Rh1BG405200

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015196
Physical Location & Seq
Forward (+)
52777941 .. 52779837
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG405200.1

Sequence Viewer

Length: 549 bp
ATGGACCGAACAATTGCTGCTGCTCTAGTTCGCATGCAGTTCCACGATTGCTTTGTGAATGGATGTGATGCGTCCATTCTACTAGATGGAAGCTCCAGTGAGAAAACAGCTCCTCCAAATCTCAGTGTACGGGGTTATGATGTCATTGATGCTGCAAAAGCTGCAGTCGAAGTTGTATGCCCAGGAAAGGTCTCCTGCTCGGATATCATTGTAATGGCTACCAGAGAAGCTGTATGTCTGAGTGGAGGAGGGCGATACAGTGTTCAAACTGGGAGAAGAGATGGCTTTGTATCTCTTGCATCAAATGTTGATCTCCCAGCTCCATCAATTTCAGTGAATCAATCTGTTGCAGCATTTGCTAGAAAAGGACTCAATGCCATTGACATGGTTTATCTTCTTGGTACTAAACAATACATACTCATCAGCGCCCCTTCTTCTTATTCTTCAAGTTTCAAATCTCAAATTTTCAATATTTTGTTTGCAAATGTTATCTTGTTGGACATATCTGACTGGTTATGTTGTCCAACATCAATTTGGTTACAGATTTAA

Protein Analysis

182

Amino Acids

19.44

Weight (kDa)

5.72

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 135 1.7e-49 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22410
fragaria_vesca FvH4_3g25270
malus_domestica MD03G1147900.v1.1
prunus_persica Prupe.6G132800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046861
rosa_laevigata RLG00000034451
rosa_multiflora Rmu_sc0002264.1_g000029
rosa_roxburghii Rroxscaffold_1G00034520
rosa_rugosa Rorug05G0232300
rosa_samantha Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana Rw5G029120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 462
AfaI GTAC 2 cut(s) 129, 403
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 4 cut(s) 266, 447, 454, 469
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 5 cut(s) 93, 110, 161, 230, 320
AluI AGCT 5 cut(s) 93, 110, 161, 230, 320
Alw26I GTCTC 1 cut(s) 196
ApeKI GCWGC 5 cut(s) 17, 20, 152, 161, 350
ApoI RAATTY 1 cut(s) 462
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 5 cut(s) 4, 7, 139, 148, 362
BccI CCATC 3 cut(s) 80, 275, 331
BciT130I CCWGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 3 cut(s) 26, 83, 360
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 429
BisI GCNGC 5 cut(s) 18, 21, 153, 162, 351
BlsI GCNGC 5 cut(s) 19, 22, 154, 163, 352
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 3 cut(s) 58, 139, 308
BmuI ACTGGG 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 79
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 3 cut(s) 96, 274, 515
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 136, 230
BseNI ACTGG 3 cut(s) 96, 274, 515
BseRI GAGGAG 2 cut(s) 102, 261
BseXI GCAGC 5 cut(s) 4, 7, 139, 148, 362
BseYI CCCAGC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 196
Bso31I GGTCTC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 310
BspCNI CTCAG 2 cut(s) 135, 231
BspMAI CTGCAG 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 196
BsrI ACTGG 3 cut(s) 96, 274, 515
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 271
BstAPI GCANNNNNTGC 2 cut(s) 161, 356
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 122, 239
BstF5I GGATG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 158, 161, 356
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 5 cut(s) 4, 7, 139, 148, 362
BstXI CCANNNNNNTGG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 4 cut(s) 103, 130, 265, 339
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 128, 402
CviAII CATG 2 cut(s) 34, 385
CviJI RGCY 7 cut(s) 93, 110, 161, 218, 230, 285, 320
CviKI_1 RGCY 7 cut(s) 93, 110, 161, 218, 230, 285, 320
CviQI GTAC 2 cut(s) 128, 402
DdeI CTNAG 2 cut(s) 122, 239
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 196
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 181
EcoRV GATATC 1 cut(s) 205
FaeI CATG 2 cut(s) 37, 388
FaiI YATR 8 cut(s) 35, 138, 178, 235, 386, 416, 503, 517
FatI CATG 2 cut(s) 33, 384
Fnu4HI GCNGC 5 cut(s) 18, 21, 153, 162, 351
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 5 cut(s) 18, 21, 153, 162, 351
FspBI CTAG 3 cut(s) 26, 83, 360
GlaI GCGC 1 cut(s) 427
GluI GCNGC 5 cut(s) 18, 21, 153, 162, 351
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 429
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 428
Hin1II CATG 2 cut(s) 37, 388
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HinfI GANTC 2 cut(s) 337, 369
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 3 cut(s) 202, 240, 508
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 441
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 6 cut(s) 37, 155, 164, 299, 350, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 161, 356
HpyF3I CTNAG 2 cut(s) 122, 239
Hsp92II CATG 2 cut(s) 37, 388
HspAI GCGC 1 cut(s) 426
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 3 cut(s) 98, 115, 325
LpnPI CCDG 8 cut(s) 109, 168, 195, 208, 235, 255, 330, 496
Lsp1109I GCAGC 5 cut(s) 4, 7, 139, 148, 362
LweI GCATC 3 cut(s) 58, 139, 308
MaeI CTAG 3 cut(s) 26, 83, 360
MaeIII GTNAC 1 cut(s) 537
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 4 cut(s) 288, 386, 426, 435
MfeI CAATTG 1 cut(s) 12
MluCI AATT 4 cut(s) 12, 327, 462, 531
MlyI GAGTC 1 cut(s) 363
MmeI TCCRAC 2 cut(s) 477, 548
MnlI CCTC 3 cut(s) 123, 239, 242
MseI TTAA 1 cut(s) 547
MslI CAYNNNNRTG 2 cut(s) 212, 383
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 158, 161, 356
NdeII GATC 1 cut(s) 310
NlaIII CATG 2 cut(s) 37, 388
NspI RCATGY 1 cut(s) 37
PaeI GCATGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 5 cut(s) 19, 22, 154, 163, 352
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 166
RsaI GTAC 2 cut(s) 129, 403
RsaNI GTAC 2 cut(s) 128, 402
RseI CAYNNNNRTG 2 cut(s) 212, 383
SaqAI TTAA 1 cut(s) 547
SatI GCNGC 5 cut(s) 18, 21, 153, 162, 351
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 1 cut(s) 183
SetI ASST 6 cut(s) 95, 112, 163, 192, 232, 322
SfaNI GCATC 3 cut(s) 58, 139, 308
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 212, 383
SphI GCATGC 1 cut(s) 37
Sse9I AATT 4 cut(s) 12, 327, 462, 531
SspI AATATT 1 cut(s) 472
SspMI CTAG 3 cut(s) 26, 83, 360
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 168
TaqII GACCGA 1 cut(s) 21
TasI AATT 4 cut(s) 12, 327, 462, 531
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 1 cut(s) 547
Tru9I TTAA 1 cut(s) 547
TscAI CASTG 4 cut(s) 103, 130, 265, 339
TseI GCWGC 5 cut(s) 17, 20, 152, 161, 350
TspRI CASTG 4 cut(s) 103, 130, 265, 339
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 531
XspI CTAG 3 cut(s) 26, 83, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.