Rmu_sc0001035.1_g000082

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001035.1
OG0011240
Physical Location & Seq
Forward (+)
405601 .. 406533
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001035.1_g000082.1.cds

Sequence Viewer

Length: 933 bp
atggctgcctgtggaagcctccaacacatctttgagaccccattgcccgctgagaacccaacactgctcgaccccctctcctcatggaacattcagcctgtgacacccatcaacaactcgtccttcactgagatcttcggagagcttcatttcaatgacaattctccactgtcatcatcatcacctcatgtgtcaacatccttctcatcatcatctttggtcgatttggattcacaacccaagattattaaggagtgcaatggcaacaaaaatggggagactgaccagaagatcaaccccatatcaaaggaagaatcttttttaagcacagagaagaattacaacaggtctcataaaagcagtgacagcttttcatcaatgaattcagaaagcttgcaactgtgcacagaggggcttggttttgagagctcaggcgatgttgaggacctgagcagtagcaacgtcagggaagaatggcaaaatattcaagaggagcaggttagtttcacgacaaagccatgttatatggcaacatcagataatcatttttgtggacataagaagtcaaggagtgctggtgttggaggattccctccaccaatttcttgcataagcaagagtgggaagccttgggtttgcttcaagtcttataggcacaacggcaggtttgtcctcaaagaaataagaattcccacccaggagttccttcatgcatacagagaaggtggtcgtctcaagctgaacttcattcaccatgaggatgaacagatcctcagcgaggtagatcgggaagacgatgatgacgatgatgaagaagattgtgatgataatactgacgatcaggaagaaaatgaagatgagcatgcagatgacgatgcagtaaatgaaggaaataaggcaaacactggaacctgcagtacaaatgaggtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

310

Amino Acids

34.56

Weight (kDa)

4.49

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 487, 654, 920
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 763
AcsI RAATTY 2 cut(s) 382, 687
AfaI GTAC 1 cut(s) 919
AfiI CCNNNNNNNGG 1 cut(s) 778
AgsI TTSAA 3 cut(s) 154, 488, 643
AjnI CCWGG 1 cut(s) 696
AluBI AGCT 5 cut(s) 145, 369, 393, 429, 739
AluI AGCT 5 cut(s) 145, 369, 393, 429, 739
Alw21I GWGCWC 2 cut(s) 407, 431
Alw26I GTCTC 4 cut(s) 29, 272, 354, 737
Alw44I GTGCAC 1 cut(s) 403
AlwI GGATC 1 cut(s) 763
ApaLI GTGCAC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 382, 687
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 2 cut(s) 174, 743
AvaII GGWCC 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 2 cut(s) 407, 431
BbvCI CCTCAGC 1 cut(s) 773
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 676
BciT130I CCWGG 1 cut(s) 698
BcoDI GTCTC 4 cut(s) 29, 272, 354, 737
BfmI CTRYAG 1 cut(s) 913
BfuAI ACCTGC 3 cut(s) 487, 654, 920
BglII AGATCT 1 cut(s) 132
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 698
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 910
BmrFI CCNGG 1 cut(s) 698
BmsI GCATC 1 cut(s) 865
BpiI GAAGAC 1 cut(s) 798
Bpu10I CCTNAGC 3 cut(s) 430, 449, 773
BpuEI CTTGAG 1 cut(s) 719
BsaI GGTCTC 2 cut(s) 29, 354
BsaJI CCNNGG 2 cut(s) 629, 696
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 562, 592
Bsc4I CCNNNNNNNGG 1 cut(s) 778
Bse1I ACTGG 1 cut(s) 910
Bse3DI GCAATG 2 cut(s) 41, 265
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 2 cut(s) 629, 696
BseGI GGATG 2 cut(s) 197, 766
BseLI CCNNNNNNNGG 1 cut(s) 778
BseMI GCAATG 2 cut(s) 41, 265
BseMII CTCAG 5 cut(s) 42, 120, 440, 444, 787
BseNI ACTGG 1 cut(s) 910
BseRI GAGGAG 2 cut(s) 70, 506
BseSI GKGCMC 1 cut(s) 407
BsiHKAI GWGCWC 2 cut(s) 407, 431
BslI CCNNNNNNNGG 1 cut(s) 778
BsmAI GTCTC 4 cut(s) 29, 272, 354, 737
BsmBI CGTCTC 1 cut(s) 737
Bso31I GGTCTC 2 cut(s) 29, 354
Bsp1286I GDGCHC 2 cut(s) 407, 431
Bsp143I GATC 5 cut(s) 132, 291, 768, 784, 838
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 5 cut(s) 43, 121, 441, 443, 786
BspLI GGNNCC 1 cut(s) 910
BspMAI CTGCAG 1 cut(s) 917
BspMI ACCTGC 3 cut(s) 487, 654, 920
BspPI GGATC 1 cut(s) 763
BspTNI GGTCTC 2 cut(s) 29, 354
BsrDI GCAATG 2 cut(s) 41, 265
BsrI ACTGG 1 cut(s) 910
BssECI CCNNGG 2 cut(s) 629, 696
BssMI GATC 5 cut(s) 132, 291, 768, 784, 838
BssT1I CCWWGG 1 cut(s) 629
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 2 cut(s) 171, 402
BstC8I GCNNGC 3 cut(s) 48, 395, 864
BstDEI CTNAG 5 cut(s) 51, 129, 430, 449, 773
BstENI CCTNNNNNAGG 1 cut(s) 776
BstF5I GGATG 2 cut(s) 197, 766
BstKTI GATC 5 cut(s) 135, 294, 771, 787, 841
BstMAI GTCTC 4 cut(s) 29, 272, 354, 737
BstMBI GATC 5 cut(s) 132, 291, 768, 784, 838
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNI CCWGG 1 cut(s) 698
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 1 cut(s) 696
BstSFI CTRYAG 1 cut(s) 913
BstSLI GKGCMC 1 cut(s) 407
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 2 cut(s) 132, 768
BstYI RGATCY 2 cut(s) 132, 768
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 197, 766
BtsI GCAGTG 2 cut(s) 62, 367
BtsIMutI CAGTG 5 cut(s) 62, 126, 167, 367, 903
BveI ACCTGC 3 cut(s) 487, 654, 920
Cac8I GCNNGC 3 cut(s) 48, 395, 864
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 918
CviAII CATG 6 cut(s) 84, 188, 519, 710, 755, 863
CviQI GTAC 1 cut(s) 918
DdeI CTNAG 5 cut(s) 51, 129, 430, 449, 773
DpnI GATC 5 cut(s) 134, 293, 770, 786, 840
DpnII GATC 5 cut(s) 132, 291, 768, 784, 838
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 629
Eco24I GRGCYC 1 cut(s) 431
Eco31I GGTCTC 2 cut(s) 29, 354
Eco47I GGWCC 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 445
EcoRI GAATTC 2 cut(s) 382, 687
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 1 cut(s) 629
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 629
Esp3I CGTCTC 1 cut(s) 737
FaeI CATG 6 cut(s) 87, 191, 522, 713, 758, 866
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FatI CATG 6 cut(s) 83, 187, 518, 709, 754, 862
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 184, 773
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 6 cut(s) 87, 191, 522, 713, 758, 866
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 391
HinfI GANTC 3 cut(s) 230, 314, 588
HphI GGTGA 2 cut(s) 174, 743
Hpy166II GTNNAC 3 cut(s) 195, 405, 554
Hpy188I TCNGA 4 cut(s) 140, 388, 538, 932
Hpy188III TCNNGA 4 cut(s) 488, 508, 788, 842
Hpy8I GTNNAC 3 cut(s) 195, 405, 554
HpyAV CCTTC 5 cut(s) 133, 211, 716, 716, 881
HpyCH4III ACNGT 2 cut(s) 171, 402
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 8 cut(s) 258, 397, 405, 609, 713, 866, 878, 915
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 5 cut(s) 51, 129, 430, 449, 773
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 6 cut(s) 87, 191, 522, 713, 758, 866
Kzo9I GATC 5 cut(s) 132, 291, 768, 784, 838
LmnI GCTCC 1 cut(s) 493
LweI GCATC 1 cut(s) 865
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 100, 362
MalI GATC 5 cut(s) 134, 293, 770, 786, 840
MboI GATC 5 cut(s) 132, 291, 768, 784, 838
MflI RGATCY 2 cut(s) 132, 768
MhlI GDGCHC 2 cut(s) 407, 431
MluCI AATT 5 cut(s) 160, 337, 382, 600, 687
MmeI TCCRAC 2 cut(s) 46, 562
Mph1103I ATGCAT 1 cut(s) 715
MseI TTAA 2 cut(s) 249, 323
MslI CAYNNNNRTG 4 cut(s) 153, 549, 759, 867
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 698
MvaI CCWGG 1 cut(s) 698
MwoI GCNNNNNNNGC 1 cut(s) 366
NdeII GATC 5 cut(s) 132, 291, 768, 784, 838
NlaIII CATG 6 cut(s) 87, 191, 522, 713, 758, 866
NlaIV GGNNCC 1 cut(s) 910
NmuCI GTSAC 2 cut(s) 100, 362
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 1 cut(s) 866
PaeI GCATGC 1 cut(s) 866
PcsI WCGNNNNNNNCGW 1 cut(s) 801
PfeI GAWTC 3 cut(s) 230, 314, 588
PkrI GCNGC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 1 cut(s) 910
PspPI GGNCC 1 cut(s) 445
PspPPI RGGWCCY 1 cut(s) 445
PsrI GAACNNNNNNTAC 2 cut(s) 901, 933
PstI CTGCAG 1 cut(s) 917
PsuI RGATCY 2 cut(s) 132, 768
RsaI GTAC 1 cut(s) 919
RsaNI GTAC 1 cut(s) 918
RseI CAYNNNNRTG 4 cut(s) 153, 549, 759, 867
SacI GAGCTC 1 cut(s) 431
SaqAI TTAA 2 cut(s) 249, 323
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 132, 291, 768, 784, 838
Sau96I GGNCC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 698
SduI GDGCHC 2 cut(s) 407, 431
SfaNI GCATC 1 cut(s) 865
SfcI CTRYAG 1 cut(s) 913
SinI GGWCC 1 cut(s) 445
SmiMI CAYNNNNRTG 4 cut(s) 153, 549, 759, 867
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
SphI GCATGC 1 cut(s) 866
Sse9I AATT 5 cut(s) 160, 337, 382, 600, 687
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 484
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 696
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 2 cut(s) 171, 402
TaiI ACGT 1 cut(s) 465
TaqI TCGA 2 cut(s) 69, 222
TasI AATT 5 cut(s) 160, 337, 382, 600, 687
TatI WGTACW 1 cut(s) 917
TfiI GAWTC 3 cut(s) 230, 314, 588
Tru1I TTAA 2 cut(s) 249, 323
Tru9I TTAA 2 cut(s) 249, 323
TscAI CASTG 5 cut(s) 69, 133, 174, 367, 910
TseFI GTSAC 2 cut(s) 100, 362
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 100, 362
TspDTI ATGAA 9 cut(s) 137, 363, 395, 698, 736, 777, 825, 867, 900
TspRI CASTG 5 cut(s) 69, 133, 174, 367, 910
VneI GTGCAC 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 776
XapI RAATTY 2 cut(s) 382, 687
XceI RCATGY 1 cut(s) 866
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.