Rh5BG313700

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011240
Physical Location & Seq
Reverse (-)
41558169 .. 41559994
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG313700.1

Sequence Viewer

Length: 396 bp
ATGAATTCAGAAAGCTTGCAACTGTGCACAGAGGGGCTTGGTTTTGAGAGCTCAGGCGATGTTGAGGACCTGAGGAGTAGCAACGTCAGGGAAGAATGGCAAAATATTCAAGAGGAGCAGGTTAGTTTCACGACAAAGCCATGTTATATGGCAACATCAGATAATCATTTTTGTGGACATAAGAAGTCAAGGAGTGCTGGTGTTGGAGGATTCCCTCCACCAATTTCTTGCATAAGCAAGAGTGGGAAGCCTTGGGTTTGCTTCAAGTCTTATAGGCACAACGGCAGCCTATTAAGTCAGCTTCTTGATTTATATGCTTCAATATATGTTTGTGAACCAGAATATGGGCAATATTTGGGGAAACTCACAGATATATCTGGATATATCCCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

131

Amino Acids

14.55

Weight (kDa)

5.3

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 71 - 98 2.3e-07 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 344
AcsI RAATTY 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 3 cut(s) 110, 265, 321
AluBI AGCT 3 cut(s) 15, 51, 301
AluI AGCT 3 cut(s) 15, 51, 301
Alw21I GWGCWC 2 cut(s) 29, 53
Alw44I GTGCAC 1 cut(s) 25
ApaLI GTGCAC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 29, 53
BbvI GCAGC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmrI ACTGGG 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 390
Bse21I CCTNAGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 2 cut(s) 62, 66
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 88, 128
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 1 cut(s) 297
BsiHKAI GWGCWC 2 cut(s) 29, 53
BslI CCNNNNNNNGG 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 29, 53
BspCNI CTCAG 2 cut(s) 63, 65
BspMI ACCTGC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 52, 71
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 1 cut(s) 141
CviJI RGCY 7 cut(s) 15, 37, 51, 139, 250, 288, 301
CviKI_1 RGCY 7 cut(s) 15, 37, 51, 139, 250, 288, 301
DdeI CTNAG 2 cut(s) 52, 71
Ecl136II GAGCTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 1 cut(s) 144
FatI CATG 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 1 cut(s) 210
Hpy166II GTNNAC 3 cut(s) 27, 176, 335
Hpy188I TCNGA 2 cut(s) 10, 160
Hpy188III TCNNGA 4 cut(s) 110, 130, 305, 378
Hpy8I GTNNAC 3 cut(s) 27, 176, 335
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 19, 27, 231
HpyF3I CTNAG 2 cut(s) 52, 71
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 144
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 7 cut(s) 39, 73, 83, 104, 183, 351, 363
Lsp1109I GCAGC 1 cut(s) 297
MaeII ACGT 1 cut(s) 84
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 29, 53
MluCI AATT 2 cut(s) 4, 222
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 6 cut(s) 25, 58, 66, 106, 200, 225
MseI TTAA 1 cut(s) 293
MslI CAYNNNNRTG 1 cut(s) 171
NlaIII CATG 1 cut(s) 144
PfeI GAWTC 1 cut(s) 210
PflMI CCANNNNNTGG 1 cut(s) 344
PkrI GCNGC 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 67
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 67
SduI GDGCHC 2 cut(s) 29, 53
SetI ASST 6 cut(s) 17, 53, 72, 87, 123, 303
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 2 cut(s) 4, 222
SspI AATATT 2 cut(s) 106, 353
SstI GAGCTC 1 cut(s) 53
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 1 cut(s) 87
TasI AATT 2 cut(s) 4, 222
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 344
VneI GTGCAC 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.