MD11G1166300.v1.1

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011240
Physical Location & Seq
Reverse (-)
17620527 .. 17621501
975 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1166300.v1.1.491

Sequence Viewer

Length: 975 bp
ATGGCCGCCTGTGGAAGCCTTCATCACATTTTTGAAACCCCATTATCCGATAGCCCAACAACACTTCTTGAATCATTCTCCTCCTCATGGAATCAAATCCAGCCTCTCAAATCATCCAACATTGACAATAATCCATCGTCGACCCTCACTGAGATGTTTGGGGAGCTTCATTTCAAAGAGAATAACAATGTTAATTCTCCAATATTTTCATCACCTTCTATGTCATCCTCCTCGTCCTCATTGACATCTCCGGACGTAGAATTTGACCCTAAAACCAAGATTGAGAAAAATGAGGAGGAGATGAAGAAGATGAATGGCCAGAAGAGCCCCTCACAGGAGTCTTTTTCGAGCAATTACAGTAGGTCTCAGTCCCACAAAAGCTGTGATAGCTTTTCATCAATGAATTCGGAGAGCTTGCAGTTGTGCACGGAGGGACTTGGATTCGAAAGCTCGGACGAGGTTGAGGAACTATTCAAGGAAAGTCCTCCTAGTGATCATGGATACCATGAGGATGAAGAAAACATTACTGTTCAAGAGGAGAAGATTAGTTTTACAAAGCAATATTTTCCAGTATCAGAAATTAGTTATAATAATAATTGTTGTGGTGGTGAATTAGGGTTTAGGAGGTCAAGGAGTACTAGTGTTGGGGGATTCCCTCCGCCGATATCCTGCATAAGCAACAGCGGGAAGCCTTGGGTTTGCTTCAAGTCTTACAGGCATAATGGCAGGTTTGTCCTCAAAGAAATCAGAATCCCCACCCAAGAGTTCTTGCATGCTCACAGGGAAGATGGGCGCCTCAAGCTGCACTTCGTCATGCCCAACGACGAAATTCTAGGTGAGGAAGACAATGACGATGATGATGATCTATCCAACAAGATCGAAGAACAAGAAGAAGAAGAAGATCATCTAGATGCAGATGCTGCTCGTGATTCAATAAATAAAGAAGGAAATGATGAGGCAAAGACAAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

325

Amino Acids

36.44

Weight (kDa)

4.61

Isoelectric Point (pI)

79.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 218 - 270 4.6e-23 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 717
AccB1I GGYRCC 1 cut(s) 792
AccI GTMKAC 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 3 cut(s) 6, 659, 684
AcoI YGGCCR 2 cut(s) 3, 316
AcsI RAATTY 3 cut(s) 260, 403, 828
AcyI GRCGYC 1 cut(s) 793
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 2 cut(s) 87, 334
AgsI TTSAA 7 cut(s) 35, 71, 175, 475, 533, 706, 933
AhlI ACTAGT 1 cut(s) 638
AluBI AGCT 6 cut(s) 166, 381, 390, 414, 450, 802
AluI AGCT 6 cut(s) 166, 381, 390, 414, 450, 802
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 1 cut(s) 369
Alw44I GTGCAC 1 cut(s) 424
AlwNI CAGNNNCTG 1 cut(s) 920
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 2 cut(s) 3, 316
ApaLI GTGCAC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 802, 920
ApoI RAATTY 3 cut(s) 260, 403, 828
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspLEI GCGC 1 cut(s) 795
AsuHPI GGTGA 3 cut(s) 204, 620, 848
AsuII TTCGAA 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 318
BanI GGYRCC 1 cut(s) 792
BanII GRGCYC 1 cut(s) 329
BauI CACGAG 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 849
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 2 cut(s) 789, 907
BccI CCATC 2 cut(s) 142, 782
BciVI GTATCC 1 cut(s) 494
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 369
BcuI ACTAGT 1 cut(s) 638
BfaI CTAG 4 cut(s) 489, 639, 833, 908
BfoI RGCGCY 1 cut(s) 796
BfuAI ACCTGC 1 cut(s) 717
BfuI GTATCC 1 cut(s) 494
BisI GCNGC 3 cut(s) 6, 803, 921
BlsI GCNGC 3 cut(s) 7, 804, 922
BmcAI AGTACT 1 cut(s) 637
BmiI GGNNCC 1 cut(s) 794
BmsI GCATC 2 cut(s) 901, 907
BpiI GAAGAC 1 cut(s) 849
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 782
BsaBI GATNNNNATC 1 cut(s) 861
BsaHI GRCGYC 1 cut(s) 793
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 692
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 334
Bse1I ACTGG 1 cut(s) 569
Bse8I GATNNNNATC 1 cut(s) 861
BseAI TCCGGA 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 3 cut(s) 113, 224, 517
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 2 cut(s) 87, 334
BseMII CTCAG 2 cut(s) 141, 380
BseNI ACTGG 1 cut(s) 569
BseRI GAGGAG 6 cut(s) 70, 73, 220, 308, 311, 551
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 2 cut(s) 789, 907
BsgI GTGCAG 1 cut(s) 788
BshFI GGCC 2 cut(s) 5, 318
BshNI GGYRCC 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 428
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 2 cut(s) 355, 447
BslI CCNNNNNNNGG 2 cut(s) 87, 334
BsmAI GTCTC 1 cut(s) 369
BsmFI GGGAC 2 cut(s) 355, 447
BsnI GGCC 2 cut(s) 5, 318
Bso31I GGTCTC 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 329, 428
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 4 cut(s) 493, 862, 876, 901
BspACI CCGC 3 cut(s) 6, 659, 684
BspANI GGCC 2 cut(s) 5, 318
BspCNI CTCAG 2 cut(s) 142, 379
BspEI TCCGGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 794
BspMI ACCTGC 1 cut(s) 717
BspQI GCTCTTC 1 cut(s) 317
BspT104I TTCGAA 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 792
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 569
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 4 cut(s) 493, 862, 876, 901
BssNI GRCGYC 1 cut(s) 793
BssSI CACGAG 1 cut(s) 924
BssT1I CCWWGG 1 cut(s) 692
Bst2BI CACGAG 1 cut(s) 924
Bst4CI ACNGT 2 cut(s) 359, 529
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 793
BstAPI GCANNNNNTGC 1 cut(s) 920
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 416, 774
BstDEI CTNAG 2 cut(s) 150, 366
BstF5I GGATG 3 cut(s) 113, 224, 517
BstH2I RGCGCY 1 cut(s) 796
BstHHI GCGC 1 cut(s) 795
BstKTI GATC 4 cut(s) 496, 865, 879, 904
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 4 cut(s) 493, 862, 876, 901
BstMWI GCNNNNNNNGC 4 cut(s) 324, 387, 799, 920
BstNSI RCATGY 1 cut(s) 776
BstSLI GKGCMC 1 cut(s) 428
BstV1I GCAGC 2 cut(s) 789, 907
BstV2I GAAGAC 1 cut(s) 849
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 2 cut(s) 5, 318
BtsCI GGATG 3 cut(s) 113, 224, 517
BtsIMutI CAGTG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 717
Cac8I GCNNGC 2 cut(s) 416, 774
CaiI CAGNNNCTG 1 cut(s) 920
CfoI GCGC 1 cut(s) 795
Csp6I GTAC 1 cut(s) 636
CviAII CATG 5 cut(s) 87, 497, 506, 773, 814
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 2 cut(s) 150, 366
DinI GGCGCC 1 cut(s) 794
DpnI GATC 4 cut(s) 495, 864, 878, 903
DpnII GATC 4 cut(s) 493, 862, 876, 901
EaeI YGGCCR 2 cut(s) 3, 316
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 648
Eco130I CCWWGG 1 cut(s) 692
Eco24I GRGCYC 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 666
EcoRI GAATTC 1 cut(s) 403
EcoRV GATATC 1 cut(s) 666
EcoT14I CCWWGG 1 cut(s) 692
EcoT38I GRGCYC 1 cut(s) 329
EgeI GGCGCC 1 cut(s) 794
EheI GGCGCC 1 cut(s) 794
ErhI CCWWGG 1 cut(s) 692
FaeI CATG 5 cut(s) 90, 500, 509, 776, 817
FaiI YATR 9 cut(s) 88, 221, 498, 507, 588, 674, 720, 774, 815
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FaqI GGGAC 2 cut(s) 355, 447
FatI CATG 5 cut(s) 86, 496, 505, 772, 813
FauI CCCGC 1 cut(s) 677
FbaI TGATCA 1 cut(s) 493
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 3 cut(s) 6, 803, 921
FokI GGATG 3 cut(s) 100, 211, 524
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 3 cut(s) 6, 803, 921
FspBI CTAG 4 cut(s) 489, 639, 833, 908
GlaI GCGC 1 cut(s) 794
GluI GCNGC 3 cut(s) 6, 803, 921
HaeII RGCGCY 1 cut(s) 796
HaeIII GGCC 2 cut(s) 5, 318
HapII CCGG 1 cut(s) 251
HhaI GCGC 1 cut(s) 795
Hin1I GRCGYC 1 cut(s) 793
Hin1II CATG 5 cut(s) 90, 500, 509, 776, 817
Hin6I GCGC 1 cut(s) 793
HinP1I GCGC 1 cut(s) 793
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 7 cut(s) 71, 91, 338, 441, 651, 750, 929
HpaII CCGG 1 cut(s) 251
HphI GGTGA 3 cut(s) 204, 620, 848
Hpy166II GTNNAC 2 cut(s) 141, 426
Hpy188I TCNGA 5 cut(s) 49, 409, 454, 577, 749
Hpy188III TCNNGA 5 cut(s) 68, 251, 533, 908, 926
Hpy8I GTNNAC 2 cut(s) 141, 426
Hpy99I CGWCG 2 cut(s) 142, 827
HpyAV CCTTC 3 cut(s) 29, 225, 938
HpyCH4III ACNGT 2 cut(s) 359, 529
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 6 cut(s) 418, 426, 672, 772, 805, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 324, 387, 799, 920
HpyF3I CTNAG 2 cut(s) 150, 366
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 793
Hsp92II CATG 5 cut(s) 90, 500, 509, 776, 817
HspAI GCGC 1 cut(s) 793
KasI GGCGCC 1 cut(s) 792
Kpn2I TCCGGA 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 4 cut(s) 493, 862, 876, 901
LguI GCTCTTC 1 cut(s) 317
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 2 cut(s) 789, 907
LweI GCATC 2 cut(s) 901, 907
MaeI CTAG 4 cut(s) 489, 639, 833, 908
MaeII ACGT 1 cut(s) 255
MalI GATC 4 cut(s) 495, 864, 878, 903
MboI GATC 4 cut(s) 493, 862, 876, 901
MhlI GDGCHC 2 cut(s) 329, 428
MlsI TGGCCA 1 cut(s) 318
MluCI AATT 9 cut(s) 193, 260, 352, 403, 579, 595, 611, 828, 970
MluNI TGGCCA 1 cut(s) 318
Mly113I GGCGCC 1 cut(s) 793
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 2 cut(s) 141, 894
Mox20I TGGCCA 1 cut(s) 318
MroI TCCGGA 1 cut(s) 250
MscI TGGCCA 1 cut(s) 318
MseI TTAA 2 cut(s) 192, 973
MslI CAYNNNNRTG 3 cut(s) 152, 510, 909
Msp20I TGGCCA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 684
MspI CCGG 1 cut(s) 251
MwoI GCNNNNNNNGC 4 cut(s) 324, 387, 799, 920
NarI GGCGCC 1 cut(s) 793
NdeII GATC 4 cut(s) 493, 862, 876, 901
NlaIII CATG 5 cut(s) 90, 500, 509, 776, 817
NlaIV GGNNCC 1 cut(s) 794
NspI RCATGY 1 cut(s) 776
NspV TTCGAA 1 cut(s) 444
PaeI GCATGC 1 cut(s) 776
PciSI GCTCTTC 1 cut(s) 317
PfeI GAWTC 6 cut(s) 71, 91, 441, 651, 750, 929
PkrI GCNGC 3 cut(s) 7, 804, 922
PleI GAGTC 1 cut(s) 346
PluTI GGCGCC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 346
PsiI TTATAA 1 cut(s) 588
PspN4I GGNNCC 1 cut(s) 794
PstNI CAGNNNCTG 1 cut(s) 920
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
RseI CAYNNNNRTG 3 cut(s) 152, 510, 909
SalI GTCGAC 1 cut(s) 139
SapI GCTCTTC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 192, 973
SatI GCNGC 3 cut(s) 6, 803, 921
Sau3AI GATC 4 cut(s) 493, 862, 876, 901
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 1 cut(s) 347
SduI GDGCHC 2 cut(s) 329, 428
SfaNI GCATC 2 cut(s) 901, 907
SfoI GGCGCC 1 cut(s) 794
SfuI TTCGAA 1 cut(s) 444
SmiMI CAYNNNNRTG 3 cut(s) 152, 510, 909
SmlI CTYRAG 1 cut(s) 797
SmoI CTYRAG 1 cut(s) 797
SpeI ACTAGT 1 cut(s) 638
SphI GCATGC 1 cut(s) 776
Sse9I AATT 9 cut(s) 193, 260, 352, 403, 579, 595, 611, 828, 970
SsiI CCGC 3 cut(s) 6, 659, 684
SspDI GGCGCC 1 cut(s) 792
SspI AATATT 2 cut(s) 204, 563
SspMI CTAG 4 cut(s) 489, 639, 833, 908
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 2 cut(s) 359, 529
TaiI ACGT 1 cut(s) 258
TaqI TCGA 4 cut(s) 140, 347, 444, 879
TasI AATT 9 cut(s) 193, 260, 352, 403, 579, 595, 611, 828, 970
TatI WGTACW 1 cut(s) 635
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 6 cut(s) 71, 91, 441, 651, 750, 929
Tru1I TTAA 2 cut(s) 192, 973
Tru9I TTAA 2 cut(s) 192, 973
TscAI CASTG 1 cut(s) 154
TseI GCWGC 2 cut(s) 802, 920
TspDTI ATGAA 8 cut(s) 11, 158, 198, 317, 326, 384, 416, 528
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 1 cut(s) 154
VneI GTGCAC 1 cut(s) 424
XapI RAATTY 3 cut(s) 260, 403, 828
XbaI TCTAGA 1 cut(s) 907
XceI RCATGY 1 cut(s) 776
XmiI GTMKAC 1 cut(s) 140
XspI CTAG 4 cut(s) 489, 639, 833, 908
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.