Rh5AG305000

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011240
Physical Location & Seq
Reverse (-)
43518198 .. 43519594
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG305000.1

Sequence Viewer

Length: 396 bp
ATGAATTCAGAAAGCTTGCAACTGTGCACAGAGGGGCTTGGTTTTGAGAGCTCAGGCGATGTTGAGGACCTGAGGAGTAGCAACGTCAGGGAAGAATGGCAAAATATTCAAGAGGAGCAGGTTAGTTTCACGACAAAGCCATGTTATATGGCAACATCAGATAATCATTTTTGTGGACATAAGAAGTCAAGGAGTGCTGGTGTTGGAGGATTCCCTCCACCAATTTCTTGCATAAGCAAGAGTGGGAAGCCTTGGGTTTGCTTCAAGTCTTATAGGCACAACGGCAGGAAAATAGAAGGAAATGTCATAGTAAGTGCCAAGAGCCCTCAGTCTAGGGGAATCCATGTTTTGCACATTAGAACCGATCAAAATAAGCCAACTGTGGCAGTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

131

Amino Acids

14.45

Weight (kDa)

8.65

Isoelectric Point (pI)

68.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 71 - 96 1.3e-07 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 4
AgsI TTSAA 2 cut(s) 110, 265
AluBI AGCT 2 cut(s) 15, 51
AluI AGCT 2 cut(s) 15, 51
Alw21I GWGCWC 2 cut(s) 29, 53
Alw44I GTGCAC 1 cut(s) 25
ApaLI GTGCAC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 29
BanII GRGCYC 2 cut(s) 53, 326
Bbv12I GWGCWC 2 cut(s) 29, 53
BceAI ACGGC 1 cut(s) 298
BfaI CTAG 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bse21I CCTNAGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 251
BseMII CTCAG 3 cut(s) 62, 66, 341
BseRI GAGGAG 2 cut(s) 88, 128
BseSI GKGCMC 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 29, 53
Bsp1286I GDGCHC 3 cut(s) 29, 53, 326
Bsp143I GATC 1 cut(s) 364
BspCNI CTCAG 3 cut(s) 63, 65, 340
BspMI ACCTGC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 2 cut(s) 24, 382
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 52, 71, 327
BstKTI GATC 1 cut(s) 367
BstMBI GATC 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 29
Bsu36I CCTNAGG 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 2 cut(s) 141, 344
CviJI RGCY 7 cut(s) 15, 37, 51, 139, 250, 324, 376
CviKI_1 RGCY 7 cut(s) 15, 37, 51, 139, 250, 324, 376
DdeI CTNAG 3 cut(s) 52, 71, 327
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
Ecl136II GAGCTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 2 cut(s) 53, 326
Eco47I GGWCC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 2 cut(s) 53, 326
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 2 cut(s) 144, 347
FaiI YATR 9 cut(s) 142, 147, 149, 180, 233, 273, 308, 345, 394
FatI CATG 2 cut(s) 140, 343
FriOI GRGCYC 2 cut(s) 53, 326
FspBI CTAG 1 cut(s) 333
Hin1II CATG 2 cut(s) 144, 347
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 210, 339
Hpy166II GTNNAC 2 cut(s) 27, 176
Hpy188I TCNGA 2 cut(s) 10, 160
Hpy188III TCNNGA 2 cut(s) 110, 130
Hpy8I GTNNAC 2 cut(s) 27, 176
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 24, 382
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 4 cut(s) 19, 27, 231, 352
HpyF3I CTNAG 3 cut(s) 52, 71, 327
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 144, 347
Kzo9I GATC 1 cut(s) 364
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 39, 73, 83, 104, 183, 271
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 3 cut(s) 29, 53, 326
MluCI AATT 2 cut(s) 4, 222
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 7 cut(s) 25, 58, 66, 106, 200, 225, 336
MslI CAYNNNNRTG 1 cut(s) 171
NdeII GATC 1 cut(s) 364
NlaIII CATG 2 cut(s) 144, 347
PfeI GAWTC 2 cut(s) 210, 339
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 67
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 1 cut(s) 67
SduI GDGCHC 3 cut(s) 29, 53, 326
SetI ASST 5 cut(s) 17, 53, 72, 87, 123
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 2 cut(s) 4, 222
SspI AATATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 333
SstI GAGCTC 1 cut(s) 53
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 24, 382
TaiI ACGT 1 cut(s) 87
TasI AATT 2 cut(s) 4, 222
TfiI GAWTC 2 cut(s) 210, 339
TscAI CASTG 1 cut(s) 393
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 393
VneI GTGCAC 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.