Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000893

Physical Location & Seq

Genomic Coordinates Reverse (-)

20415393 .. 20420469

Gene Structure 5077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG121800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTGCCCCGTAGCCTCCATGACATCCGGCAGCAACCCACGAGTCAGAGGCCGGCGAGGCCAAGATCTGATTTGGGCACCCATAGGCATAGCTCCCTCCAACCGTCTTCGCCTCCCTCCCCGACCTCAAATCCACCGTCCATTTCCTCACCTCAGTGGGCTTCTCCACCCCCGAGTTCCGCCGCCTAGTCGATTGTTGCCCACTGCGGGTTGGGTGAAACGGGCATGGCAGCCCTCTGAAGATCAGCTCTTGTATGTCACCAGTTTGGATGCCGTGGTGTTTATGCGCATTTTCATCTTCAGTTTGAAGGTGTTTGGGTTTGGTGGGATTATTGGGGTTTTTGTTCTTCTGCCAATAAATTTTCTGGGGACCCAGCTGGAGGTGGATTTTTCGGATTTGCCCAACAAGTCTTTGGACTCGTTTAGTATTTCGAATGTGGATGATGGCTCAAACTGGTATGTATGTGGTTCTTATGGGAGGGTGGTTGAAAATTGTGGGAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

168

Amino Acids

18.68

Weight (kDa)

9.65

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_TM	PF13967	60 - 154	1.5e-19	Late exocytosis, associated with Golgi transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01100 AT3G01100 AT3G01100 AT3G01100
fragaria_vesca	FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900
malus_domestica	MD09G1055900.v1.1 MD17G1053500.v1.1
prunus_persica	Prupe.2G018200_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1
pyrus_communis	pycom111g04680
rosa_chinensis	RchiOBHm_Chr2g0167091 RchiOBHm_Chr2g0167101 RchiOBHm_Chr4g0405001
rosa_laevigata	RLG00000021696 RLG00000021697
rosa_multiflora	Rmu_co8240269.1_g000001 Rmu_sc0000528.1_g000018 Rmu_sc0007214.1_g000012 Rmu_sc0010966.1_g000019 Rmu_sc0033273.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083720 Rroxscaffold_2G00083730 Rroxscaffold_4G00321490
rosa_rugosa	Rorug02G0528400.1 Rorug05G0232300 Rorug06G0073200
rosa_samantha	Rh2AG595400 Rh2AG595500 Rh2BG606400 Rh2BG606500 Rh2CG577400 Rh2CG577500 Rh2DG618100 Rh2DG618200 Rh4BG121800
rosa_wichuraiana	Rw2G049560 Rw2G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	3 cut(s)	179, 182, 206
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	2 cut(s)	258, 283
AfiI	CCNNNNNNNGG	2 cut(s)	206, 379
AgsI	TTSAA	2 cut(s)	307, 488
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	92, 247, 376
AluI	AGCT	3 cut(s)	92, 247, 376
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	2 cut(s)	49, 58
ApeKI	GCWGC	2 cut(s)	30, 229
ApoI	RAATTY	1 cut(s)	358
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	140, 226, 250
AsuII	TTCGAA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	2 cut(s)	8, 79
BanI	GGYRCC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	42, 241
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	186
BglI	GCCNNNNNGGC	1 cut(s)	57
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	31, 182, 230
BlsI	GCNGC	3 cut(s)	32, 183, 231
Bme18I	GGWCC	1 cut(s)	369
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	78, 370, 371
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 379
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	261, 458
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	3 cut(s)	23, 274, 445
BseLI	CCNNNNNNNGG	2 cut(s)	206, 379
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	2 cut(s)	261, 458
BseSI	GKGCMC	2 cut(s)	8, 79
BseXI	GCAGC	2 cut(s)	42, 241
BseYI	CCCAGC	1 cut(s)	372
BshFI	GGCC	2 cut(s)	51, 60
BshNI	GGYRCC	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	27, 52
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	206, 379
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	51, 60
BsoBI	CYCGRG	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	8, 79
Bsp143I	GATC	2 cut(s)	64, 241
BspACI	CCGC	3 cut(s)	179, 182, 206
BspANI	GGCC	2 cut(s)	51, 60
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	78, 370, 371
BspT104I	TTCGAA	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	261, 458
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	64, 241
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	104, 137
BstBI	TTCGAA	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	3 cut(s)	23, 274, 445
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	2 cut(s)	67, 244
BstMBI	GATC	2 cut(s)	64, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstSLI	GKGCMC	2 cut(s)	8, 79
BstV1I	GCAGC	2 cut(s)	42, 241
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	51, 60
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	23, 274, 445
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	160, 201
Cac8I	GCNNGC	1 cut(s)	53
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	369
CviAII	CATG	2 cut(s)	19, 225
CviJI	RGCY	9 cut(s)	14, 51, 60, 92, 160, 232, 247, 376, 447
CviKI_1	RGCY	9 cut(s)	14, 51, 60, 92, 160, 232, 247, 376, 447
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	66, 243
DpnII	GATC	2 cut(s)	64, 241
EciI	GGCGGA	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	258, 283
Eco88I	CYCGRG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	369
FaeI	CATG	2 cut(s)	22, 228
FaiI	YATR	9 cut(s)	20, 83, 89, 226, 255, 284, 459, 463, 474
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	18, 224
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	31, 182, 230
FokI	GGATG	3 cut(s)	10, 281, 452
Fsp4HI	GCNGC	3 cut(s)	31, 182, 230
FspAI	RTGCGCAY	1 cut(s)	287
FspBI	CTAG	1 cut(s)	186
FspI	TGCGCA	1 cut(s)	287
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	3 cut(s)	31, 182, 230
GsaI	CCCAGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	51, 60
HapII	CCGG	2 cut(s)	27, 52
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	22, 228
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	42, 416
HpaII	CCGG	2 cut(s)	27, 52
HphI	GGTGA	3 cut(s)	140, 226, 250
Hpy188I	TCNGA	4 cut(s)	47, 69, 238, 394
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	2 cut(s)	104, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	22, 228
HspAI	GCGC	1 cut(s)	286
KflI	GGGWCCC	1 cut(s)	369
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	64, 241
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	7 cut(s)	40, 65, 274, 350, 362, 386, 439
Lsp1109I	GCAGC	2 cut(s)	42, 241
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	66, 243
MboI	GATC	2 cut(s)	64, 241
MboII	GAAGA	4 cut(s)	98, 251, 289, 338
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	8, 79
MluCI	AATT	2 cut(s)	358, 490
MlyI	GAGTC	2 cut(s)	51, 410
MmeI	TCCRAC	1 cut(s)	123
MroNI	GCCGGC	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	2 cut(s)	27, 52
MwoI	GCNNNNNNNGC	1 cut(s)	57
NaeI	GCCGGC	1 cut(s)	53
NdeII	GATC	2 cut(s)	64, 241
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	22, 228
NlaIV	GGNNCC	3 cut(s)	78, 370, 371
NmuCI	GTSAC	1 cut(s)	256
NsbI	TGCGCA	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	431
OliI	CACNNNNGTG	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	32, 183, 231
PleI	GAGTC	2 cut(s)	50, 410
PpsI	GAGTC	2 cut(s)	50, 410
PpuMI	RGGWCCY	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	372
PspN4I	GGNNCC	3 cut(s)	78, 370, 371
PspPI	GGNCC	1 cut(s)	369
PspPPI	RGGWCCY	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	3 cut(s)	31, 182, 230
Sau3AI	GATC	2 cut(s)	64, 241
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	2 cut(s)	51, 410
SduI	GDGCHC	2 cut(s)	8, 79
SetI	ASST	7 cut(s)	94, 127, 153, 249, 312, 378, 384
SfaNI	GCATC	1 cut(s)	259
SfiI	GGCCNNNNNGGCC	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	431
SinI	GGWCC	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	358, 490
SsiI	CCGC	3 cut(s)	179, 182, 206
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	104, 137
TaqI	TCGA	2 cut(s)	190, 431
TasI	AATT	2 cut(s)	358, 490
TauI	GCSGC	1 cut(s)	184
TscAI	CASTG	2 cut(s)	160, 208
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	30, 229
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	2 cut(s)	160, 208
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.