Rw0G020570

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00938
OG0011240
Physical Location & Seq
Forward (+)
10626 .. 11507
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020570.1

Sequence Viewer

Length: 882 bp
ATGGCTGCCTGTGGAAGCCTCCAACACATCTTTGAGACCCCATTGCCCGCTGAGAACCCAACACTGCTCGACCCCCTCTCCTCATGGAACATTCAGCCTGTCACACCCATCAACAACTCGTCCTTCACTGAGATCTTCGGAGAGCTTCATTTCAATGACAATTCTCCACTGTCATCATCATCACCTCATGTGTCAACATCCTTCTCATCATCATCTTTGGTCGATTTGGATTCACAACCCAAGATTATTAAGGAGTGCAATGGCAACAAAAATGGGGAGACTGACCAGAAGATCAACCCCATATCAAAGGAAGAATCTTTTTTAAGCACAGAGAAGAATTACAACAGGTCTCATAAAAGCAGTGACAGCTTTTCATCAATGAATTCAGAAAGCTTGCAACTGTGCACAGAGGGGCTTGGTTTTGAGAGCTCAGGCGATGTTGAGGACCTGAGGAGTAGCAACGTCAGGGAAGAATGGCAAAATATTCAAGAGGAGCAGGTTAGTTTCACGACAAAGCCATGTTATATGGCAACATCAGATAATCATTTTTGTGGACATAAGAAGTCAAGGAGTGCTGGTGTTGGAGGATTCCCTCCACCAATTTCTTGCATAAGCAAGAGTGGGAAGCCTTGGGTTTGCTTCAAGTCTTATAGGCACAACGGCAGGTTTGTCCTCAAAGAAATAAGAATTCCCACCCAGGAGTTCCTTCATGCATACAGAGAAGGTGGTCGTCTCAAGCTGAACTTCATTCACCATGAGGATGAACAGATCCTCAGCGAGGTAGATCGGGAAGACGATGATACGATGATGAAGAAGATTGTGATGATAATACTGACGATCAGGAAGAAAATGAAGATGCGCATGCAGATGACGATGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

293

Amino Acids

33.14

Weight (kDa)

5.95

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 197 - 249 7.1e-22 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 860
Acc36I ACCTGC 2 cut(s) 487, 654
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 763
AcsI RAATTY 2 cut(s) 382, 687
AfiI CCNNNNNNNGG 1 cut(s) 778
AgsI TTSAA 3 cut(s) 154, 488, 643
AjnI CCWGG 1 cut(s) 696
AluBI AGCT 5 cut(s) 145, 369, 393, 429, 739
AluI AGCT 5 cut(s) 145, 369, 393, 429, 739
Alw21I GWGCWC 2 cut(s) 407, 431
Alw26I GTCTC 4 cut(s) 29, 272, 354, 737
Alw44I GTGCAC 1 cut(s) 403
AlwI GGATC 1 cut(s) 763
ApaLI GTGCAC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 382, 687
AspLEI GCGC 1 cut(s) 861
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 2 cut(s) 174, 743
AvaII GGWCC 1 cut(s) 445
AxyI CCTNAGG 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 2 cut(s) 407, 431
BbvCI CCTCAGC 1 cut(s) 773
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 676
BciT130I CCWGG 1 cut(s) 698
BcoDI GTCTC 4 cut(s) 29, 272, 354, 737
BfuAI ACCTGC 2 cut(s) 487, 654
BglII AGATCT 1 cut(s) 132
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 698
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 698
BmsI GCATC 2 cut(s) 846, 864
BpiI GAAGAC 1 cut(s) 798
Bpu10I CCTNAGC 2 cut(s) 430, 773
BpuEI CTTGAG 1 cut(s) 719
BsaI GGTCTC 2 cut(s) 29, 354
BsaJI CCNNGG 2 cut(s) 629, 696
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 562, 592
Bsc4I CCNNNNNNNGG 1 cut(s) 778
Bse21I CCTNAGG 1 cut(s) 449
Bse3DI GCAATG 2 cut(s) 41, 265
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 2 cut(s) 629, 696
BseGI GGATG 2 cut(s) 197, 766
BseLI CCNNNNNNNGG 1 cut(s) 778
BseMI GCAATG 2 cut(s) 41, 265
BseMII CTCAG 5 cut(s) 42, 120, 440, 444, 787
BseRI GAGGAG 3 cut(s) 70, 466, 506
BseSI GKGCMC 1 cut(s) 407
BsiHKAI GWGCWC 2 cut(s) 407, 431
BslI CCNNNNNNNGG 1 cut(s) 778
BsmAI GTCTC 4 cut(s) 29, 272, 354, 737
BsmBI CGTCTC 1 cut(s) 737
Bso31I GGTCTC 2 cut(s) 29, 354
Bsp1286I GDGCHC 2 cut(s) 407, 431
Bsp143I GATC 5 cut(s) 132, 291, 768, 784, 837
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 5 cut(s) 43, 121, 441, 443, 786
BspMI ACCTGC 2 cut(s) 487, 654
BspPI GGATC 1 cut(s) 763
BspTNI GGTCTC 2 cut(s) 29, 354
BsrDI GCAATG 2 cut(s) 41, 265
BssECI CCNNGG 2 cut(s) 629, 696
BssMI GATC 5 cut(s) 132, 291, 768, 784, 837
BssT1I CCWWGG 1 cut(s) 629
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 2 cut(s) 171, 402
BstC8I GCNNGC 3 cut(s) 48, 395, 863
BstDEI CTNAG 5 cut(s) 51, 129, 430, 449, 773
BstENI CCTNNNNNAGG 1 cut(s) 776
BstF5I GGATG 2 cut(s) 197, 766
BstHHI GCGC 1 cut(s) 861
BstKTI GATC 5 cut(s) 135, 294, 771, 787, 840
BstMAI GTCTC 4 cut(s) 29, 272, 354, 737
BstMBI GATC 5 cut(s) 132, 291, 768, 784, 837
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNI CCWGG 1 cut(s) 698
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 407
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 2 cut(s) 132, 768
BstYI RGATCY 2 cut(s) 132, 768
Bsu36I CCTNAGG 1 cut(s) 449
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 197, 766
BtsI GCAGTG 2 cut(s) 62, 367
BtsIMutI CAGTG 4 cut(s) 62, 126, 167, 367
BveI ACCTGC 2 cut(s) 487, 654
Cac8I GCNNGC 3 cut(s) 48, 395, 863
CfoI GCGC 1 cut(s) 861
Cfr13I GGNCC 1 cut(s) 445
CviAII CATG 6 cut(s) 84, 188, 519, 710, 755, 862
DdeI CTNAG 5 cut(s) 51, 129, 430, 449, 773
DpnI GATC 5 cut(s) 134, 293, 770, 786, 839
DpnII GATC 5 cut(s) 132, 291, 768, 784, 837
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 629
Eco24I GRGCYC 1 cut(s) 431
Eco31I GGTCTC 2 cut(s) 29, 354
Eco47I GGWCC 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 429
Eco81I CCTNAGG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 445
EcoRI GAATTC 2 cut(s) 382, 687
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 1 cut(s) 629
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 629
Esp3I CGTCTC 1 cut(s) 737
FaeI CATG 6 cut(s) 87, 191, 522, 713, 758, 865
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FatI CATG 6 cut(s) 83, 187, 518, 709, 754, 861
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 184, 773
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 6
FspAI RTGCGCAY 1 cut(s) 860
FspI TGCGCA 1 cut(s) 860
GlaI GCGC 1 cut(s) 860
GluI GCNGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 861
Hin1II CATG 6 cut(s) 87, 191, 522, 713, 758, 865
Hin6I GCGC 1 cut(s) 859
HinP1I GCGC 1 cut(s) 859
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 391
HinfI GANTC 3 cut(s) 230, 314, 588
HphI GGTGA 2 cut(s) 174, 743
Hpy166II GTNNAC 3 cut(s) 195, 405, 554
Hpy188I TCNGA 3 cut(s) 140, 388, 538
Hpy188III TCNNGA 4 cut(s) 488, 508, 788, 841
Hpy8I GTNNAC 3 cut(s) 195, 405, 554
HpyAV CCTTC 4 cut(s) 133, 211, 716, 716
HpyCH4III ACNGT 2 cut(s) 171, 402
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 7 cut(s) 258, 397, 405, 609, 713, 865, 877
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 5 cut(s) 51, 129, 430, 449, 773
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 6 cut(s) 87, 191, 522, 713, 758, 865
HspAI GCGC 1 cut(s) 859
Kzo9I GATC 5 cut(s) 132, 291, 768, 784, 837
LmnI GCTCC 1 cut(s) 493
LweI GCATC 2 cut(s) 846, 864
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 100, 362
MalI GATC 5 cut(s) 134, 293, 770, 786, 839
MboI GATC 5 cut(s) 132, 291, 768, 784, 837
MflI RGATCY 2 cut(s) 132, 768
MhlI GDGCHC 2 cut(s) 407, 431
MluCI AATT 5 cut(s) 160, 337, 382, 600, 687
MmeI TCCRAC 2 cut(s) 46, 562
Mph1103I ATGCAT 1 cut(s) 715
MseI TTAA 2 cut(s) 249, 323
MslI CAYNNNNRTG 4 cut(s) 153, 549, 759, 866
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 698
MvaI CCWGG 1 cut(s) 698
MwoI GCNNNNNNNGC 1 cut(s) 366
NdeII GATC 5 cut(s) 132, 291, 768, 784, 837
NlaIII CATG 6 cut(s) 87, 191, 522, 713, 758, 865
NmuCI GTSAC 2 cut(s) 100, 362
NsbI TGCGCA 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 1 cut(s) 865
PaeI GCATGC 1 cut(s) 865
PfeI GAWTC 3 cut(s) 230, 314, 588
PkrI GCNGC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspPI GGNCC 1 cut(s) 445
PspPPI RGGWCCY 1 cut(s) 445
PsuI RGATCY 2 cut(s) 132, 768
RseI CAYNNNNRTG 4 cut(s) 153, 549, 759, 866
SacI GAGCTC 1 cut(s) 431
SaqAI TTAA 2 cut(s) 249, 323
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 132, 291, 768, 784, 837
Sau96I GGNCC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 698
SduI GDGCHC 2 cut(s) 407, 431
SfaNI GCATC 2 cut(s) 846, 864
SinI GGWCC 1 cut(s) 445
SmiMI CAYNNNNRTG 4 cut(s) 153, 549, 759, 866
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
SphI GCATGC 1 cut(s) 865
Sse9I AATT 5 cut(s) 160, 337, 382, 600, 687
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 484
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 696
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 2 cut(s) 171, 402
TaiI ACGT 1 cut(s) 465
TaqI TCGA 2 cut(s) 69, 222
TasI AATT 5 cut(s) 160, 337, 382, 600, 687
TfiI GAWTC 3 cut(s) 230, 314, 588
Tru1I TTAA 2 cut(s) 249, 323
Tru9I TTAA 2 cut(s) 249, 323
TscAI CASTG 4 cut(s) 69, 133, 174, 367
TseFI GTSAC 2 cut(s) 100, 362
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 100, 362
TspDTI ATGAA 8 cut(s) 137, 363, 395, 698, 736, 777, 824, 866
TspRI CASTG 4 cut(s) 69, 133, 174, 367
VneI GTGCAC 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 776
XapI RAATTY 2 cut(s) 382, 687
XceI RCATGY 1 cut(s) 865
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.