MD03G1147600.v1.1

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011240
Physical Location & Seq
Reverse (-)
16299556 .. 16300593
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1147600.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGCTGCCTGTGGAAGCCTCCAACACATCTTTGAAACCCCATTACCCGATACCCCGACAACACTTCTTGAATCCTTCTCCTCCTCATGGAACCAAATCCAGCCTCTCAAATCATCCAACATCGACAATAATCCATCGTCGACCCTCACTGAGATGTTTGGGGAGCTTCATTTCAAAGAGAATAACAATGTTAGTTCTCCAATATTTTCATCACCTTCCATGTCGACCTCCTCCTCCTCCTCATTGACGTTGTCCGACGTAGGATTTGACCCCAAAACCAAGAATGAGAAAATTGAGGAGGAGATGAAGAAGATGAACGGCCAGAAGAGCCCCTCAAAAGAGTCCTTTTCGAGCAATTACAATATGTCTCAGTCTCACAAAAGCAGTGATAGCTTTTCATCAATGAATTCGGAGAGCTTGCAGCTGTGCACGGAGGGACTTGGATTCGAAAGCTCGGACGAGATTGAGGAGTTGTTCAAGGAAAGTCCTCCTAGTGATCATGGATATCGTGAGGATGAAGAAAATATTATTGTCCAAGAGGAGAAGATTAGTTTTACAAAGCAATATTTTCCAATATCAGAAATTAGTTATCATACAAATAATAATTGTTCTGGTGGTAAATTAGGGTTTAGGAGGTCAAGGAGTACTAGTGTTGGGGGATTCCCTCCGCCGATATCTTGCATAAGCAAGAATGGGAAGCCTTGGGTTTGTTTCAAGTCTTACAGGCATGATGGCAGATTTGTCCTCAAAGAAATCAGAATTCCCACACAAGAGTTCTTGCATGCTTACAGGGAAGATGGACGCCTCAAACTGCACTTCGTCATGTCCGACGACGAAATTCTAGGTGAGGAAGACGATGATGTTGATGATGATCTATCATACCACGTCGAAGAAGAAGAGGAAGAAGAACAAGAAGAAGAAGATGAAGATGAAGAACAAGAACAAGAAGATCATCTACATGAAGATGGTGCTCGTGATTCAATAAATAATGAAGGAAATGATGAGGCAAAGACAAATAACTATGAGGTACAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

346

Amino Acids

39.15

Weight (kDa)

4.44

Isoelectric Point (pI)

75.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 221 - 273 5.9e-23 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 140, 224
AciI CCGC 1 cut(s) 668
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 3 cut(s) 406, 759, 837
AcyI GRCGYC 1 cut(s) 802
AfaI GTAC 2 cut(s) 646, 1029
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 6 cut(s) 35, 71, 175, 478, 715, 981
AhlI ACTAGT 1 cut(s) 647
AjiI CACGTC 1 cut(s) 886
AluBI AGCT 5 cut(s) 166, 393, 417, 424, 453
AluI AGCT 5 cut(s) 166, 393, 417, 424, 453
Alw21I GWGCWC 2 cut(s) 431, 973
Alw26I GTCTC 2 cut(s) 372, 378
Alw44I GTGCAC 1 cut(s) 427
AoxI GGCC 1 cut(s) 319
ApaLI GTGCAC 1 cut(s) 427
ApeKI GCWGC 2 cut(s) 5, 421
ApoI RAATTY 3 cut(s) 406, 759, 837
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AsuHPI GGTGA 2 cut(s) 204, 857
AsuII TTCGAA 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 939, 971
BauI CACGAG 1 cut(s) 972
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 2 cut(s) 431, 973
BbvI GCAGC 1 cut(s) 433
BccI CCATC 4 cut(s) 142, 725, 791, 959
BceAI ACGGC 1 cut(s) 334
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 2 cut(s) 372, 378
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 3 cut(s) 492, 648, 842
BisI GCNGC 2 cut(s) 6, 422
BlsI GCNGC 2 cut(s) 7, 423
BmcAI AGTACT 1 cut(s) 646
BmgBI CACGTC 1 cut(s) 886
BmiI GGNNCC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 858
Bpu14I TTCGAA 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 870
BsaHI GRCGYC 1 cut(s) 802
BsaJI CCNNGG 1 cut(s) 701
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 870
BseDI CCNNGG 1 cut(s) 701
BseGI GGATG 2 cut(s) 113, 520
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 2 cut(s) 141, 383
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 1 cut(s) 433
BsgI GTGCAG 1 cut(s) 797
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 2 cut(s) 431, 973
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 2 cut(s) 372, 378
BsmFI GGGAC 1 cut(s) 450
BsnI GGCC 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 3 cut(s) 332, 431, 973
Bsp143I GATC 3 cut(s) 496, 871, 949
BspACI CCGC 1 cut(s) 668
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 142, 382
BspLI GGNNCC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 320
BspT104I TTCGAA 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 701
BssMI GATC 3 cut(s) 496, 871, 949
BssNI GRCGYC 1 cut(s) 802
BssSI CACGAG 1 cut(s) 972
BssT1I CCWWGG 1 cut(s) 701
Bst2BI CACGAG 1 cut(s) 972
Bst6I CTCTTC 2 cut(s) 320, 891
BstACI GRCGYC 1 cut(s) 802
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 419, 783
BstDEI CTNAG 2 cut(s) 150, 369
BstF5I GGATG 2 cut(s) 113, 520
BstKTI GATC 3 cut(s) 499, 874, 952
BstMAI GTCTC 2 cut(s) 372, 378
BstMBI GATC 3 cut(s) 496, 871, 949
BstMWI GCNNNNNNNGC 2 cut(s) 327, 390
BstNSI RCATGY 1 cut(s) 785
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 1 cut(s) 858
BsuRI GGCC 1 cut(s) 321
BtrI CACGTC 1 cut(s) 886
BtsCI GGATG 2 cut(s) 113, 520
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 2 cut(s) 147, 391
Cac8I GCNNGC 2 cut(s) 419, 783
CseI GACGC 1 cut(s) 810
Csp6I GTAC 2 cut(s) 645, 1028
CviAII CATG 8 cut(s) 87, 220, 500, 728, 782, 823, 959, 1035
CviQI GTAC 2 cut(s) 645, 1028
DdeI CTNAG 2 cut(s) 150, 369
DpnI GATC 3 cut(s) 498, 873, 951
DpnII GATC 3 cut(s) 496, 871, 949
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 320, 891
EarI CTCTTC 2 cut(s) 320, 891
EciI GGCGGA 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 701
Eco24I GRGCYC 1 cut(s) 332
Eco32I GATATC 2 cut(s) 506, 675
EcoRI GAATTC 2 cut(s) 406, 759
EcoRV GATATC 2 cut(s) 506, 675
EcoT14I CCWWGG 1 cut(s) 701
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 8 cut(s) 90, 223, 503, 731, 785, 826, 962, 1038
FaqI GGGAC 1 cut(s) 450
FatI CATG 8 cut(s) 86, 219, 499, 727, 781, 822, 958, 1034
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 2 cut(s) 140, 224
Fnu4HI GCNGC 2 cut(s) 6, 422
FokI GGATG 2 cut(s) 100, 527
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 2 cut(s) 6, 422
FspBI CTAG 3 cut(s) 492, 648, 842
GluI GCNGC 2 cut(s) 6, 422
HaeIII GGCC 1 cut(s) 321
HgaI GACGC 1 cut(s) 810
Hin1I GRCGYC 1 cut(s) 802
Hin1II CATG 8 cut(s) 90, 223, 503, 731, 785, 826, 962, 1038
HincII GTYRAC 2 cut(s) 141, 225
HindII GTYRAC 2 cut(s) 141, 225
HinfI GANTC 5 cut(s) 71, 341, 444, 660, 977
HphI GGTGA 2 cut(s) 204, 857
Hpy166II GTNNAC 3 cut(s) 141, 225, 429
Hpy188I TCNGA 6 cut(s) 256, 412, 457, 580, 758, 829
Hpy188III TCNNGA 3 cut(s) 68, 509, 974
Hpy8I GTNNAC 3 cut(s) 141, 225, 429
Hpy99I CGWCG 5 cut(s) 142, 260, 833, 836, 890
HpyAV CCTTC 3 cut(s) 85, 225, 986
HpyCH4IV ACGT 3 cut(s) 248, 258, 885
HpyCH4V TGCA 5 cut(s) 421, 429, 681, 781, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 390
HpyF3I CTNAG 2 cut(s) 150, 369
HpySE526I ACGT 3 cut(s) 248, 258, 885
Hsp92I GRCGYC 1 cut(s) 802
Hsp92II CATG 8 cut(s) 90, 223, 503, 731, 785, 826, 962, 1038
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 3 cut(s) 496, 871, 949
LguI GCTCTTC 1 cut(s) 320
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 22, 113, 335, 597, 709, 775
Lsp1109I GCAGC 1 cut(s) 433
MaeI CTAG 3 cut(s) 492, 648, 842
MaeII ACGT 3 cut(s) 248, 258, 885
MalI GATC 3 cut(s) 498, 873, 951
MboI GATC 3 cut(s) 496, 871, 949
MhlI GDGCHC 3 cut(s) 332, 431, 973
MluCI AATT 8 cut(s) 291, 355, 406, 582, 604, 620, 759, 837
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 4 cut(s) 46, 141, 279, 852
MslI CAYNNNNRTG 3 cut(s) 152, 957, 963
MspA1I CMGCKG 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 327, 390
NdeII GATC 3 cut(s) 496, 871, 949
NlaIII CATG 8 cut(s) 90, 223, 503, 731, 785, 826, 962, 1038
NlaIV GGNNCC 1 cut(s) 92
NspI RCATGY 1 cut(s) 785
NspV TTCGAA 1 cut(s) 447
PaeI GCATGC 1 cut(s) 785
PciSI GCTCTTC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 825
PfeI GAWTC 4 cut(s) 71, 444, 660, 977
PflFI GACNNNGTC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 7, 423
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 92
PsyI GACNNNGTC 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 2 cut(s) 646, 1029
RsaNI GTAC 2 cut(s) 645, 1028
RseI CAYNNNNRTG 3 cut(s) 152, 957, 963
SalI GTCGAC 2 cut(s) 139, 223
SapI GCTCTTC 1 cut(s) 320
SatI GCNGC 2 cut(s) 6, 422
Sau3AI GATC 3 cut(s) 496, 871, 949
ScaI AGTACT 1 cut(s) 646
SchI GAGTC 1 cut(s) 350
SduI GDGCHC 3 cut(s) 332, 431, 973
SfuI TTCGAA 1 cut(s) 447
SmiMI CAYNNNNRTG 3 cut(s) 152, 957, 963
SpeI ACTAGT 1 cut(s) 647
SphI GCATGC 1 cut(s) 785
Sse9I AATT 8 cut(s) 291, 355, 406, 582, 604, 620, 759, 837
SsiI CCGC 1 cut(s) 668
SspI AATATT 3 cut(s) 204, 526, 566
SspMI CTAG 3 cut(s) 492, 648, 842
StyI CCWWGG 1 cut(s) 701
TaiI ACGT 3 cut(s) 251, 261, 888
TaqI TCGA 6 cut(s) 123, 140, 224, 350, 447, 888
TasI AATT 8 cut(s) 291, 355, 406, 582, 604, 620, 759, 837
TatI WGTACW 1 cut(s) 644
TfiI GAWTC 4 cut(s) 71, 444, 660, 977
TscAI CASTG 2 cut(s) 154, 391
TseI GCWGC 2 cut(s) 5, 421
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 2 cut(s) 154, 391
Tth111I GACNNNGTC 1 cut(s) 250
VneI GTGCAC 1 cut(s) 427
XapI RAATTY 3 cut(s) 406, 759, 837
XceI RCATGY 1 cut(s) 785
XmiI GTMKAC 2 cut(s) 140, 224
XspI CTAG 3 cut(s) 492, 648, 842
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.