AT5G22410

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015196
Physical Location & Seq
Forward (+)
7426310 .. 7427964
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22410.1

Sequence Viewer

Length: 996 bp
ATGGCCGTGAAGATCTCGACCATTGAAGTATTGATCCTCTCCCTTGCTCTACTTAGCTTCGGCCATGGTTGTTATGGCCAGCTTCGACTCGGATTCTACAGTCAAAATTGCCAAAACGTCGAAAACATCGTATCTAAAGTTGTTGGAGAGGCATTCATCAAGGATTCATCGATTGCACCCGCAATGATCCGCCTTTATTTTCACGATTGTTTTAGCAACGGGTGTGATGCATCGCTTCTTCTAGATGGTTCGAACAGTGAGAAAAAGGCGTCACCAAATCTAAGTGTACGCGGATACGAAGTGATAGATGACATTAAGTCTGCGGTCGAAAAAGAATGTGACAGGGTCGTTTCTTGTGCTGATATCATAGCTCTCGCGACTAGAGATCTTGTTACTCTTGCAAGCGGAGGGAAAACACGATATGAGATACCAACAGGACGATTGGACGGTAAAATCTCTTCGGCTTTGCTTGTCGATTTGCCGTCTCCAAAGATGACCGTCGCGGAAACTGCTGCTAAATTTGATCAGAGGAAACTTAGCCTTAACGATATGGTTCTACTTCTTGGTGGACATACGATTGGAGTGACACATTGTTCCTTCATTATGGACAGATTATATAACTTTCAAAACACGCAAAAGCCTGATCCATCTATGGATCCTAAATTGGTCGAAGAACTAAGCGCCAAATGCCCTAAGAGTTCATCAACCGATGGCATCATTAGTCTGGATCAAAATGCTACTAGCTCGAATACTATGGATGTATCTTTCTACAAAGAGATAAAAGTTAGCCGTGGAGTCCTTCATATCGATCAAAAACTTGCCATCGACGATTTGACAAGTAAGATGGTGACGGATATAGCCAACGGTAACGATTTCTTGGTTAGGTTTGGTCAGGCAATGGTGAATTTGGGATCGGTGAGAGTTATTAGTAAGCCCAAAGACGGGGAGATAAGAAGATCATGTCGTTCTACTTGCAACAATCCATTATGCGTATAA

Protein Analysis

331

Amino Acids

36.02

Weight (kDa)

6.53

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 288 2e-76 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22410
fragaria_vesca FvH4_3g25270
malus_domestica MD03G1147900.v1.1
prunus_persica Prupe.6G132800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046861
rosa_laevigata RLG00000034451
rosa_multiflora Rmu_sc0002264.1_g000029
rosa_roxburghii Rroxscaffold_1G00034520
rosa_rugosa Rorug05G0232300
rosa_samantha Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana Rw5G029120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 291, 377, 503
AciI CCGC 6 cut(s) 180, 190, 291, 323, 405, 503
AclWI GGATC 7 cut(s) 28, 181, 638, 650, 663, 735, 919
AcoI YGGCCR 3 cut(s) 3, 61, 76
AcsI RAATTY 2 cut(s) 518, 904
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 941, 942
AgsI TTSAA 2 cut(s) 26, 626
AhdI GACNNNNNGTC 1 cut(s) 316
AluBI AGCT 4 cut(s) 57, 82, 371, 744
AluI AGCT 4 cut(s) 57, 82, 371, 744
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 7 cut(s) 28, 181, 638, 650, 663, 735, 919
AoxI GGCC 3 cut(s) 3, 61, 76
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 2 cut(s) 518, 904
AspLEI GCGC 1 cut(s) 683
AsuHPI GGTGA 4 cut(s) 264, 859, 913, 928
AsuII TTCGAA 1 cut(s) 251
BalI TGGCCA 1 cut(s) 78
BamHI GGATCC 1 cut(s) 655
BarI GAAGNNNNNNTAC 2 cut(s) 442, 474
BbvI GCAGC 1 cut(s) 499
BccI CCATC 5 cut(s) 239, 655, 704, 830, 838
BceAI ACGGC 2 cut(s) 466, 774
BciVI GTATCC 1 cut(s) 287
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 3 cut(s) 242, 381, 741
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 684
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 2 cut(s) 12, 385
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
BmeRI GACNNNNNGTC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 657
BmsI GCATC 3 cut(s) 217, 239, 723
Bpu14I TTCGAA 1 cut(s) 251
Bsa29I ATCGAT 2 cut(s) 170, 807
BsaHI GRCGYC 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 64, 790
Bsc4I CCNNNNNNNGG 2 cut(s) 941, 942
Bse3DI GCAATG 2 cut(s) 189, 903
BseCI ATCGAT 2 cut(s) 170, 807
BseDI CCNNGG 2 cut(s) 64, 790
BseGI GGATG 1 cut(s) 763
BseLI CCNNNNNNNGG 2 cut(s) 941, 942
BseMI GCAATG 2 cut(s) 189, 903
BseXI GCAGC 1 cut(s) 499
Bsh1236I CGCG 3 cut(s) 291, 377, 503
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 3 cut(s) 5, 63, 78
BshVI ATCGAT 2 cut(s) 170, 807
BsiEI CGRYCG 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 941, 942
BsmAI GTCTC 1 cut(s) 489
BsmBI CGTCTC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 3 cut(s) 5, 63, 78
Bsp119I TTCGAA 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 64
Bsp68I TCGCGA 1 cut(s) 377
BspACI CCGC 6 cut(s) 180, 190, 291, 323, 405, 503
BspANI GGCC 3 cut(s) 5, 63, 78
BspDI ATCGAT 2 cut(s) 170, 807
BspFNI CGCG 3 cut(s) 291, 377, 503
BspLI GGNNCC 1 cut(s) 657
BspPI GGATC 7 cut(s) 28, 181, 638, 650, 663, 735, 919
BspT104I TTCGAA 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 189, 903
BssECI CCNNGG 2 cut(s) 64, 790
BssNI GRCGYC 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 5 cut(s) 101, 257, 449, 499, 866
Bst6I CTCTTC 1 cut(s) 463
BstACI GRCGYC 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 80, 403
BstDEI CTNAG 5 cut(s) 53, 281, 536, 677, 693
BstDSI CCRYGG 2 cut(s) 64, 790
BstF5I GGATG 1 cut(s) 763
BstFNI CGCG 3 cut(s) 291, 377, 503
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstMAI GTCTC 1 cut(s) 489
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 2 cut(s) 509, 687
BstSFI CTRYAG 1 cut(s) 97
BstUI CGCG 3 cut(s) 291, 377, 503
BstV1I GCAGC 1 cut(s) 499
BstX2I RGATCY 3 cut(s) 12, 385, 655
BstYI RGATCY 3 cut(s) 12, 385, 655
Bsu15I ATCGAT 2 cut(s) 170, 807
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 3 cut(s) 5, 63, 78
BsuTUI ATCGAT 2 cut(s) 170, 807
BtgI CCRYGG 2 cut(s) 64, 790
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 763
BtsIMutI CAGTG 1 cut(s) 262
BtuMI TCGCGA 1 cut(s) 377
Cac8I GCNNGC 2 cut(s) 80, 403
CfoI GCGC 1 cut(s) 683
ClaI ATCGAT 2 cut(s) 170, 807
CseI GACGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 287
CviAII CATG 2 cut(s) 65, 960
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 5 cut(s) 53, 281, 536, 677, 693
DriI GACNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 3 cut(s) 3, 61, 76
Eam1104I CTCTTC 1 cut(s) 463
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 463
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 64
Eco32I GATATC 1 cut(s) 364
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 2 cut(s) 68, 963
FatI CATG 2 cut(s) 64, 959
FauI CCCGC 1 cut(s) 187
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 1 cut(s) 770
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 3 cut(s) 242, 381, 741
GlaI GCGC 1 cut(s) 682
GluI GCNGC 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 3 cut(s) 5, 63, 78
HgaI GACGC 1 cut(s) 258
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 2 cut(s) 68, 963
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HinfI GANTC 4 cut(s) 87, 93, 164, 795
HphI GGTGA 4 cut(s) 264, 859, 913, 928
Hpy166II GTNNAC 2 cut(s) 287, 569
Hpy188I TCNGA 2 cut(s) 92, 528
Hpy188III TCNNGA 5 cut(s) 16, 203, 242, 376, 725
Hpy8I GTNNAC 2 cut(s) 287, 569
Hpy99I CGWCG 3 cut(s) 122, 503, 830
HpyAV CCTTC 2 cut(s) 607, 809
HpyCH4III ACNGT 5 cut(s) 101, 257, 449, 499, 866
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 176, 230, 401, 975
HpyF10VI GCNNNNNNNGC 2 cut(s) 509, 687
HpyF3I CTNAG 5 cut(s) 53, 281, 536, 677, 693
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 2 cut(s) 68, 963
HspAI GCGC 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 523
LpnPI CCDG 6 cut(s) 92, 328, 420, 654, 710, 878
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 3 cut(s) 217, 239, 723
MaeI CTAG 3 cut(s) 242, 381, 741
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 6 cut(s) 270, 338, 391, 583, 847, 866
MboII GAAGA 5 cut(s) 22, 230, 450, 683, 966
MflI RGATCY 3 cut(s) 12, 385, 655
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 4 cut(s) 106, 518, 662, 904
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 2 cut(s) 81, 804
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 4 cut(s) 47, 142, 401, 522
Mox20I TGGCCA 1 cut(s) 78
Mph1103I ATGCAT 1 cut(s) 232
MscI TGGCCA 1 cut(s) 78
MseI TTAA 2 cut(s) 315, 543
Msp20I TGGCCA 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 152
MvnI CGCG 3 cut(s) 291, 377, 503
MwoI GCNNNNNNNGC 2 cut(s) 509, 687
NcoI CCATGG 1 cut(s) 64
NlaIII CATG 2 cut(s) 68, 963
NlaIV GGNNCC 1 cut(s) 657
NmuCI GTSAC 4 cut(s) 270, 338, 583, 847
NruI TCGCGA 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 232
NspV TTCGAA 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 152
PfeI GAWTC 2 cut(s) 93, 164
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 1 cut(s) 514
PleI GAGTC 2 cut(s) 81, 803
PpsI GAGTC 2 cut(s) 81, 803
PspN4I GGNNCC 1 cut(s) 657
PsuI RGATCY 3 cut(s) 12, 385, 655
PsyI GACNNNGTC 1 cut(s) 344
RruI TCGCGA 1 cut(s) 377
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 315, 543
SatI GCNGC 1 cut(s) 513
SchI GAGTC 2 cut(s) 81, 804
SetI ASST 6 cut(s) 59, 84, 120, 373, 746, 887
SfaNI GCATC 3 cut(s) 217, 239, 723
SfcI CTRYAG 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 251
Sse9I AATT 4 cut(s) 106, 518, 662, 904
SsiI CCGC 6 cut(s) 180, 190, 291, 323, 405, 503
SspMI CTAG 3 cut(s) 242, 381, 741
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 5 cut(s) 101, 257, 449, 499, 866
TaiI ACGT 1 cut(s) 120
TasI AATT 4 cut(s) 106, 518, 662, 904
TfiI GAWTC 2 cut(s) 93, 164
Tru1I TTAA 2 cut(s) 315, 543
Tru9I TTAA 2 cut(s) 315, 543
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 4 cut(s) 270, 338, 583, 847
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 4 cut(s) 270, 338, 583, 847
TspDTI ATGAA 5 cut(s) 145, 156, 589, 690, 791
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 1 cut(s) 262
Tth111I GACNNNGTC 1 cut(s) 344
XapI RAATTY 2 cut(s) 518, 904
XbaI TCTAGA 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XspI CTAG 3 cut(s) 242, 381, 741
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.