FvH4_3g25120

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011240
Physical Location & Seq
Reverse (-)
18147289 .. 18148245
957 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25120.t1

Sequence Viewer

Length: 957 bp
ATGGCTGCCTGTGGAAGCCTCCAACACATCTTTGAGACCCCCTTGTCCGCCGAGAGCCCTAGACTGCTTGACCCCCTCTCCTCATGGAACAAACTTCAACCTACCAAACCCATCCACAAGTCTTCCTTCACCGAGATCTTCGGGGAGCTTCATTTCAATGATAATTCTCCAGTGTCATCATCATCAGCTTTACCTGTAGTGCCAAGATCCTTCTCATCATCCTCTTCGTTCGAATTGGGTTCACAACCCAAGATTATTGATGGCAACAAAAATGAAGGGACTGACCATAAGATCAACCCCATGTCAAACGAAGCATCTTTCTCAGGCACAGACAACAAATACAACAGGTCTCACAAAAGTAGTGACAGCTTTTCATCAATGAATTCAGAAAGCTTGCAACTGTGCACAGAGGGGCTTGGTTTTGAGAGCTCAGGCGATGTTGAGGACACGAGGAGCAGCGACGTGAGTGAAGAATGGCAAAATGTTCAAGAGAAGTTTAATTTCACGACAAAGCCATGTTTTATGGCAACATCAGATAGTCATTTTTTTGGACATAGGAAAACAAGGAGTGCTGGTGTAGGAGGATTCCCTCCGCCAATTTCTTGCATAAGCAAGAGTGGGAAGCCTTGGGTTTGCTTCAAGTCTTACAGGCACGATGGCAGGTTTGTCCTCAAAGAAATAAGAATTCCCACCCAGGAGTTCCTTCATGCATACAGAGAAGGTGGTCGGCTCAAGCTGCACTTCATTCACCACGAGGACGAACAGATCCTCAGTGAGGTAGAACGGGAAGATGATGAGGATGATGCTGATAATGACGACGAAGAAAATTGTGAGGATGACGATAACGATATTGATGATCAGGAAGAAGAAAATGGACATGAACATGCAGAAGCTGCATGTGCTGTAATTGAAGGAAATGAGGCAAACACTGGAACCTGCAGTGCAAATGAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

319

Amino Acids

35.35

Weight (kDa)

4.67

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 196 - 248 1.8e-22 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 43
Acc36I ACCTGC 2 cut(s) 651, 944
AciI CCGC 2 cut(s) 48, 593
AclWI GGATC 2 cut(s) 201, 760
AcsI RAATTY 2 cut(s) 382, 684
AfiI CCNNNNNNNGG 1 cut(s) 775
AgsI TTSAA 5 cut(s) 98, 157, 488, 640, 911
AjiI CACGTC 1 cut(s) 463
AjnI CCWGG 1 cut(s) 693
AluBI AGCT 7 cut(s) 148, 188, 369, 393, 429, 736, 893
AluI AGCT 7 cut(s) 148, 188, 369, 393, 429, 736, 893
Alw21I GWGCWC 2 cut(s) 407, 431
Alw26I GTCTC 2 cut(s) 29, 354
Alw44I GTGCAC 1 cut(s) 403
AlwI GGATC 2 cut(s) 201, 760
AlwNI CAGNNNCTG 1 cut(s) 893
ApaLI GTGCAC 1 cut(s) 403
ApeKI GCWGC 4 cut(s) 5, 456, 736, 893
ApoI RAATTY 2 cut(s) 382, 684
AsuHPI GGTGA 2 cut(s) 121, 740
AsuII TTCGAA 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 407
BanII GRGCYC 2 cut(s) 59, 431
BauI CACGAG 2 cut(s) 448, 752
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 407, 431
BbvI GCAGC 3 cut(s) 468, 723, 880
BccI CCATC 3 cut(s) 119, 254, 650
BciT130I CCWGG 1 cut(s) 695
BclI TGATCA 1 cut(s) 856
BcoDI GTCTC 2 cut(s) 29, 354
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 2 cut(s) 195, 937
BfuAI ACCTGC 2 cut(s) 651, 944
BglII AGATCT 1 cut(s) 135
BisI GCNGC 4 cut(s) 6, 457, 737, 894
BlsI GCNGC 4 cut(s) 7, 458, 738, 895
Bme1390I CCNGG 1 cut(s) 695
BmgBI CACGTC 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 934
BmrFI CCNGG 1 cut(s) 695
BmsI GCATC 2 cut(s) 323, 793
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 430
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 716
BsaI GGTCTC 2 cut(s) 29, 354
BsaJI CCNNGG 2 cut(s) 626, 693
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 559, 589
Bsc4I CCNNNNNNNGG 1 cut(s) 775
Bse1I ACTGG 2 cut(s) 170, 934
BseBI CCWGG 1 cut(s) 695
BseDI CCNNGG 2 cut(s) 626, 693
BseGI GGATG 4 cut(s) 111, 218, 805, 841
BseLI CCNNNNNNNGG 1 cut(s) 775
BseMII CTCAG 3 cut(s) 336, 444, 784
BseNI ACTGG 2 cut(s) 170, 934
BseRI GAGGAG 2 cut(s) 70, 466
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 3 cut(s) 468, 723, 880
BsgI GTGCAG 1 cut(s) 722
BsiHKAI GWGCWC 2 cut(s) 407, 431
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 775
BsmAI GTCTC 2 cut(s) 29, 354
BsmFI GGGAC 1 cut(s) 292
Bso31I GGTCTC 2 cut(s) 29, 354
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 59, 407, 431
Bsp143I GATC 5 cut(s) 135, 206, 291, 765, 856
BspACI CCGC 2 cut(s) 48, 593
BspCNI CTCAG 3 cut(s) 335, 443, 783
BspLI GGNNCC 1 cut(s) 934
BspMAI CTGCAG 1 cut(s) 941
BspMI ACCTGC 2 cut(s) 651, 944
BspPI GGATC 2 cut(s) 201, 760
BspT104I TTCGAA 1 cut(s) 231
BspTNI GGTCTC 2 cut(s) 29, 354
BsrI ACTGG 2 cut(s) 170, 934
BssECI CCNNGG 2 cut(s) 626, 693
BssMI GATC 5 cut(s) 135, 206, 291, 765, 856
BssSI CACGAG 2 cut(s) 448, 752
BssT1I CCWWGG 1 cut(s) 626
Bst2BI CACGAG 2 cut(s) 448, 752
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 229
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 3 cut(s) 322, 430, 770
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 4 cut(s) 111, 218, 805, 841
BstKTI GATC 5 cut(s) 138, 209, 294, 768, 859
BstMAI GTCTC 2 cut(s) 29, 354
BstMBI GATC 5 cut(s) 135, 206, 291, 765, 856
BstMWI GCNNNNNNNGC 3 cut(s) 736, 893, 899
BstNI CCWGG 1 cut(s) 695
BstNSI RCATGY 2 cut(s) 887, 900
BstSCI CCNGG 1 cut(s) 693
BstSFI CTRYAG 2 cut(s) 195, 937
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 3 cut(s) 468, 723, 880
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 3 cut(s) 135, 206, 765
BstYI RGATCY 3 cut(s) 135, 206, 765
BtgZI GCGATG 1 cut(s) 450
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 4 cut(s) 111, 218, 805, 841
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 4 cut(s) 177, 778, 927, 946
BveI ACCTGC 2 cut(s) 651, 944
Cac8I GCNNGC 1 cut(s) 395
CaiI CAGNNNCTG 1 cut(s) 893
CviAII CATG 7 cut(s) 84, 301, 516, 707, 878, 884, 897
DdeI CTNAG 3 cut(s) 322, 430, 770
DpnI GATC 5 cut(s) 137, 208, 293, 767, 858
DpnII GATC 5 cut(s) 135, 206, 291, 765, 856
DrdI GACNNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
EciI GGCGGA 2 cut(s) 37, 582
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 626
Eco24I GRGCYC 2 cut(s) 59, 431
Eco31I GGTCTC 2 cut(s) 29, 354
Eco53kI GAGCTC 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoRI GAATTC 2 cut(s) 382, 684
EcoRII CCWGG 1 cut(s) 693
EcoT14I CCWWGG 1 cut(s) 626
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 2 cut(s) 59, 431
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 7 cut(s) 87, 304, 519, 710, 881, 887, 900
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 725, 757
FaqI GGGAC 1 cut(s) 292
FatI CATG 7 cut(s) 83, 300, 515, 706, 877, 883, 896
FbaI TGATCA 1 cut(s) 856
Fnu4HI GCNGC 4 cut(s) 6, 457, 737, 894
FokI GGATG 4 cut(s) 98, 205, 812, 848
FriOI GRGCYC 2 cut(s) 59, 431
Fsp4HI GCNGC 4 cut(s) 6, 457, 737, 894
FspBI CTAG 1 cut(s) 60
GluI GCNGC 4 cut(s) 6, 457, 737, 894
GsuI CTGGAG 1 cut(s) 153
Hin1II CATG 7 cut(s) 87, 304, 519, 710, 881, 887, 900
HindIII AAGCTT 1 cut(s) 391
HinfI GANTC 1 cut(s) 585
HphI GGTGA 2 cut(s) 121, 740
Hpy166II GTNNAC 2 cut(s) 242, 405
Hpy188I TCNGA 2 cut(s) 388, 535
Hpy188III TCNNGA 3 cut(s) 488, 505, 860
Hpy8I GTNNAC 2 cut(s) 242, 405
Hpy99I CGWCG 2 cut(s) 464, 821
HpyAV CCTTC 6 cut(s) 136, 220, 269, 713, 713, 905
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 9 cut(s) 397, 405, 606, 710, 739, 887, 896, 939, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 736, 893, 899
HpyF3I CTNAG 3 cut(s) 322, 430, 770
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 7 cut(s) 87, 304, 519, 710, 881, 887, 900
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 5 cut(s) 135, 206, 291, 765, 856
LmnI GCTCC 2 cut(s) 145, 453
Lsp1109I GCAGC 3 cut(s) 468, 723, 880
LweI GCATC 2 cut(s) 323, 793
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 362
MalI GATC 5 cut(s) 137, 208, 293, 767, 858
MboI GATC 5 cut(s) 135, 206, 291, 765, 856
MboII GAAGA 8 cut(s) 114, 130, 216, 482, 800, 833, 875, 878
MflI RGATCY 3 cut(s) 135, 206, 765
MhlI GDGCHC 3 cut(s) 59, 407, 431
MluCI AATT 8 cut(s) 163, 233, 382, 499, 597, 684, 826, 906
MmeI TCCRAC 1 cut(s) 46
Mph1103I ATGCAT 1 cut(s) 712
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 2 cut(s) 156, 882
MspR9I CCNGG 1 cut(s) 695
MvaI CCWGG 1 cut(s) 695
MwoI GCNNNNNNNGC 3 cut(s) 736, 893, 899
NdeII GATC 5 cut(s) 135, 206, 291, 765, 856
NlaIII CATG 7 cut(s) 87, 304, 519, 710, 881, 887, 900
NlaIV GGNNCC 1 cut(s) 934
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 2 cut(s) 887, 900
NspV TTCGAA 1 cut(s) 231
PfeI GAWTC 1 cut(s) 585
PkrI GCNGC 4 cut(s) 7, 458, 738, 895
Psp124BI GAGCTC 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 693
PspGI CCWGG 1 cut(s) 693
PspN4I GGNNCC 1 cut(s) 934
PstI CTGCAG 1 cut(s) 941
PstNI CAGNNNCTG 1 cut(s) 893
PsuI RGATCY 3 cut(s) 135, 206, 765
RseI CAYNNNNRTG 2 cut(s) 156, 882
SacI GAGCTC 1 cut(s) 431
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 4 cut(s) 6, 457, 737, 894
Sau3AI GATC 5 cut(s) 135, 206, 291, 765, 856
ScrFI CCNGG 1 cut(s) 695
SduI GDGCHC 3 cut(s) 59, 407, 431
SfaNI GCATC 2 cut(s) 323, 793
SfcI CTRYAG 2 cut(s) 195, 937
SfuI TTCGAA 1 cut(s) 231
SmiMI CAYNNNNRTG 2 cut(s) 156, 882
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
Sse9I AATT 8 cut(s) 163, 233, 382, 499, 597, 684, 826, 906
SsiI CCGC 2 cut(s) 48, 593
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 693
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 1 cut(s) 465
TaqI TCGA 1 cut(s) 231
TasI AATT 8 cut(s) 163, 233, 382, 499, 597, 684, 826, 906
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 4 cut(s) 177, 778, 934, 946
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 4 cut(s) 5, 456, 736, 893
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 7 cut(s) 140, 288, 363, 395, 695, 733, 894
TspRI CASTG 4 cut(s) 177, 778, 934, 946
VneI GTGCAC 1 cut(s) 403
XagI CCTNNNNNAGG 1 cut(s) 773
XapI RAATTY 2 cut(s) 382, 684
XceI RCATGY 2 cut(s) 887, 900
XspI CTAG 1 cut(s) 60
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.