pycom03g10180

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0011240
Physical Location & Seq
Reverse (-)
9240772 .. 9241797
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g10180.1

Sequence Viewer

Length: 1026 bp
ATGGCTGCCTGTGGAAGCCTCCAACACATCTTTGAAACCCCATTACCCGATACCCCGACAACACTTCTTGAATCCTTCTCCTCCTCATGGAACCAAATCCAGCCGCTCAAATCATCCAACATCGACAATAATCCATCGTCGACCCTCACTGAGATGTTTGGGGAGCTTCATTTCAAAGAGAATAACAATGTTAGTTCTCCAATATTTTCATCACCTTCCATGTCGTCCTCCTCATCGTCCTCATTGACGTTGTCCAATGTAGGATTTGACCCCGAAACCAAGATTGAGAAAATTGAGGAGAAGATGAAGAAGAATAACGGCCAGAAGAGCCCCTCAAAAGAGTCCTTTTCGAGCAATTACAATATATCTCAGTCTCACAAAAGCAGTGATAGCTTTTCATCAATGAATTCGGAGAGCTTGCAGCTGTGCACGGAGGGACTTGGATTCGAAAGCTCGGACGAAGTTGAGGAGTTTTTCAAGGAAAGTCCTCCTAGTGATCATGGATATCGTGAGGATGAAGAAAATATTATTGTCCAAGAGGAGAAGATTAGTTTTACAAAACAATATTTTCCAATATCAGAAATTAGTTATCATACAAATAATAATTGTTCTGGTGGTAAATTAGGGTTTAGGAGGTCAAGGAGTACTAGTGTTGGGGGATTCCCTCCGCCGATATCTTGCATAAGCAAGAATGGGAAGCCTTGGGTTTGTTTCAAGTCTTACAGGCATGATGGCAGATTTGTCCTCAAAGAAATCAGAATTCCCACACAAGAGTTCTTGCATGCTTACAGGGAAGATGGACGCCTCAAACTGCACTTCGTCATGTCCGACGATGAAATTCTAGGTGAGGAAGACGATGATGTTGATGATGATCTATCATACAGCGTCGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGATCATCTAGATGAAGATGCTGCTCATGATTCAATAAATAATGAAGGAAATGATGAGGCAAAGACAAATAACTATGAGGTACAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

342

Amino Acids

38.55

Weight (kDa)

4.45

Isoelectric Point (pI)

75.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 221 - 273 5.8e-23 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 140
AciI CCGC 2 cut(s) 104, 668
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 3 cut(s) 406, 759, 837
AcyI GRCGYC 1 cut(s) 802
AfaI GTAC 2 cut(s) 646, 1017
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 6 cut(s) 35, 71, 175, 478, 715, 969
AhlI ACTAGT 1 cut(s) 647
AluBI AGCT 5 cut(s) 166, 393, 417, 424, 453
AluI AGCT 5 cut(s) 166, 393, 417, 424, 453
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 1 cut(s) 378
Alw44I GTGCAC 1 cut(s) 427
AoxI GGCC 1 cut(s) 319
ApaLI GTGCAC 1 cut(s) 427
ApeKI GCWGC 3 cut(s) 5, 421, 956
ApoI RAATTY 3 cut(s) 406, 759, 837
AsuHPI GGTGA 2 cut(s) 204, 857
AsuII TTCGAA 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 2 cut(s) 433, 943
BccI CCATC 3 cut(s) 142, 725, 791
BceAI ACGGC 1 cut(s) 334
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 378
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 4 cut(s) 492, 648, 842, 944
BisI GCNGC 4 cut(s) 6, 104, 422, 957
BlsI GCNGC 4 cut(s) 7, 105, 423, 958
BmcAI AGTACT 1 cut(s) 646
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 1 cut(s) 943
BpiI GAAGAC 1 cut(s) 858
Bpu14I TTCGAA 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 870
BsaHI GRCGYC 1 cut(s) 802
BsaJI CCNNGG 1 cut(s) 701
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 870
BseDI CCNNGG 1 cut(s) 701
BseGI GGATG 2 cut(s) 113, 520
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 2 cut(s) 141, 383
BseRI GAGGAG 6 cut(s) 70, 73, 220, 311, 482, 554
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 2 cut(s) 433, 943
BsgI GTGCAG 1 cut(s) 797
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 431
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 450
BsnI GGCC 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 2 cut(s) 332, 431
Bsp143I GATC 3 cut(s) 496, 871, 937
BspACI CCGC 2 cut(s) 104, 668
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 142, 382
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 320
BspT104I TTCGAA 1 cut(s) 447
BsrBI CCGCTC 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 701
BssMI GATC 3 cut(s) 496, 871, 937
BssNI GRCGYC 1 cut(s) 802
BssT1I CCWWGG 1 cut(s) 701
Bst6I CTCTTC 2 cut(s) 320, 891
BstACI GRCGYC 1 cut(s) 802
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 419, 783
BstDEI CTNAG 2 cut(s) 150, 369
BstF5I GGATG 2 cut(s) 113, 520
BstKTI GATC 3 cut(s) 499, 874, 940
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 3 cut(s) 496, 871, 937
BstMWI GCNNNNNNNGC 2 cut(s) 327, 390
BstNSI RCATGY 1 cut(s) 785
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 433, 943
BstV2I GAAGAC 1 cut(s) 858
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 2 cut(s) 113, 520
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 2 cut(s) 147, 391
Cac8I GCNNGC 2 cut(s) 419, 783
CciI TCATGA 1 cut(s) 961
CseI GACGC 2 cut(s) 810, 874
Csp6I GTAC 2 cut(s) 645, 1016
CviAII CATG 8 cut(s) 87, 220, 500, 728, 782, 823, 962, 1023
CviQI GTAC 2 cut(s) 645, 1016
DdeI CTNAG 2 cut(s) 150, 369
DpnI GATC 3 cut(s) 498, 873, 939
DpnII GATC 3 cut(s) 496, 871, 937
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 320, 891
EarI CTCTTC 2 cut(s) 320, 891
EciI GGCGGA 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 701
Eco24I GRGCYC 1 cut(s) 332
Eco32I GATATC 2 cut(s) 506, 675
EcoRI GAATTC 2 cut(s) 406, 759
EcoRV GATATC 2 cut(s) 506, 675
EcoT14I CCWWGG 1 cut(s) 701
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 8 cut(s) 90, 223, 503, 731, 785, 826, 965, 1026
FaqI GGGAC 1 cut(s) 450
FatI CATG 8 cut(s) 86, 219, 499, 727, 781, 822, 961, 1022
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 4 cut(s) 6, 104, 422, 957
FokI GGATG 2 cut(s) 100, 527
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 4 cut(s) 6, 104, 422, 957
FspBI CTAG 4 cut(s) 492, 648, 842, 944
GluI GCNGC 4 cut(s) 6, 104, 422, 957
HaeIII GGCC 1 cut(s) 321
HgaI GACGC 2 cut(s) 810, 874
Hin1I GRCGYC 1 cut(s) 802
Hin1II CATG 8 cut(s) 90, 223, 503, 731, 785, 826, 965, 1026
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 5 cut(s) 71, 341, 444, 660, 965
HphI GGTGA 2 cut(s) 204, 857
Hpy166II GTNNAC 2 cut(s) 141, 429
Hpy188I TCNGA 5 cut(s) 412, 457, 580, 758, 829
Hpy188III TCNNGA 4 cut(s) 68, 509, 944, 962
Hpy8I GTNNAC 2 cut(s) 141, 429
Hpy99I CGWCG 3 cut(s) 142, 833, 890
HpyAV CCTTC 3 cut(s) 85, 225, 974
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 5 cut(s) 421, 429, 681, 781, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 390
HpyF3I CTNAG 2 cut(s) 150, 369
HpySE526I ACGT 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 802
Hsp92II CATG 8 cut(s) 90, 223, 503, 731, 785, 826, 965, 1026
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 3 cut(s) 496, 871, 937
LguI GCTCTTC 1 cut(s) 320
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 22, 113, 335, 597, 709, 775
Lsp1109I GCAGC 2 cut(s) 433, 943
LweI GCATC 1 cut(s) 943
MaeI CTAG 4 cut(s) 492, 648, 842, 944
MaeII ACGT 1 cut(s) 248
MalI GATC 3 cut(s) 498, 873, 939
MbiI CCGCTC 1 cut(s) 106
MboI GATC 3 cut(s) 496, 871, 937
MhlI GDGCHC 2 cut(s) 332, 431
MluCI AATT 8 cut(s) 291, 355, 406, 582, 604, 620, 759, 837
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 3 cut(s) 46, 141, 852
MslI CAYNNNNRTG 2 cut(s) 152, 945
MspA1I CMGCKG 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 327, 390
NdeII GATC 3 cut(s) 496, 871, 937
NlaIII CATG 8 cut(s) 90, 223, 503, 731, 785, 826, 965, 1026
NlaIV GGNNCC 1 cut(s) 92
NspI RCATGY 1 cut(s) 785
NspV TTCGAA 1 cut(s) 447
PaeI GCATGC 1 cut(s) 785
PagI TCATGA 1 cut(s) 961
PciSI GCTCTTC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 825
PfeI GAWTC 4 cut(s) 71, 444, 660, 965
PflFI GACNNNGTC 1 cut(s) 250
PkrI GCNGC 4 cut(s) 7, 105, 423, 958
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 92
PsyI GACNNNGTC 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 2 cut(s) 646, 1017
RsaNI GTAC 2 cut(s) 645, 1016
RseI CAYNNNNRTG 2 cut(s) 152, 945
SalI GTCGAC 1 cut(s) 139
SapI GCTCTTC 1 cut(s) 320
SatI GCNGC 4 cut(s) 6, 104, 422, 957
Sau3AI GATC 3 cut(s) 496, 871, 937
ScaI AGTACT 1 cut(s) 646
SchI GAGTC 1 cut(s) 350
SduI GDGCHC 2 cut(s) 332, 431
SfaNI GCATC 1 cut(s) 943
SfuI TTCGAA 1 cut(s) 447
SmiMI CAYNNNNRTG 2 cut(s) 152, 945
SpeI ACTAGT 1 cut(s) 647
SphI GCATGC 1 cut(s) 785
Sse9I AATT 8 cut(s) 291, 355, 406, 582, 604, 620, 759, 837
SsiI CCGC 2 cut(s) 104, 668
SspI AATATT 3 cut(s) 204, 526, 566
SspMI CTAG 4 cut(s) 492, 648, 842, 944
StyI CCWWGG 1 cut(s) 701
TaiI ACGT 1 cut(s) 251
TaqI TCGA 5 cut(s) 123, 140, 350, 447, 888
TasI AATT 8 cut(s) 291, 355, 406, 582, 604, 620, 759, 837
TatI WGTACW 1 cut(s) 644
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 4 cut(s) 71, 444, 660, 965
TscAI CASTG 2 cut(s) 154, 391
TseI GCWGC 3 cut(s) 5, 421, 956
TspDTI ATGAA 9 cut(s) 158, 198, 320, 387, 419, 531, 849, 963, 993
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 2 cut(s) 154, 391
Tth111I GACNNNGTC 1 cut(s) 250
VneI GTGCAC 1 cut(s) 427
XapI RAATTY 3 cut(s) 406, 759, 837
XbaI TCTAGA 1 cut(s) 943
XceI RCATGY 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 140
XspI CTAG 4 cut(s) 492, 648, 842, 944
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.