Rroxscaffold_4G00321490

Cytosolic domain of 10TM putative phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000893
Physical Location & Seq
Forward (+)
51086904 .. 51088920
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321490.1

Sequence Viewer

Length: 606 bp
ATGGAGCTAGTCGTTGGGCATAGTTCTCACAGTGTATTGATGGAAGCAAGCCATGCTTTGGAGAATGCAAAGCACGTCGAGGAGACCGGAAGTGAGAAGTTGGCGGCGACGACATCTACCGCTCGTGTTAGATGGACGGTGGCGACATCCGCCGCGATTGGTTCAGCTCAGTTATGTAATTACAAAATCTGCCAGTTCCCACATATTCTCTCTCAGACTCGCTCTGTGTATGACTCTATACCGTCTCCGGCGTTCATATCTCGACGTCTTGGCCTCGAAAATACCGACCGTCGGCGAGGGAAGCAAGCTGAGGCTCCGCTAGTGCCGGTGAGACCGATTAACCAAAGCCGAGTCCGGTACCTGCGAAGAAGGGAGAGAGGTGATCGCTGCAATTGCAGTTTGAGGGTGTTTTGTTTTGCTGGGATTTATGGGATTTTTGCTCTTTTGCCAATAAATTTTATGGGGAGCCAGCTGGAGGAGGATTTTTTGGATTTGCCCAACAAGTCTTTGGACTCGTTTAGTATTTTGAATGTGGATGATGGCTCAAACTGGTATGTGTTTGGTTCTTACAACATGGTGATTGAAAATGGTGGGAAATGCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

201

Amino Acids

22.45

Weight (kDa)

8.56

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 369
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 58
AccBSI CCGCTC 1 cut(s) 122
AccII CGCG 1 cut(s) 155
AciI CCGC 5 cut(s) 104, 120, 150, 153, 317
AcsI RAATTY 1 cut(s) 454
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 3 cut(s) 58, 291, 475
AgsI TTSAA 2 cut(s) 529, 584
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 4 cut(s) 7, 167, 308, 472
AluI AGCT 4 cut(s) 7, 167, 308, 472
Alw26I GTCTC 3 cut(s) 77, 249, 325
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 387
ApoI RAATTY 1 cut(s) 454
Asp718I GGTACC 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 340, 392, 589
BanI GGYRCC 1 cut(s) 357
BauI CACGAG 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 374
BccI CCATC 3 cut(s) 34, 126, 533
BcoDI GTCTC 3 cut(s) 77, 249, 325
BfaI CTAG 2 cut(s) 8, 320
BfuAI ACCTGC 1 cut(s) 369
BisI GCNGC 3 cut(s) 105, 153, 388
BlsI GCNGC 3 cut(s) 106, 154, 389
BmgBI CACGTC 1 cut(s) 76
BmiI GGNNCC 3 cut(s) 315, 359, 467
BpmI CTGGAG 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 265
BsaI GGTCTC 2 cut(s) 77, 325
BsaWI WCCGGW 2 cut(s) 86, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 291, 475
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 2 cut(s) 193, 554
BseGI GGATG 2 cut(s) 146, 541
BseLI CCNNNNNNNGG 3 cut(s) 58, 291, 475
BseMII CTCAG 3 cut(s) 182, 227, 300
BseNI ACTGG 2 cut(s) 193, 554
BseRI GAGGAG 2 cut(s) 95, 491
BseXI GCAGC 1 cut(s) 374
BseYI CCCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 289
BsiSI CCGG 4 cut(s) 87, 248, 326, 355
BslI CCNNNNNNNGG 3 cut(s) 58, 291, 475
BsmAI GTCTC 3 cut(s) 77, 249, 325
BsmBI CGTCTC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 2 cut(s) 77, 325
Bsp143I GATC 1 cut(s) 382
BspACI CCGC 5 cut(s) 104, 120, 150, 153, 317
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 3 cut(s) 181, 226, 301
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 3 cut(s) 315, 359, 467
BspMI ACCTGC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 357
BspTNI GGTCTC 2 cut(s) 77, 325
BsrBI CCGCTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 2 cut(s) 193, 554
BssAI RCCGGY 1 cut(s) 325
BssMI GATC 1 cut(s) 382
BssNI GRCGYC 1 cut(s) 265
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst4CI ACNGT 4 cut(s) 32, 139, 243, 290
BstACI GRCGYC 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 49, 306, 470
BstDEI CTNAG 3 cut(s) 168, 213, 309
BstF5I GGATG 2 cut(s) 146, 541
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 1 cut(s) 385
BstMAI GTCTC 3 cut(s) 77, 249, 325
BstMBI GATC 1 cut(s) 382
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 4 cut(s) 53, 149, 301, 393
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 374
BsuRI GGCC 1 cut(s) 273
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 146, 541
BtsIMutI CAGTG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 49, 306, 470
Cfr10I RCCGGY 1 cut(s) 325
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 53, 574
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 3 cut(s) 168, 213, 309
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
EciI GGCGGA 1 cut(s) 139
Eco31I GGTCTC 2 cut(s) 77, 325
Esp3I CGTCTC 1 cut(s) 249
FaeI CATG 2 cut(s) 56, 577
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FatI CATG 2 cut(s) 52, 573
Fnu4HI GCNGC 3 cut(s) 105, 153, 388
FokI GGATG 2 cut(s) 133, 548
Fsp4HI GCNGC 3 cut(s) 105, 153, 388
FspBI CTAG 2 cut(s) 8, 320
GluI GCNGC 3 cut(s) 105, 153, 388
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 1 cut(s) 273
HapII CCGG 4 cut(s) 87, 248, 326, 355
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 2 cut(s) 56, 577
HinfI GANTC 4 cut(s) 217, 233, 351, 512
HpaII CCGG 4 cut(s) 87, 248, 326, 355
HphI GGTGA 3 cut(s) 340, 392, 589
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 261
Hpy99I CGWCG 4 cut(s) 80, 112, 267, 294
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 4 cut(s) 32, 139, 243, 290
HpyCH4IV ACGT 2 cut(s) 75, 265
HpyCH4V TGCA 3 cut(s) 68, 390, 396
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 149, 301, 393
HpyF3I CTNAG 3 cut(s) 168, 213, 309
HpySE526I ACGT 2 cut(s) 75, 265
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 2 cut(s) 56, 577
KpnI GGTACC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 382
LmnI GCTCC 3 cut(s) 4, 319, 465
Lsp1109I GCAGC 1 cut(s) 374
MaeI CTAG 2 cut(s) 8, 320
MaeII ACGT 2 cut(s) 75, 265
MalI GATC 1 cut(s) 384
MbiI CCGCTC 1 cut(s) 122
MboI GATC 1 cut(s) 382
MboII GAAGA 1 cut(s) 378
MfeI CAATTG 1 cut(s) 391
MluCI AATT 3 cut(s) 178, 391, 454
MlyI GAGTC 4 cut(s) 211, 227, 360, 506
MnlI CCTC 8 cut(s) 73, 284, 290, 304, 371, 396, 469, 472
MseI TTAA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 4 cut(s) 87, 248, 326, 355
MunI CAATTG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 70
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 53, 149, 301, 393
NdeII GATC 1 cut(s) 382
NlaIII CATG 2 cut(s) 56, 577
NlaIV GGNNCC 3 cut(s) 315, 359, 467
NmeAIII GCCGAG 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 3 cut(s) 106, 154, 389
PleI GAGTC 4 cut(s) 211, 227, 359, 506
PpsI GAGTC 4 cut(s) 211, 227, 359, 506
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 3 cut(s) 315, 359, 467
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 3 cut(s) 105, 153, 388
Sau3AI GATC 1 cut(s) 382
SchI GAGTC 4 cut(s) 211, 227, 360, 506
SetI ASST 8 cut(s) 9, 78, 169, 268, 310, 363, 382, 474
Sse9I AATT 3 cut(s) 178, 391, 454
SsiI CCGC 5 cut(s) 104, 120, 150, 153, 317
SspMI CTAG 2 cut(s) 8, 320
TaaI ACNGT 4 cut(s) 32, 139, 243, 290
TaiI ACGT 2 cut(s) 78, 268
TaqI TCGA 3 cut(s) 78, 262, 276
TaqII GACCGA 1 cut(s) 349
TasI AATT 3 cut(s) 178, 391, 454
TauI GCSGC 2 cut(s) 107, 155
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 387
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 1 cut(s) 37
Van91I CCANNNNNTGG 1 cut(s) 58
XapI RAATTY 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XspI CTAG 2 cut(s) 8, 320
ZraI GACGTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.