC 1 cut(s) 933
DdeI CTNAG 3 cut(s) 129, 433, 776
DpnI GATC 5 cut(s) 134, 296, 773, 789, 855
DpnII GATC 5 cut(s) 132, 294, 771, 787, 853
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Ecl136II GAGCTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 632
Eco24I GRGCYC 1 cut(s) 434
Eco31I GGTCTC 2 cut(s) 29, 357
Eco53kI GAGCTC 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 432
EcoNI CCTNNNNNAGG 1 cut(s) 779
EcoRI GAATTC 2 cut(s) 385, 690
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 632
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 632
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 6 cut(s) 87, 194, 525, 716, 761, 881
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FatI CATG 6 cut(s) 83, 190, 521, 712, 757, 877
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 187, 776
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 6 cut(s) 87, 194, 525, 716, 761, 881
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 394
HinfI GANTC 3 cut(s) 233, 317, 591
HphI GGTGA 2 cut(s) 174, 746
Hpy166II GTNNAC 3 cut(s) 198, 408, 557
Hpy188I TCNGA 4 cut(s) 140, 391, 541, 947
Hpy188III TCNNGA 4 cut(s) 491, 511, 791, 857
Hpy8I GTNNAC 3 cut(s) 198, 408, 557
Hpy99I CGWCG 2 cut(s) 803, 806
HpyAV CCTTC 5 cut(s) 133, 214, 719, 719, 896
HpyCH4III ACNGT 2 cut(s) 171, 405
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 7 cut(s) 261, 400, 408, 612, 716, 881, 930
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 468
HpyF3I CTNAG 3 cut(s) 129, 433, 776
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 6 cut(s) 87, 194, 525, 716, 761, 881
Kzo9I GATC 5 cut(s) 132, 294, 771, 787, 853
LmnI GCTCC 1 cut(s) 496
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 100, 365
MalI GATC 5 cut(s) 134, 296, 773, 789, 855
MboI GATC 5 cut(s) 132, 294, 771, 787, 853
MflI RGATCY 2 cut(s) 132, 771
MhlI GDGCHC 3 cut(s) 410, 434, 920
MluCI AATT 4 cut(s) 160, 385, 603, 690
MmeI TCCRAC 2 cut(s) 46, 565
Mph1103I ATGCAT 1 cut(s) 718
MseI TTAA 2 cut(s) 252, 326
MslI CAYNNNNRTG 4 cut(s) 153, 552, 762, 882
MspR9I CCNGG 1 cut(s) 701
MvaI CCWGG 1 cut(s) 701
MwoI GCNNNNNNNGC 2 cut(s) 369, 468
NdeII GATC 5 cut(s) 132, 294, 771, 787, 853
NlaIII CATG 6 cut(s) 87, 194, 525, 716, 761, 881
NlaIV GGNNCC 1 cut(s) 925
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 100, 365
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 1 cut(s) 881
PaeI GCATGC 1 cut(s) 881
PfeI GAWTC 3 cut(s) 233, 317, 591
PkrI GCNGC 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 925
PsrI GAACNNNNNNTAC 2 cut(s) 916, 948
PstI CTGCAG 1 cut(s) 932
PsuI RGATCY 2 cut(s) 132, 771
RsaI GTAC 1 cut(s) 934
RsaNI GTAC 1 cut(s) 933
RseI CAYNNNNRTG 4 cut(s) 153, 552, 762, 882
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 2 cut(s) 252, 326
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 132, 294, 771, 787, 853
ScrFI CCNGG 1 cut(s) 701
SduI GDGCHC 3 cut(s) 410, 434, 920
SfcI CTRYAG 1 cut(s) 928
SmiMI CAYNNNNRTG 4 cut(s) 153, 552, 762, 882
SmlI CTYRAG 2 cut(s) 451, 737
SmoI CTYRAG 2 cut(s) 451, 737
SphI GCATGC 1 cut(s) 881
Sse9I AATT 4 cut(s) 160, 385, 603, 690
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 487
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 699
StyI CCWWGG 1 cut(s) 632
TaaI ACNGT 2 cut(s) 171, 405
TaiI ACGT 1 cut(s) 468
TaqI TCGA 2 cut(s) 69, 225
TasI AATT 4 cut(s) 160, 385, 603, 690
TatI WGTACW 1 cut(s) 932
TfiI GAWTC 3 cut(s) 233, 317, 591
Tru1I TTAA 2 cut(s) 252, 326
Tru9I TTAA 2 cut(s) 252, 326
TscAI CASTG 5 cut(s) 69, 133, 174, 370, 925
TseFI GTSAC 2 cut(s) 100, 365
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 100, 365
TspRI CASTG 5 cut(s) 69, 133, 174, 370, 925
VneI GTGCAC 1 cut(s) 406
XagI CCTNNNNNAGG 1 cut(s) 779
XapI RAATTY 2 cut(s) 385, 690
XceI RCATGY 1 cut(s) 881
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.