FvH4_3g25270

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015196
Physical Location & Seq
Forward (+)
18248401 .. 18250404
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25270.t1

Sequence Viewer

Length: 981 bp
ATGAAAATGACTAGCAGAGCTCTAGTGGCAGTAGGGATCTTTGGACTCATATTTGTGAGCCTCACGGGGCAGTCCTATGGGGCACTGGAGGTAGGGTTCTACAAGAGAAAATGCTTTGTTGATGTTGAAAGAGTAGTAGCTGCTGTAGTCAGGGAAAAGTTCTTCAGGGACCCGACAATTGTTGCTGCCCTCGTTCGCATGCAGTTCCACGATTGCTTTGTGAATGGATGTGATGCATCCATTCTACTAGATGGAATCTCTAGTGAGAAAACAGCTGGTCCAAATCTCAGTGTTCGGGGTTATGACGTTATAGATGCTGTAAAAACTGCTGTCGAATTTGTATGCCGAGGAAAGGTCTCCTGTGCTGATATCATTGTAATGGCTACCAGAGAAGCTGTATATCTGAGTGGAGGAGGGCGATACGATGTTCAAACTGGGAGAAGAGATGGCAATGTATCTCTTGCAACAAATGTTCGTCTCCCATCTCCATCAATTTCAGTAAATCAATCTGTTGAAGCATTCAAGAGTAAAAACCTCGATGTCACTGACATGGTTTATCTTCTCGGCGGTCACACAATTGGGGTGGCACATTGTTCTCTCTTCCAAGACCGTCTTTACAATTTCCAAAGCACCGGCAGACCTGACCCGAGCATGGATTCATCGTTGCTGCAAAAGCTGAGATCTATCTGCCCTCAAAATTCAGAGAGCAGTAGAACTGCTAATCTTGACCAGAACGTAACAAGTGCATTCACTGTTGACAACTCATTCTACAAGCAAATACTAGCCGGGAAAGGAGTTCTTCAGATCGACCAAGAGCTAGCTTTCGACCCCAAAACTAAGCCCGCAGTGACAACAATCGCCAGTAGTTCGAGCTTCTCCGAGAAATTTGGTCAGGCCATGGTTAAGTTGGGAGCAGTTGGAGTACTTACAGGCACGGAAGGGGAGATCAGGCAATCATGCAGAGCAGTTAACACTCGTTGA

Protein Analysis

327

Amino Acids

35.26

Weight (kDa)

8.73

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 288 3.6e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22410
fragaria_vesca FvH4_3g25270
malus_domestica MD03G1147900.v1.1
prunus_persica Prupe.6G132800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046861
rosa_laevigata RLG00000034451
rosa_multiflora Rmu_sc0002264.1_g000029
rosa_roxburghii Rroxscaffold_1G00034520
rosa_rugosa Rorug05G0232300
rosa_samantha Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana Rw5G029120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 567, 843
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 3 cut(s) 335, 697, 884
AcuI CTGAAG 2 cut(s) 148, 785
AfaI GTAC 1 cut(s) 924
AfiI CCNNNNNNNGG 2 cut(s) 352, 652
AgsI TTSAA 4 cut(s) 128, 431, 515, 523
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 8 cut(s) 20, 140, 275, 395, 676, 817, 821, 873
AluI AGCT 8 cut(s) 20, 140, 275, 395, 676, 817, 821, 873
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 2 cut(s) 361, 482
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 646
AoxI GGCC 1 cut(s) 894
ApeKI GCWGC 3 cut(s) 140, 185, 667
ApoI RAATTY 3 cut(s) 335, 697, 884
AspS9I GGNCC 2 cut(s) 169, 278
AsuC2I CCSGG 1 cut(s) 787
AsuNHI GCTAGC 1 cut(s) 817
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 2 cut(s) 169, 278
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 127, 172, 654
BccI CCATC 4 cut(s) 245, 440, 490, 496
BcnI CCSGG 1 cut(s) 787
BcoDI GTCTC 2 cut(s) 361, 482
BfaI CTAG 6 cut(s) 12, 23, 248, 261, 782, 818
BfmI CTRYAG 1 cut(s) 144
BglII AGATCT 1 cut(s) 680
BisI GCNGC 3 cut(s) 141, 186, 668
BlsI GCNGC 3 cut(s) 142, 187, 669
BmcAI AGTACT 1 cut(s) 924
Bme1390I CCNGG 1 cut(s) 787
Bme18I GGWCC 2 cut(s) 169, 278
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 169, 278
BmiI GGNNCC 2 cut(s) 170, 171
BmrFI CCNGG 1 cut(s) 787
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 3 cut(s) 223, 245, 304
BmtI GCTAGC 1 cut(s) 821
BmuI ACTGGG 1 cut(s) 444
BpmI CTGGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 787
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 346, 897
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 652
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 3 cut(s) 90, 439, 861
Bse3DI GCAATG 1 cut(s) 457
BseDI CCNNGG 2 cut(s) 346, 897
BseGI GGATG 2 cut(s) 233, 236
BseLI CCNNNNNNNGG 2 cut(s) 352, 652
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 3 cut(s) 301, 395, 668
BseNI ACTGG 3 cut(s) 90, 439, 861
BseRI GAGGAG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 3 cut(s) 127, 172, 654
BshFI GGCC 1 cut(s) 896
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 2 cut(s) 633, 786
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 352, 652
BsmAI GTCTC 2 cut(s) 361, 482
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 2 cut(s) 518, 746
BsnI GGCC 1 cut(s) 896
Bso31I GGTCTC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 646
Bsp1286I GDGCHC 2 cut(s) 22, 85
Bsp143I GATC 4 cut(s) 36, 680, 804, 945
Bsp19I CCATGG 1 cut(s) 897
BspACI CCGC 2 cut(s) 567, 843
BspANI GGCC 1 cut(s) 896
BspCNI CTCAG 3 cut(s) 300, 396, 669
BspLI GGNNCC 2 cut(s) 170, 171
BspOI GCTAGC 1 cut(s) 821
BspPI GGATC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 3 cut(s) 90, 439, 861
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 2 cut(s) 346, 897
BssMI GATC 4 cut(s) 36, 680, 804, 945
BssT1I CCWWGG 1 cut(s) 897
Bst4CI ACNGT 2 cut(s) 611, 754
Bst6I CTCTTC 2 cut(s) 436, 605
BstC8I GCNNGC 3 cut(s) 200, 819, 843
BstDEI CTNAG 4 cut(s) 287, 404, 677, 837
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 2 cut(s) 233, 236
BstKTI GATC 4 cut(s) 39, 683, 807, 948
BstMAI GTCTC 2 cut(s) 361, 482
BstMBI GATC 4 cut(s) 36, 680, 804, 945
BstMWI GCNNNNNNNGC 2 cut(s) 26, 673
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 785
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 3 cut(s) 127, 172, 654
BstX2I RGATCY 2 cut(s) 36, 680
BstYI RGATCY 2 cut(s) 36, 680
BsuRI GGCC 1 cut(s) 896
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 2 cut(s) 233, 236
BtsI GCAGTG 1 cut(s) 852
BtsIMutI CAGTG 5 cut(s) 83, 295, 543, 750, 852
Cac8I GCNNGC 3 cut(s) 200, 819, 843
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 2 cut(s) 169, 278
Csp6I GTAC 1 cut(s) 923
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviAII CATG 5 cut(s) 199, 550, 652, 898, 957
CviQI GTAC 1 cut(s) 923
DdeI CTNAG 4 cut(s) 287, 404, 677, 837
DpnI GATC 4 cut(s) 38, 682, 806, 947
DpnII GATC 4 cut(s) 36, 680, 804, 945
Eam1104I CTCTTC 2 cut(s) 436, 605
EarI CTCTTC 2 cut(s) 436, 605
Ecl136II GAGCTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 897
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 361
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 169, 278
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 148, 785
Eco88I CYCGRG 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 169
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 897
EcoT22I ATGCAT 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 897
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 5 cut(s) 202, 553, 655, 901, 960
FalI AAGNNNNNCTT 4 cut(s) 597, 629, 783, 815
FaqI GGGAC 1 cut(s) 182
FatI CATG 5 cut(s) 198, 549, 651, 897, 956
FauI CCCGC 1 cut(s) 850
Fnu4HI GCNGC 3 cut(s) 141, 186, 668
FokI GGATG 2 cut(s) 223, 240
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 141, 186, 668
FspBI CTAG 6 cut(s) 12, 23, 248, 261, 782, 818
GluI GCNGC 3 cut(s) 141, 186, 668
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 896
HapII CCGG 2 cut(s) 633, 786
Hin1II CATG 5 cut(s) 202, 553, 655, 901, 960
HincII GTYRAC 2 cut(s) 757, 970
HindII GTYRAC 2 cut(s) 757, 970
HinfI GANTC 3 cut(s) 45, 255, 656
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 2 cut(s) 633, 786
Hpy166II GTNNAC 2 cut(s) 757, 970
Hpy188I TCNGA 4 cut(s) 405, 703, 804, 880
Hpy188III TCNNGA 2 cut(s) 523, 725
Hpy8I GTNNAC 2 cut(s) 757, 970
HpyAV CCTTC 1 cut(s) 932
HpyCH4III ACNGT 2 cut(s) 611, 754
HpyCH4IV ACGT 2 cut(s) 306, 735
HpyCH4V TGCA 6 cut(s) 202, 236, 464, 670, 746, 960
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 673
HpyF3I CTNAG 4 cut(s) 287, 404, 677, 837
HpySE526I ACGT 2 cut(s) 306, 735
Hsp92II CATG 5 cut(s) 202, 553, 655, 901, 960
KflI GGGWCCC 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 4 cut(s) 36, 680, 804, 945
LmnI GCTCC 1 cut(s) 911
Lsp1109I GCAGC 3 cut(s) 127, 172, 654
LweI GCATC 3 cut(s) 223, 245, 304
MaeI CTAG 6 cut(s) 12, 23, 248, 261, 782, 818
MaeII ACGT 2 cut(s) 306, 735
MaeIII GTNAC 4 cut(s) 541, 569, 736, 847
MalI GATC 4 cut(s) 38, 682, 806, 947
MboI GATC 4 cut(s) 36, 680, 804, 945
MboII GAAGA 5 cut(s) 154, 453, 551, 592, 791
MfeI CAATTG 2 cut(s) 177, 576
MflI RGATCY 2 cut(s) 36, 680
MhlI GDGCHC 2 cut(s) 22, 85
MluCI AATT 7 cut(s) 177, 335, 492, 576, 619, 697, 884
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 898
MnlI CCTC 8 cut(s) 71, 82, 200, 341, 404, 407, 545, 702
Mph1103I ATGCAT 1 cut(s) 238
MseI TTAA 2 cut(s) 903, 969
MslI CAYNNNNRTG 3 cut(s) 53, 377, 548
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 2 cut(s) 633, 786
MspR9I CCNGG 1 cut(s) 787
MunI CAATTG 2 cut(s) 177, 576
Mva1269I GAATGC 2 cut(s) 518, 746
MwoI GCNNNNNNNGC 2 cut(s) 26, 673
NciI CCSGG 1 cut(s) 787
NcoI CCATGG 1 cut(s) 897
NdeII GATC 4 cut(s) 36, 680, 804, 945
NheI GCTAGC 1 cut(s) 817
NlaIII CATG 5 cut(s) 202, 553, 655, 901, 960
NlaIV GGNNCC 2 cut(s) 170, 171
NmeAIII GCCGAG 2 cut(s) 371, 543
NmuCI GTSAC 3 cut(s) 541, 569, 847
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 1 cut(s) 202
PaeI GCATGC 1 cut(s) 202
PctI GAATGC 2 cut(s) 518, 746
PfeI GAWTC 2 cut(s) 255, 656
PkrI GCNGC 3 cut(s) 142, 187, 669
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 170, 171
PspPI GGNCC 2 cut(s) 169, 278
PspPPI RGGWCCY 1 cut(s) 169
PsuI RGATCY 2 cut(s) 36, 680
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 924
RsaNI GTAC 1 cut(s) 923
RseI CAYNNNNRTG 3 cut(s) 53, 377, 548
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 903, 969
SatI GCNGC 3 cut(s) 141, 186, 668
Sau3AI GATC 4 cut(s) 36, 680, 804, 945
Sau96I GGNCC 2 cut(s) 169, 278
ScaI AGTACT 1 cut(s) 924
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 787
SduI GDGCHC 2 cut(s) 22, 85
SfaNI GCATC 3 cut(s) 223, 245, 304
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 2 cut(s) 169, 278
SmiMI CAYNNNNRTG 3 cut(s) 53, 377, 548
SphI GCATGC 1 cut(s) 202
Sse9I AATT 7 cut(s) 177, 335, 492, 576, 619, 697, 884
SsiI CCGC 2 cut(s) 567, 843
SspMI CTAG 6 cut(s) 12, 23, 248, 261, 782, 818
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 785
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 2 cut(s) 611, 754
TaiI ACGT 2 cut(s) 309, 738
TaqI TCGA 5 cut(s) 333, 537, 807, 825, 869
TasI AATT 7 cut(s) 177, 335, 492, 576, 619, 697, 884
TatI WGTACW 1 cut(s) 922
TfiI GAWTC 2 cut(s) 255, 656
Tru1I TTAA 2 cut(s) 903, 969
Tru9I TTAA 2 cut(s) 903, 969
TscAI CASTG 5 cut(s) 90, 295, 550, 757, 852
TseFI GTSAC 3 cut(s) 541, 569, 847
TseI GCWGC 3 cut(s) 140, 185, 667
Tsp45I GTSAC 3 cut(s) 541, 569, 847
TspDTI ATGAA 2 cut(s) 17, 648
TspGWI ACGGA 1 cut(s) 950
TspRI CASTG 5 cut(s) 90, 295, 550, 757, 852
VpaK11BI GGWCC 2 cut(s) 169, 278
XapI RAATTY 3 cut(s) 335, 697, 884
XceI RCATGY 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XspI CTAG 6 cut(s) 12, 23, 248, 261, 782, 818
ZrmI AGTACT 1 cut(s) 924
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.