Prupe.6G132300_v2.0.a1

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011240
Physical Location & Seq
Reverse (-)
10434833 .. 10437219
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G132300.1

Sequence Viewer

Length: 960 bp
ATGGCTGCCTGTGGAAGCCTCCAACACATCTTTGAAAACCCTAAATTACCTGAGAACCCAACAACACTTCTTGAATCCTTCTCCTCACCATGGAACCAAATCAAGCCTCTTAATAAATCATTATCCATTCCTCCTGAGAATTCATCATCCTTCACTGAGATCTTTGGTGAGCTTCATTTCAAAGAGAACATCAGTTCTCATTTGATGTCCTCCTCATCTTCATCCCCATCTTTGGTAGACTTTGATGTTTCACAACCCAAGATTGAAAAAGAAGAAGAATCCAATATTGACAACAAGAATGAGGAGAAGAACAATTACCAGAAAATCCCATCAAAGGAATCCTTTCCAAGCACCCCAAGGAGTTCCAATTACAACAGATCTCATAAAAGCAGTGATAGCTTTTCATCAATGAATTCAGAGAGCTTGCAGTTCTGCACAGAGGGACTTGGATTTGAAAGCTCAGATGAGGTTGAGGACTTGATCAGGACTAGTGATCAAGATAATTGGCAGATTAATATGCAAGAGGAGAAGGTTAGCTTTGCAAAGCAATATTTTCCAATATCAGAAATGAATGGTTGTGGTGGTGAATCTAGGAGGTCAAGGACTAGTGTTGGGGGATTTCCTCCACCAATTTCTTGTATAAGCAAGAGCGGGAAGCCTTGGGTTTGCTTCAAGTCTTACAGGCAGGATGGCAGATTTGTCCTCAAAGAGATCAGAATTCCCACCCAGGAGTTCCTCCACGCTTACAGAGAAGACGGGCGTCTCAAGCTGCACTTTGTCATGCCCGACGACAAAATTCTAGATGAGGAAAATGAGGAAGATGATGATGTATTAAATGATGAGGAAGAAGAAGAGGAAATTGAAGATGATGATGACCACCAATATCATCTACATGCAGATGATGCTAATGGAATAAATGAGGGAAATGAGCCCAAGACAACAAATGATGAGGTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

320

Amino Acids

36.35

Weight (kDa)

4.53

Isoelectric Point (pI)

69.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 651
AccI GTMKAC 1 cut(s) 237
AciI CCGC 1 cut(s) 651
AcsI RAATTY 4 cut(s) 139, 412, 717, 795
AcyI GRCGYC 1 cut(s) 760
AfaI GTAC 1 cut(s) 954
AfiI CCNNNNNNNGG 3 cut(s) 90, 232, 334
AgsI TTSAA 7 cut(s) 35, 74, 181, 266, 455, 673, 863
AhlI ACTAGT 2 cut(s) 488, 605
AjnI CCWGG 1 cut(s) 726
AluBI AGCT 6 cut(s) 172, 399, 423, 459, 537, 769
AluI AGCT 6 cut(s) 172, 399, 423, 459, 537, 769
Alw26I GTCTC 1 cut(s) 767
ApeKI GCWGC 2 cut(s) 5, 769
ApoI RAATTY 4 cut(s) 139, 412, 717, 795
AseI ATTAAT 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 342
AsuHPI GGTGA 3 cut(s) 78, 179, 596
BanII GRGCYC 1 cut(s) 933
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BbsI GAAGAC 1 cut(s) 759
BbvI GCAGC 1 cut(s) 756
BccI CCATC 3 cut(s) 235, 337, 683
BciT130I CCWGG 1 cut(s) 728
BclI TGATCA 2 cut(s) 480, 493
BcoDI GTCTC 1 cut(s) 767
BcuI ACTAGT 2 cut(s) 488, 605
BfaI CTAG 4 cut(s) 489, 591, 606, 800
BglII AGATCT 2 cut(s) 159, 377
BisI GCNGC 2 cut(s) 6, 770
BlsI GCNGC 2 cut(s) 7, 771
Bme1390I CCNGG 1 cut(s) 728
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 728
BmsI GCATC 1 cut(s) 892
BoxI GACNNNNGTC 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 749
BsaHI GRCGYC 1 cut(s) 760
BsaJI CCNNGG 4 cut(s) 89, 356, 659, 726
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 232, 334
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 4 cut(s) 89, 356, 659, 726
BseGI GGATG 3 cut(s) 146, 221, 694
BseLI CCNNNNNNNGG 3 cut(s) 90, 232, 334
BseMII CTCAG 4 cut(s) 42, 126, 147, 474
BseRI GAGGAG 4 cut(s) 73, 202, 317, 539
BseXI GCAGC 1 cut(s) 756
BsgI GTGCAG 2 cut(s) 418, 755
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 90, 232, 334
BsmAI GTCTC 1 cut(s) 767
BsmBI CGTCTC 1 cut(s) 767
BsmFI GGGAC 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 933
Bsp143I GATC 5 cut(s) 159, 377, 480, 493, 711
Bsp19I CCATGG 1 cut(s) 89
BspACI CCGC 1 cut(s) 651
BspCNI CTCAG 4 cut(s) 43, 127, 148, 473
BspLI GGNNCC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 651
BssECI CCNNGG 4 cut(s) 89, 356, 659, 726
BssMI GATC 5 cut(s) 159, 377, 480, 493, 711
BssNI GRCGYC 1 cut(s) 760
BssT1I CCWWGG 3 cut(s) 89, 356, 659
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 1 cut(s) 957
Bst6I CTCTTC 1 cut(s) 846
BstACI GRCGYC 1 cut(s) 760
BstAPI GCANNNNNTGC 1 cut(s) 902
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 4 cut(s) 51, 135, 156, 460
BstDSI CCRYGG 1 cut(s) 89
BstF5I GGATG 3 cut(s) 146, 221, 694
BstKTI GATC 5 cut(s) 162, 380, 483, 496, 714
BstMAI GTCTC 1 cut(s) 767
BstMBI GATC 5 cut(s) 159, 377, 480, 493, 711
BstMWI GCNNNNNNNGC 3 cut(s) 396, 766, 902
BstNI CCWGG 1 cut(s) 728
BstNSI RCATGY 1 cut(s) 896
BstPAI GACNNNNGTC 1 cut(s) 759
BstSCI CCNGG 1 cut(s) 726
BstV1I GCAGC 1 cut(s) 756
BstV2I GAAGAC 1 cut(s) 759
BstX2I RGATCY 2 cut(s) 159, 377
BstYI RGATCY 2 cut(s) 159, 377
BtgI CCRYGG 1 cut(s) 89
BtsCI GGATG 3 cut(s) 146, 221, 694
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 153, 397
Cac8I GCNNGC 1 cut(s) 425
CseI GACGC 1 cut(s) 749
Csp6I GTAC 1 cut(s) 953
CviAII CATG 3 cut(s) 90, 781, 893
CviQI GTAC 1 cut(s) 953
DdeI CTNAG 4 cut(s) 51, 135, 156, 460
DpnI GATC 5 cut(s) 161, 379, 482, 495, 713
DpnII GATC 5 cut(s) 159, 377, 480, 493, 711
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
Eco130I CCWWGG 3 cut(s) 89, 356, 659
Eco24I GRGCYC 1 cut(s) 933
EcoRI GAATTC 3 cut(s) 139, 412, 717
EcoRII CCWGG 1 cut(s) 726
EcoT14I CCWWGG 3 cut(s) 89, 356, 659
EcoT38I GRGCYC 1 cut(s) 933
ErhI CCWWGG 3 cut(s) 89, 356, 659
Esp3I CGTCTC 1 cut(s) 767
FaeI CATG 3 cut(s) 93, 784, 896
FaiI YATR 6 cut(s) 91, 384, 518, 641, 782, 894
FalI AAGNNNNNCTT 6 cut(s) 326, 358, 521, 553, 758, 790
FaqI GGGAC 1 cut(s) 456
FatI CATG 3 cut(s) 89, 780, 892
FauI CCCGC 1 cut(s) 644
FbaI TGATCA 2 cut(s) 480, 493
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 6, 770
FokI GGATG 3 cut(s) 133, 208, 701
FriOI GRGCYC 1 cut(s) 933
Fsp4HI GCNGC 2 cut(s) 6, 770
FspBI CTAG 4 cut(s) 489, 591, 606, 800
GluI GCNGC 2 cut(s) 6, 770
HgaI GACGC 1 cut(s) 749
Hin1I GRCGYC 1 cut(s) 760
Hin1II CATG 3 cut(s) 93, 784, 896
HinfI GANTC 4 cut(s) 74, 278, 338, 587
HphI GGTGA 3 cut(s) 78, 179, 596
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 4 cut(s) 418, 463, 565, 716
Hpy188III TCNNGA 5 cut(s) 71, 134, 484, 497, 800
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 791
HpyAV CCTTC 3 cut(s) 88, 160, 523
HpyCH4III ACNGT 1 cut(s) 957
HpyCH4V TGCA 6 cut(s) 427, 435, 520, 542, 772, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 766, 902
HpyF3I CTNAG 4 cut(s) 51, 135, 156, 460
Hsp92I GRCGYC 1 cut(s) 760
Hsp92II CATG 3 cut(s) 93, 784, 896
Ksp22I TGATCA 2 cut(s) 480, 493
Kzo9I GATC 5 cut(s) 159, 377, 480, 493, 711
LpnPI CCDG 9 cut(s) 22, 63, 147, 332, 469, 667, 671, 713, 740
Lsp1109I GCAGC 1 cut(s) 756
LweI GCATC 1 cut(s) 892
MaeI CTAG 4 cut(s) 489, 591, 606, 800
MalI GATC 5 cut(s) 161, 379, 482, 495, 713
MbiI CCGCTC 1 cut(s) 651
MboI GATC 5 cut(s) 159, 377, 480, 493, 711
MflI RGATCY 2 cut(s) 159, 377
MhlI GDGCHC 1 cut(s) 933
MmeI TCCRAC 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 3 cut(s) 111, 513, 833
MslI CAYNNNNRTG 2 cut(s) 891, 897
MspR9I CCNGG 1 cut(s) 728
MvaI CCWGG 1 cut(s) 728
MwoI GCNNNNNNNGC 3 cut(s) 396, 766, 902
NcoI CCATGG 1 cut(s) 89
NdeII GATC 5 cut(s) 159, 377, 480, 493, 711
NlaIII CATG 3 cut(s) 93, 784, 896
NlaIV GGNNCC 1 cut(s) 95
NspI RCATGY 1 cut(s) 896
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 4 cut(s) 74, 278, 338, 587
PkrI GCNGC 2 cut(s) 7, 771
PshAI GACNNNNGTC 1 cut(s) 759
PshBI ATTAAT 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 726
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 1 cut(s) 95
PsuI RGATCY 2 cut(s) 159, 377
RsaI GTAC 1 cut(s) 954
RsaNI GTAC 1 cut(s) 953
RseI CAYNNNNRTG 2 cut(s) 891, 897
SaqAI TTAA 3 cut(s) 111, 513, 833
SatI GCNGC 2 cut(s) 6, 770
Sau3AI GATC 5 cut(s) 159, 377, 480, 493, 711
ScrFI CCNGG 1 cut(s) 728
SduI GDGCHC 1 cut(s) 933
SfaNI GCATC 1 cut(s) 892
SmiMI CAYNNNNRTG 2 cut(s) 891, 897
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
SpeI ACTAGT 2 cut(s) 488, 605
SsiI CCGC 1 cut(s) 651
SspI AATATT 2 cut(s) 286, 551
SspMI CTAG 4 cut(s) 489, 591, 606, 800
StyD4I CCNGG 1 cut(s) 726
StyI CCWWGG 3 cut(s) 89, 356, 659
TaaI ACNGT 1 cut(s) 957
TfiI GAWTC 4 cut(s) 74, 278, 338, 587
Tru1I TTAA 3 cut(s) 111, 513, 833
Tru9I TTAA 3 cut(s) 111, 513, 833
TscAI CASTG 2 cut(s) 160, 397
TseI GCWGC 2 cut(s) 5, 769
TspDTI ATGAA 6 cut(s) 132, 164, 210, 393, 425, 584
TspRI CASTG 2 cut(s) 160, 397
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 4 cut(s) 139, 412, 717, 795
XbaI TCTAGA 1 cut(s) 799
XceI RCATGY 1 cut(s) 896
XmiI GTMKAC 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 4 cut(s) 489, 591, 606, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.