RchiOBHm_Chr4g0405001

Cytosolic domain of 10TM putative phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000893
Physical Location & Seq
Forward (+)
25066503 .. 25068036
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37651

Sequence Viewer

Length: 645 bp
ATGCGCATTTTCATCTTCAGTTTGAAGGTGTTTGGGTTTGGTGGGATTATTGGGGTTTTTGTTCTTCTGCCAATAAATTTTCTGGGGACCCAGCTGGAGGTGGATTTTTCGGATTTGCCCAACAAGTCTTTGGACACGTTTAGTATTTCGAATGTGGATGATGGCTCAAACTGGTATAGGTTATGGGTTCATTTTTGTGCAGCATATATTTTCAGTGCAGTCGTCTGCTATCTTCTTTACAATGAGTACAGTTATATCTCATCAAGAAGAATTGCTCACTTCTATTCATCCAAACCTCAGCCTAATCAGTTCACAGTATTGGTTCGTGCAGCTGCAGTGAAACCGTTGAAAAATTCTTTACAGAATATTACTCTTATACTTATCTTTCACACTCATTGGTTCGTCGAACTAGCAAACTCCAACGTCTCACTTTTCTCTCTTATATTATCACCTCAATTTGGTGCTTGCCTACCTAAATTTACTTTTAATGTGCCGACAGAGGAGAAAAAGCTAGTTCTTGTTTCAGATGCTTTGGTCTCCTATTCTTCTCAATACCCATTATTGATTCTTGAATTCTCGACCTGTTGCTGTTCTGGGTTCTTGATCGGATTCGGTTCCAAACAGAAATCGCTTTCTGGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

214

Amino Acids

24.11

Weight (kDa)

8.5

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 1 - 82 8.7e-17 Late exocytosis, associated with Golgi transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AcsI RAATTY 4 cut(s) 76, 352, 476, 572
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 97, 458
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 3 cut(s) 25, 349, 572
AluBI AGCT 3 cut(s) 94, 332, 511
AluI AGCT 3 cut(s) 94, 332, 511
Alw26I GTCTC 2 cut(s) 430, 541
ApeKI GCWGC 3 cut(s) 200, 329, 332
ApoI RAATTY 4 cut(s) 76, 352, 476, 572
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 441
AsuII TTCGAA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 3 cut(s) 212, 319, 341
BccI CCATC 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 430, 541
BfaI CTAG 2 cut(s) 410, 512
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 3 cut(s) 201, 330, 333
BlsI GCNGC 3 cut(s) 202, 331, 334
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 3 cut(s) 88, 89, 616
BmsI GCATC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 541
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 458
Bse1I ACTGG 1 cut(s) 176
BseGI GGATG 2 cut(s) 163, 287
BseLI CCNNNNNNNGG 2 cut(s) 97, 458
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 3 cut(s) 212, 319, 341
BseYI CCCAGC 1 cut(s) 90
BsgI GTGCAG 3 cut(s) 219, 237, 348
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 97, 458
BsmAI GTCTC 2 cut(s) 430, 541
BsmBI CGTCTC 1 cut(s) 430
BsmFI GGGAC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 541
Bsp119I TTCGAA 1 cut(s) 149
Bsp143I GATC 1 cut(s) 603
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 88, 89, 616
BspMAI CTGCAG 1 cut(s) 337
BspT104I TTCGAA 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 541
BsrI ACTGG 1 cut(s) 176
BssMI GATC 1 cut(s) 603
Bst4CI ACNGT 3 cut(s) 251, 316, 345
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 163, 287
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 606
BstMAI GTCTC 2 cut(s) 430, 541
BstMBI GATC 1 cut(s) 603
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 3 cut(s) 212, 319, 341
BtsCI GGATG 2 cut(s) 163, 287
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 220, 342
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 247
CviJI RGCY 5 cut(s) 94, 165, 301, 332, 511
CviKI_1 RGCY 5 cut(s) 94, 165, 301, 332, 511
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 605
DpnII GATC 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 572
Esp3I CGTCTC 1 cut(s) 430
FaiI YATR 7 cut(s) 177, 184, 205, 207, 255, 377, 443
FaqI GGGAC 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 201, 330, 333
FokI GGATG 2 cut(s) 170, 274
Fsp4HI GCNGC 3 cut(s) 201, 330, 333
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 410, 512
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 3 cut(s) 201, 330, 333
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 116
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 2 cut(s) 565, 609
HphI GGTGA 1 cut(s) 441
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 3 cut(s) 112, 526, 608
Hpy188III TCNNGA 4 cut(s) 264, 569, 577, 601
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 3 cut(s) 251, 316, 345
HpyCH4IV ACGT 2 cut(s) 137, 423
HpyCH4V TGCA 4 cut(s) 200, 218, 329, 335
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 2 cut(s) 137, 423
HspAI GCGC 1 cut(s) 4
KflI GGGWCCC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 603
LpnPI CCDG 7 cut(s) 68, 80, 104, 157, 579, 595, 621
Lsp1109I GCAGC 3 cut(s) 212, 319, 341
LweI GCATC 1 cut(s) 517
MaeI CTAG 2 cut(s) 410, 512
MaeII ACGT 2 cut(s) 137, 423
MalI GATC 1 cut(s) 605
MboI GATC 1 cut(s) 603
MboII GAAGA 5 cut(s) 7, 56, 224, 279, 537
MluCI AATT 6 cut(s) 76, 270, 352, 455, 476, 572
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 4 cut(s) 91, 306, 462, 493
MseI TTAA 2 cut(s) 486, 643
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 2 cut(s) 94, 332
NdeII GATC 1 cut(s) 603
NlaIV GGNNCC 3 cut(s) 88, 89, 616
NsbI TGCGCA 1 cut(s) 5
NspV TTCGAA 1 cut(s) 149
PfeI GAWTC 2 cut(s) 565, 609
PkrI GCNGC 3 cut(s) 202, 331, 334
PpuMI RGGWCCY 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 88, 89, 616
PspPI GGNCC 1 cut(s) 87
PspPPI RGGWCCY 1 cut(s) 87
PstI CTGCAG 1 cut(s) 337
PvuII CAGCTG 2 cut(s) 94, 332
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 2 cut(s) 486, 643
SatI GCNGC 3 cut(s) 201, 330, 333
Sau3AI GATC 1 cut(s) 603
Sau96I GGNCC 1 cut(s) 87
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 6 cut(s) 76, 270, 352, 455, 476, 572
SspI AATATT 1 cut(s) 367
SspMI CTAG 2 cut(s) 410, 512
TaaI ACNGT 3 cut(s) 251, 316, 345
TaiI ACGT 2 cut(s) 140, 426
TaqI TCGA 3 cut(s) 149, 405, 578
TasI AATT 6 cut(s) 76, 270, 352, 455, 476, 572
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 2 cut(s) 565, 609
Tru1I TTAA 2 cut(s) 486, 643
Tru9I TTAA 2 cut(s) 486, 643
TscAI CASTG 2 cut(s) 220, 342
TseI GCWGC 3 cut(s) 200, 329, 332
TspDTI ATGAA 2 cut(s) 179, 276
TspRI CASTG 2 cut(s) 220, 342
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 4 cut(s) 76, 352, 476, 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XspI CTAG 2 cut(s) 410, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.