Rmu_sc0033273.1_g000001

Cytosolic domain of 10TM putative phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033273.1
OG0000893
Physical Location & Seq
Forward (+)
1 .. 2988
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033273.1_g000001.1.cds

Sequence Viewer

Length: 1178 bp
gccacatggcgggaggcaacggctggaagggcattatcgtcattcgcgcaaagaaagtcggttacttacagaaatccccaaaggtaccaaatacctttcctgctccccaaaacataatattccctttgttgcccctgcccaaagtaggaattaatctgggtctatgtttgctattcttcactctctactctattctgaggaagcaacccagtaacgccaaggtttatgcaccgcgctctgttgctgcaaaaggagcaccaactgaaacaaatggcttcgatttcgatagattgttgcccactgcgggttgggtgaagcgggcatggcagccctctgaagatcagctcttgtctgccaccagtttggatgccgtggtgtttatgcgcattttcatcttcagtttgaaggtgtttgggtttggtgggattattggggtttttgttcttctgccaataaattttctgggcacccagctggacgtggatttttcggatttgcccaacaagtctttggactcgtttagtatttcgaatgtggatgatggctcgaactggttatgggttcatttttgtgcagcatatattttcagtgcagtcgtctgctatcttctttacaatgagtacagttatatctcatcaagaagaattgctcacttctattcatccaaacctcagcctaatcagttcacagtattgagtgatgcagacaaggtatacagaacgcttgcccgtctaaagtcagaaaaggatccacagcaaagattcaagcgtgatgggctttttggacgcaaagtcgatgtgttggatcactatggaaagaaattggatgatttagacgatactgttagattagagcaatcatcgttggcaggaaaggaagtttcagctgcctttgtgtcgttcaagtcccggcttgctgctgcaatagctgtacacattcaacaaggaacaaatcccacagagtgggtcacagagagtgctcctgagcctcaggacgttcattggcccttcttttcttcatcttttataaaaagatgggtcttcaagctggtggtggtggttgcatgtgctgctcttacgattctgttcctcattccagttgcaatcgtgcaaggcctcgctaatcttgcacagttagaaacctggtttccttttctcaaaagcatactgagtttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

391

Amino Acids

43.68

Weight (kDa)

9.32

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1027
Acc16I TGCGCA 1 cut(s) 385
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 2 cut(s) 84, 466
AccB7I CCANNNNNTGG 1 cut(s) 962
AccI GTMKAC 1 cut(s) 713
AccII CGCG 2 cut(s) 47, 234
AciI CCGC 4 cut(s) 10, 232, 304, 318
AclWI GGATC 3 cut(s) 742, 755, 812
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 2 cut(s) 356, 381
AdeI CACNNNGTG 1 cut(s) 962
AfaI GTAC 3 cut(s) 86, 622, 932
AfiI CCNNNNNNNGG 4 cut(s) 9, 145, 304, 962
AgsI TTSAA 5 cut(s) 405, 765, 903, 940, 1044
AhdI GACNNNNNGTC 1 cut(s) 790
AjiI CACGTC 1 cut(s) 480
AjnI CCWGG 1 cut(s) 1141
AluBI AGCT 5 cut(s) 345, 474, 886, 928, 1047
AluI AGCT 5 cut(s) 345, 474, 886, 928, 1047
Alw21I GWGCWC 2 cut(s) 258, 981
AlwI GGATC 3 cut(s) 742, 755, 812
AoxI GGCC 2 cut(s) 1003, 1113
ApeKI GCWGC 7 cut(s) 244, 327, 574, 886, 916, 919, 1069
ApoI RAATTY 1 cut(s) 456
AseI ATTAAT 1 cut(s) 152
Asp718I GGTACC 1 cut(s) 84
AspLEI GCGC 3 cut(s) 49, 236, 386
AspS9I GGNCC 1 cut(s) 1004
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 1 cut(s) 324
AsuII TTCGAA 1 cut(s) 529
AxyI CCTNAGG 1 cut(s) 989
BaeGI GKGCMC 1 cut(s) 469
BamHI GGATCC 1 cut(s) 747
BanI GGYRCC 2 cut(s) 84, 466
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 2 cut(s) 258, 981
BbvCI CCTCAGC 1 cut(s) 671
BbvI GCAGC 7 cut(s) 231, 339, 586, 873, 903, 906, 1056
BccI CCATC 3 cut(s) 535, 766, 1028
BceAI ACGGC 2 cut(s) 36, 355
BciT130I CCWGG 1 cut(s) 1143
BcnI CCSGG 1 cut(s) 909
BisI GCNGC 7 cut(s) 245, 328, 575, 887, 917, 920, 1070
BlsI GCNGC 7 cut(s) 246, 329, 576, 888, 918, 921, 1071
Bme1390I CCNGG 2 cut(s) 909, 1143
BmeRI GACNNNNNGTC 1 cut(s) 790
BmgBI CACGTC 1 cut(s) 480
BmgT120I GGNCC 1 cut(s) 1004
BmiI GGNNCC 3 cut(s) 86, 468, 749
BmrFI CCNGG 2 cut(s) 909, 1143
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 357, 690
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 1032
Bpu10I CCTNAGC 2 cut(s) 671, 983
Bpu14I TTCGAA 1 cut(s) 529
BpuMI CCSGG 1 cut(s) 909
BsaJI CCNNGG 2 cut(s) 218, 371
Bsc4I CCNNNNNNNGG 4 cut(s) 9, 145, 304, 962
Bse1I ACTGG 4 cut(s) 209, 359, 556, 1096
Bse21I CCTNAGG 1 cut(s) 989
BseBI CCWGG 1 cut(s) 1143
BseDI CCNNGG 2 cut(s) 218, 371
BseGI GGATG 4 cut(s) 372, 543, 661, 831
BseLI CCNNNNNNNGG 4 cut(s) 9, 145, 304, 962
BseMII CTCAG 5 cut(s) 187, 685, 974, 1003, 1159
BseNI ACTGG 4 cut(s) 209, 359, 556, 1096
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 7 cut(s) 231, 339, 586, 873, 903, 906, 1056
BseYI CCCAGC 1 cut(s) 470
BsgI GTGCAG 2 cut(s) 593, 611
Bsh1236I CGCG 2 cut(s) 47, 234
BshFI GGCC 2 cut(s) 1005, 1115
BshNI GGYRCC 2 cut(s) 84, 466
BsiHKAI GWGCWC 2 cut(s) 258, 981
BsiSI CCGG 1 cut(s) 909
BslFI GGGAC 1 cut(s) 891
BslI CCNNNNNNNGG 4 cut(s) 9, 145, 304, 962
BsmFI GGGAC 1 cut(s) 891
BsnI GGCC 2 cut(s) 1005, 1115
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 3 cut(s) 258, 469, 981
Bsp1407I TGTACA 1 cut(s) 930
Bsp143I GATC 3 cut(s) 339, 747, 804
BspACI CCGC 4 cut(s) 10, 232, 304, 318
BspANI GGCC 2 cut(s) 1005, 1115
BspCNI CTCAG 5 cut(s) 188, 684, 975, 1002, 1160
BspFNI CGCG 2 cut(s) 47, 234
BspLI GGNNCC 3 cut(s) 86, 468, 749
BspPI GGATC 3 cut(s) 742, 755, 812
BspT104I TTCGAA 1 cut(s) 529
BspT107I GGYRCC 2 cut(s) 84, 466
BsrGI TGTACA 1 cut(s) 930
BsrI ACTGG 4 cut(s) 209, 359, 556, 1096
BssECI CCNNGG 2 cut(s) 218, 371
BssMI GATC 3 cut(s) 339, 747, 804
BssNAI GTATAC 1 cut(s) 714
BssT1I CCWWGG 1 cut(s) 218
Bst1107I GTATAC 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 1143
Bst4CI ACNGT 4 cut(s) 625, 690, 843, 1133
BstAPI GCANNNNNTGC 1 cut(s) 1069
BstAUI TGTACA 1 cut(s) 930
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 3 cut(s) 320, 725, 914
BstDEI CTNAG 5 cut(s) 196, 671, 983, 989, 1168
BstDSI CCRYGG 1 cut(s) 371
BstF5I GGATG 4 cut(s) 372, 543, 661, 831
BstFNI CGCG 2 cut(s) 47, 234
BstHHI GCGC 3 cut(s) 49, 236, 386
BstKTI GATC 3 cut(s) 342, 750, 807
BstMBI GATC 3 cut(s) 339, 747, 804
BstMWI GCNNNNNNNGC 7 cut(s) 29, 253, 324, 774, 925, 1069, 1126
BstNI CCWGG 1 cut(s) 1143
BstNSI RCATGY 1 cut(s) 1067
BstSCI CCNGG 2 cut(s) 907, 1141
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 2 cut(s) 47, 234
BstV1I GCAGC 7 cut(s) 231, 339, 586, 873, 903, 906, 1056
BstV2I GAAGAC 1 cut(s) 1032
BstX2I RGATCY 1 cut(s) 747
BstXI CCANNNNNNTGG 1 cut(s) 363
BstYI RGATCY 1 cut(s) 747
BstZ17I GTATAC 1 cut(s) 714
Bsu36I CCTNAGG 1 cut(s) 989
BsuRI GGCC 2 cut(s) 1005, 1115
BtgI CCRYGG 1 cut(s) 371
BtrI CACGTC 1 cut(s) 480
BtsCI GGATG 4 cut(s) 372, 543, 661, 831
BtsI GCAGTG 1 cut(s) 299
BtsIMutI CAGTG 2 cut(s) 299, 594
Cac8I GCNNGC 3 cut(s) 320, 725, 914
CfoI GCGC 3 cut(s) 49, 236, 386
Cfr13I GGNCC 1 cut(s) 1004
CseI GACGC 1 cut(s) 794
CsiI ACCWGGT 1 cut(s) 1141
Csp6I GTAC 3 cut(s) 85, 621, 931
CviAII CATG 3 cut(s) 6, 323, 1064
CviQI GTAC 3 cut(s) 85, 621, 931
DdeI CTNAG 5 cut(s) 196, 671, 983, 989, 1168
DpnI GATC 3 cut(s) 341, 749, 806
DpnII GATC 3 cut(s) 339, 747, 804
DraIII CACNNNGTG 1 cut(s) 962
DriI GACNNNNNGTC 1 cut(s) 790
Eam1105I GACNNNNNGTC 1 cut(s) 790
Eco130I CCWWGG 1 cut(s) 218
Eco147I AGGCCT 1 cut(s) 1115
Eco57I CTGAAG 2 cut(s) 356, 381
Eco81I CCTNAGG 1 cut(s) 989
EcoRII CCWGG 1 cut(s) 1141
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 9, 326, 1067
FaqI GGGAC 1 cut(s) 891
FatI CATG 3 cut(s) 5, 322, 1063
FauI CCCGC 3 cut(s) 3, 297, 311
FblI GTMKAC 1 cut(s) 713
Fnu4HI GCNGC 7 cut(s) 245, 328, 575, 887, 917, 920, 1070
FokI GGATG 4 cut(s) 379, 550, 648, 838
Fsp4HI GCNGC 7 cut(s) 245, 328, 575, 887, 917, 920, 1070
FspAI RTGCGCAY 1 cut(s) 385
FspI TGCGCA 1 cut(s) 385
GlaI GCGC 3 cut(s) 48, 235, 385
GluI GCNGC 7 cut(s) 245, 328, 575, 887, 917, 920, 1070
GsaI CCCAGC 1 cut(s) 474
HaeIII GGCC 2 cut(s) 1005, 1115
HapII CCGG 1 cut(s) 909
HgaI GACGC 1 cut(s) 794
HhaI GCGC 3 cut(s) 49, 236, 386
Hin1II CATG 3 cut(s) 9, 326, 1067
Hin6I GCGC 3 cut(s) 47, 234, 384
HinP1I GCGC 3 cut(s) 47, 234, 384
HinfI GANTC 3 cut(s) 514, 761, 1080
HpaII CCGG 1 cut(s) 909
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 3 cut(s) 686, 714, 933
Hpy188I TCNGA 4 cut(s) 197, 336, 492, 741
Hpy188III TCNNGA 3 cut(s) 638, 982, 991
Hpy8I GTNNAC 3 cut(s) 686, 714, 933
HpyAV CCTTC 3 cut(s) 21, 399, 1017
HpyCH4III ACNGT 4 cut(s) 625, 690, 843, 1133
HpyCH4IV ACGT 2 cut(s) 479, 995
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 253, 324, 774, 925, 1069, 1126
HpyF3I CTNAG 5 cut(s) 196, 671, 983, 989, 1168
HpySE526I ACGT 2 cut(s) 479, 995
Hsp92II CATG 3 cut(s) 9, 326, 1067
HspAI GCGC 3 cut(s) 47, 234, 384
KpnI GGTACC 1 cut(s) 88
Kzo9I GATC 3 cut(s) 339, 747, 804
LmnI GCTCC 3 cut(s) 108, 253, 984
Lsp1109I GCAGC 7 cut(s) 231, 339, 586, 873, 903, 906, 1056
LweI GCATC 2 cut(s) 357, 690
MabI ACCWGGT 1 cut(s) 1141
MaeII ACGT 2 cut(s) 479, 995
MaeIII GTNAC 3 cut(s) 61, 211, 966
MalI GATC 3 cut(s) 341, 749, 806
MboI GATC 3 cut(s) 339, 747, 804
MboII GAAGA 8 cut(s) 168, 349, 387, 436, 598, 653, 1007, 1032
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 3 cut(s) 258, 469, 981
MluCI AATT 4 cut(s) 149, 456, 644, 820
MlyI GAGTC 1 cut(s) 508
MmeI TCCRAC 1 cut(s) 782
MnlI CCTC 7 cut(s) 7, 191, 342, 680, 998, 1099, 1126
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 569
MspA1I CMGCKG 2 cut(s) 474, 886
MspI CCGG 1 cut(s) 909
MspR9I CCNGG 2 cut(s) 909, 1143
MvaI CCWGG 1 cut(s) 1143
MvnI CGCG 2 cut(s) 47, 234
MwoI GCNNNNNNNGC 7 cut(s) 29, 253, 324, 774, 925, 1069, 1126
NciI CCSGG 1 cut(s) 909
NdeII GATC 3 cut(s) 339, 747, 804
NlaIII CATG 3 cut(s) 9, 326, 1067
NlaIV GGNNCC 3 cut(s) 86, 468, 749
NmuCI GTSAC 1 cut(s) 966
NsbI TGCGCA 1 cut(s) 385
NspI RCATGY 1 cut(s) 1067
NspV TTCGAA 1 cut(s) 529
PceI AGGCCT 1 cut(s) 1115
PfeI GAWTC 2 cut(s) 761, 1080
PflMI CCANNNNNTGG 1 cut(s) 962
PkrI GCNGC 7 cut(s) 246, 329, 576, 888, 918, 921, 1071
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PshBI ATTAAT 1 cut(s) 152
PsiI TTATAA 1 cut(s) 1027
Psp6I CCWGG 1 cut(s) 1141
PspFI CCCAGC 1 cut(s) 470
PspGI CCWGG 1 cut(s) 1141
PspN4I GGNNCC 3 cut(s) 86, 468, 749
PspPI GGNCC 1 cut(s) 1004
PsuI RGATCY 1 cut(s) 747
PvuII CAGCTG 2 cut(s) 474, 886
RsaI GTAC 3 cut(s) 86, 622, 932
RsaNI GTAC 3 cut(s) 85, 621, 931
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 7 cut(s) 245, 328, 575, 887, 917, 920, 1070
Sau3AI GATC 3 cut(s) 339, 747, 804
Sau96I GGNCC 1 cut(s) 1004
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 2 cut(s) 909, 1143
SduI GDGCHC 3 cut(s) 258, 469, 981
SexAI ACCWGGT 1 cut(s) 1141
SfaNI GCATC 2 cut(s) 357, 690
SfuI TTCGAA 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 4 cut(s) 149, 456, 644, 820
SseBI AGGCCT 1 cut(s) 1115
SsiI CCGC 4 cut(s) 10, 232, 304, 318
SspI AATATT 1 cut(s) 119
StuI AGGCCT 1 cut(s) 1115
StyD4I CCNGG 2 cut(s) 907, 1141
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 4 cut(s) 625, 690, 843, 1133
TaiI ACGT 2 cut(s) 482, 998
TaqI TCGA 5 cut(s) 278, 284, 529, 547, 794
TasI AATT 4 cut(s) 149, 456, 644, 820
TatI WGTACW 2 cut(s) 620, 930
TfiI GAWTC 2 cut(s) 761, 1080
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 2 cut(s) 306, 594
TseFI GTSAC 1 cut(s) 966
TseI GCWGC 7 cut(s) 244, 327, 574, 886, 916, 919, 1069
Tsp45I GTSAC 1 cut(s) 966
TspDTI ATGAA 5 cut(s) 381, 553, 650, 988, 1007
TspRI CASTG 2 cut(s) 306, 594
Van91I CCANNNNNTGG 1 cut(s) 962
VspI ATTAAT 1 cut(s) 152
XapI RAATTY 1 cut(s) 456
XceI RCATGY 1 cut(s) 1067
XcmI CCANNNNNNNNNTGG 1 cut(s) 507
XmiI GTMKAC 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.