Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000893

Physical Location & Seq

Genomic Coordinates Forward (+)

24208071 .. 24209662

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTATCAGAGATCAGACATAGAAACATTGTGAGGCTTCATGGTTTTTGTTTGCACAAGCGTTGTATGTTCTTGGTCTATGAATACAAGGAAGGAGGAAGCTTATATAGTGTTCTAAGCAACGATATTGAAGCTGCAGAATTGGATTGGACCAAGAGAGTACATATCATTGAAGGCCTAGCACATGCATTATCATACATGCATCAAAACTGCACTATACCAATCATTCACCGAAATGTGACAAGCAGCAATATTCTTCTCAACTCTGAGATGATGGGATCTTTATCCGACTTTGGCACAGCCCGACTCTTATATCCTAATTCCTCAAATAGAACAATGTTAGCTGGCACGCCTGGATATGTTGCTCCAGAACTTGCATTCACCATGGCCGTGACTGAGAAATGCGATGTTTATGGTTTTGGAGTGGTGGCCCTAGAAATAATCATGGGAAGACATCCTGGAGAACTGATTTCCTTGATTGCAACATCTTCCTTGATGTCGACAAAGTCACCCTCGGTTTTACAAATTATGCTAAAAGATGTGTTGGATCCACGGCTATCTCCTCCCAGAATTCAACCGGTAGCTTCTAGTGTGGTTATGCTAACCACATTAGCCTTGGCATGCCTACAGTCCAAACCAAAATGTAGGCCAACGATGGAACATGTGTCGAAGGAGCTTCTGAATCGTACTCCTCGATTGTCCAAGCCTCTTCATGAAATTTCCATACAGGAACTTATGAATCAAGAAATTAGTTCAGAAAAGAAAAAAGCAGCTCATGTGCAGTATGTTACAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

265

Amino Acids

29.53

Weight (kDa)

8.71

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 226	3.3e-32	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	1 - 224	8.2e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01100 AT3G01100 AT3G01100 AT3G01100
fragaria_vesca	FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900
malus_domestica	MD09G1055900.v1.1 MD17G1053500.v1.1
prunus_persica	Prupe.2G018200_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1
pyrus_communis	pycom111g04680
rosa_chinensis	RchiOBHm_Chr2g0167091 RchiOBHm_Chr2g0167101 RchiOBHm_Chr4g0405001
rosa_laevigata	RLG00000021696 RLG00000021697
rosa_multiflora	Rmu_co8240269.1_g000001 Rmu_sc0000528.1_g000018 Rmu_sc0007214.1_g000012 Rmu_sc0010966.1_g000019 Rmu_sc0033273.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083720 Rroxscaffold_2G00083730 Rroxscaffold_4G00321490
rosa_rugosa	Rorug02G0528400.1 Rorug05G0232300 Rorug06G0073200
rosa_samantha	Rh2AG595400 Rh2AG595500 Rh2BG606400 Rh2BG606500 Rh2CG577400 Rh2CG577500 Rh2DG618100 Rh2DG618200 Rh4BG121800
rosa_wichuraiana	Rw2G049560 Rw2G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	500
AclWI	GGATC	3 cut(s)	286, 542, 555
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	570, 717
AfaI	GTAC	2 cut(s)	162, 688
AflIII	ACRYGT	1 cut(s)	661
AgeI	ACCGGT	1 cut(s)	577
AgsI	TTSAA	3 cut(s)	131, 173, 575
AjnI	CCWGG	2 cut(s)	352, 457
AluBI	AGCT	6 cut(s)	102, 134, 344, 584, 676, 773
AluI	AGCT	6 cut(s)	102, 134, 344, 584, 676, 773
AlwI	GGATC	3 cut(s)	286, 542, 555
AoxI	GGCC	4 cut(s)	175, 387, 429, 647
ApeKI	GCWGC	3 cut(s)	134, 246, 770
ApoI	RAATTY	2 cut(s)	570, 717
AsiGI	ACCGGT	1 cut(s)	577
AspS9I	GGNCC	2 cut(s)	150, 430
AsuHPI	GGTGA	3 cut(s)	221, 373, 501
AvaII	GGWCC	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	121, 258, 782
BccI	CCATC	2 cut(s)	268, 649
BceAI	ACGGC	2 cut(s)	374, 569
BciT130I	CCWGG	2 cut(s)	354, 459
BfaI	CTAG	3 cut(s)	179, 434, 588
BfmI	CTRYAG	2 cut(s)	135, 626
BisI	GCNGC	3 cut(s)	135, 247, 771
BlsI	GCNGC	3 cut(s)	136, 248, 772
Bme1390I	CCNGG	2 cut(s)	354, 459
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	150, 430
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	354, 459
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	457
BpmI	CTGGAG	2 cut(s)	351, 480
BsaBI	GATNNNNATC	1 cut(s)	283
BsaJI	CCNNGG	4 cut(s)	384, 513, 551, 615
BsaWI	WCCGGW	1 cut(s)	577
Bse118I	RCCGGY	1 cut(s)	577
Bse8I	GATNNNNATC	1 cut(s)	283
BseBI	CCWGG	2 cut(s)	354, 459
BseDI	CCNNGG	4 cut(s)	384, 513, 551, 615
BseGI	GGATG	1 cut(s)	454
BseJI	GATNNNNATC	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	258, 387
BseRI	GAGGAG	2 cut(s)	552, 681
BseXI	GCAGC	3 cut(s)	121, 258, 782
BsgI	GTGCAG	1 cut(s)	196
BshFI	GGCC	4 cut(s)	177, 389, 431, 649
BshTI	ACCGGT	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	4 cut(s)	177, 389, 431, 649
Bsp143I	GATC	3 cut(s)	12, 278, 547
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	4 cut(s)	177, 389, 431, 649
BspCNI	CTCAG	2 cut(s)	259, 388
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	549
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	3 cut(s)	286, 542, 555
BsrFI	RCCGGY	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	577
BssECI	CCNNGG	4 cut(s)	384, 513, 551, 615
BssMI	GATC	3 cut(s)	12, 278, 547
BssT1I	CCWWGG	2 cut(s)	384, 615
Bst2UI	CCWGG	2 cut(s)	354, 459
Bst4CI	ACNGT	1 cut(s)	630
Bst6I	CTCTTC	1 cut(s)	714
BstC8I	GCNNGC	3 cut(s)	346, 350, 622
BstDEI	CTNAG	3 cut(s)	116, 267, 396
BstDSI	CCRYGG	2 cut(s)	384, 551
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	3 cut(s)	15, 281, 550
BstMBI	GATC	3 cut(s)	12, 278, 547
BstNI	CCWGG	2 cut(s)	354, 459
BstNSI	RCATGY	4 cut(s)	188, 202, 624, 665
BstSCI	CCNGG	2 cut(s)	352, 457
BstSFI	CTRYAG	2 cut(s)	135, 626
BstV1I	GCAGC	3 cut(s)	121, 258, 782
BstV2I	GAAGAC	1 cut(s)	457
BstX2I	RGATCY	2 cut(s)	278, 547
BstYI	RGATCY	2 cut(s)	278, 547
BsuRI	GGCC	4 cut(s)	177, 389, 431, 649
BtgI	CCRYGG	2 cut(s)	384, 551
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	346, 350, 622
CciI	TCATGA	1 cut(s)	712
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	150, 430
Csp6I	GTAC	2 cut(s)	161, 687
CspAI	ACCGGT	1 cut(s)	577
CviAII	CATG	9 cut(s)	41, 185, 199, 385, 445, 621, 662, 713, 776
CviQI	GTAC	2 cut(s)	161, 687
DdeI	CTNAG	3 cut(s)	116, 267, 396
DpnI	GATC	3 cut(s)	14, 280, 549
DpnII	GATC	3 cut(s)	12, 278, 547
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Eco130I	CCWWGG	2 cut(s)	384, 615
Eco147I	AGGCCT	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	352, 457
EcoT14I	CCWWGG	2 cut(s)	384, 615
EcoT22I	ATGCAT	2 cut(s)	190, 204
ErhI	CCWWGG	2 cut(s)	384, 615
FaeI	CATG	9 cut(s)	44, 188, 202, 388, 448, 624, 665, 716, 779
FatI	CATG	9 cut(s)	40, 184, 198, 384, 444, 620, 661, 712, 775
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	3 cut(s)	135, 247, 771
FokI	GGATG	1 cut(s)	441
Fsp4HI	GCNGC	3 cut(s)	135, 247, 771
FspBI	CTAG	3 cut(s)	179, 434, 588
GluI	GCNGC	3 cut(s)	135, 247, 771
GsuI	CTGGAG	2 cut(s)	351, 480
HaeIII	GGCC	4 cut(s)	177, 389, 431, 649
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	9 cut(s)	44, 188, 202, 388, 448, 624, 665, 716, 779
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	3 cut(s)	306, 682, 739
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	3 cut(s)	221, 373, 501
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	6 cut(s)	10, 17, 268, 289, 681, 757
Hpy188III	TCNNGA	3 cut(s)	368, 713, 743
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	3 cut(s)	86, 167, 664
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4V	TGCA	8 cut(s)	55, 137, 188, 202, 213, 377, 482, 781
HpyF3I	CTNAG	3 cut(s)	116, 267, 396
Hsp92II	CATG	9 cut(s)	44, 188, 202, 388, 448, 624, 665, 716, 779
Kzo9I	GATC	3 cut(s)	12, 278, 547
LmnI	GCTCC	2 cut(s)	370, 673
LpnPI	CCDG	9 cut(s)	330, 339, 366, 381, 444, 471, 580, 591, 713
Lsp1109I	GCAGC	3 cut(s)	121, 258, 782
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	3 cut(s)	179, 434, 588
MaeIII	GTNAC	4 cut(s)	238, 391, 507, 787
MalI	GATC	3 cut(s)	14, 280, 549
MboI	GATC	3 cut(s)	12, 278, 547
MboII	GAAGA	4 cut(s)	248, 462, 480, 701
MflI	RGATCY	2 cut(s)	278, 547
MluCI	AATT	6 cut(s)	140, 319, 525, 570, 717, 747
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	2 cut(s)	312, 525
MnlI	CCTC	7 cut(s)	27, 89, 334, 523, 573, 702, 717
Mph1103I	ATGCAT	2 cut(s)	190, 204
MslI	CAYNNNNRTG	2 cut(s)	234, 389
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	2 cut(s)	354, 459
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	2 cut(s)	354, 459
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	3 cut(s)	12, 278, 547
NlaIII	CATG	9 cut(s)	44, 188, 202, 388, 448, 624, 665, 716, 779
NlaIV	GGNNCC	1 cut(s)	549
NmuCI	GTSAC	3 cut(s)	238, 391, 507
NsiI	ATGCAT	2 cut(s)	190, 204
NspI	RCATGY	4 cut(s)	188, 202, 624, 665
PaeI	GCATGC	1 cut(s)	624
PagI	TCATGA	1 cut(s)	712
PceI	AGGCCT	1 cut(s)	177
PciI	ACATGT	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	691
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	682, 739
PflFI	GACNNNGTC	1 cut(s)	505
PfoI	TCCNGGA	1 cut(s)	457
PinAI	ACCGGT	1 cut(s)	577
PkrI	GCNGC	3 cut(s)	136, 248, 772
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PscI	ACATGT	1 cut(s)	661
Psp6I	CCWGG	2 cut(s)	352, 457
PspGI	CCWGG	2 cut(s)	352, 457
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	2 cut(s)	150, 430
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	278, 547
PsyI	GACNNNGTC	1 cut(s)	505
RsaI	GTAC	2 cut(s)	162, 688
RsaNI	GTAC	2 cut(s)	161, 687
RseI	CAYNNNNRTG	2 cut(s)	234, 389
SalI	GTCGAC	1 cut(s)	499
SatI	GCNGC	3 cut(s)	135, 247, 771
Sau3AI	GATC	3 cut(s)	12, 278, 547
Sau96I	GGNCC	2 cut(s)	150, 430
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	2 cut(s)	354, 459
SetI	ASST	6 cut(s)	104, 136, 346, 586, 678, 775
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	2 cut(s)	135, 626
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	2 cut(s)	234, 389
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	6 cut(s)	140, 319, 525, 570, 717, 747
SseBI	AGGCCT	1 cut(s)	177
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	3 cut(s)	179, 434, 588
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	352, 457
StyI	CCWWGG	2 cut(s)	384, 615
TaaI	ACNGT	1 cut(s)	630
TaqI	TCGA	3 cut(s)	500, 668, 694
TasI	AATT	6 cut(s)	140, 319, 525, 570, 717, 747
TatI	WGTACW	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	682, 739
TseFI	GTSAC	3 cut(s)	238, 391, 507
TseI	GCWGC	3 cut(s)	134, 246, 770
Tsp45I	GTSAC	3 cut(s)	238, 391, 507
TspDTI	ATGAA	5 cut(s)	29, 96, 701, 729, 752
Tth111I	GACNNNGTC	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	2 cut(s)	570, 717
XceI	RCATGY	4 cut(s)	188, 202, 624, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	500
XspI	CTAG	3 cut(s)	179, 434, 588
Zsp2I	ATGCAT	2 cut(s)	190, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.