Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000528.1

Orthogroup ID

OG0000893

Physical Location & Seq

Genomic Coordinates Reverse (-)

86040 .. 86612

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000528.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgatcctctctgcgctgttaacctcagtgggaattaatctgggtctatgtttgctattcttcactctctactctattatgaggaagcaacccagtaacactaaggtttatgcaccacgttctgttgttgcaaaaggagcaccagctgaaacaaatggcttcgatttcgatagattgttgcccactgcgggttgggtgaaacgagcatggcagccctctgaagatcagctcttgtctgccacaagtttggatgccgtggtgtttatgcgcattttcatcttcagtttgaaggtgtttgagtttggtgggattattggggtttttgttcttctgccaataaattttctggggacccagctggaggtggatttttcggatttgcccaacaagtctttagactcgtttagtatttcgaatgtggatgatggctcaaactggtatgtatgtggttcttatgggagggtggttgaaaattgtgggaaatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

162

Amino Acids

17.88

Weight (kDa)

5.34

Isoelectric Point (pI)

23.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01100 AT3G01100 AT3G01100 AT3G01100
fragaria_vesca	FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900
malus_domestica	MD09G1055900.v1.1 MD17G1053500.v1.1
prunus_persica	Prupe.2G018200_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1
pyrus_communis	pycom111g04680
rosa_chinensis	RchiOBHm_Chr2g0167091 RchiOBHm_Chr2g0167101 RchiOBHm_Chr4g0405001
rosa_laevigata	RLG00000021696 RLG00000021697
rosa_multiflora	Rmu_co8240269.1_g000001 Rmu_sc0000528.1_g000018 Rmu_sc0007214.1_g000012 Rmu_sc0010966.1_g000019 Rmu_sc0033273.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083720 Rroxscaffold_2G00083730 Rroxscaffold_4G00321490
rosa_rugosa	Rorug02G0528400.1 Rorug05G0232300 Rorug06G0073200
rosa_samantha	Rh2AG595400 Rh2AG595500 Rh2BG606400 Rh2BG606500 Rh2CG577400 Rh2CG577500 Rh2DG618100 Rh2DG618200 Rh4BG121800
rosa_wichuraiana	Rw2G049560 Rw2G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
AciI	CCGC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	2 cut(s)	240, 265
AfiI	CCNNNNNNNGG	2 cut(s)	188, 361
AgsI	TTSAA	2 cut(s)	289, 470
AluBI	AGCT	3 cut(s)	146, 229, 358
AluI	AGCT	3 cut(s)	146, 229, 358
Alw21I	GWGCWC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	340
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	16, 270
AspS9I	GGNCC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	352, 353
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 361
Bse1I	ACTGG	2 cut(s)	93, 440
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	256, 427
BseLI	CCNNNNNNNGG	2 cut(s)	188, 361
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	93, 440
BseXI	GCAGC	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	188, 361
BsmFI	GGGAC	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	3, 223
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	352, 353
BspT104I	TTCGAA	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	93, 440
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	3, 223
BstBI	TTCGAA	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	25, 102
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	256, 427
BstHHI	GCGC	2 cut(s)	16, 270
BstKTI	GATC	2 cut(s)	6, 226
BstMBI	GATC	2 cut(s)	3, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	256, 427
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	33, 183
CfoI	GCGC	2 cut(s)	16, 270
Cfr13I	GGNCC	1 cut(s)	351
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	6 cut(s)	146, 159, 214, 229, 358, 429
CviKI_1	RGCY	6 cut(s)	146, 159, 214, 229, 358, 429
DdeI	CTNAG	2 cut(s)	25, 102
DpnI	GATC	2 cut(s)	5, 225
DpnII	GATC	2 cut(s)	3, 223
Eco47I	GGWCC	1 cut(s)	351
Eco57I	CTGAAG	2 cut(s)	240, 265
EcoO109I	RGGNCCY	1 cut(s)	351
FaeI	CATG	1 cut(s)	210
FaiI	YATR	8 cut(s)	49, 80, 111, 208, 266, 441, 445, 456
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	206
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	2 cut(s)	263, 434
Fsp4HI	GCNGC	1 cut(s)	212
FspAI	RTGCGCAY	1 cut(s)	269
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	2 cut(s)	15, 269
GluI	GCNGC	1 cut(s)	212
GsaI	CCCAGC	1 cut(s)	358
GsuI	CTGGAG	1 cut(s)	380
HhaI	GCGC	2 cut(s)	16, 270
Hin1II	CATG	1 cut(s)	210
Hin6I	GCGC	2 cut(s)	14, 268
HinP1I	GCGC	2 cut(s)	14, 268
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	398
HpaI	GTTAAC	1 cut(s)	21
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	220, 376
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	113, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	25, 102
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	210
HspAI	GCGC	2 cut(s)	14, 268
KflI	GGGWCCC	1 cut(s)	351
KspAI	GTTAAC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	3, 223
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	7 cut(s)	26, 106, 156, 332, 344, 368, 421
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	5, 225
MboI	GATC	2 cut(s)	3, 223
MboII	GAAGA	4 cut(s)	52, 233, 271, 320
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	3 cut(s)	33, 340, 472
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	6 cut(s)	17, 34, 75, 226, 355, 453
MseI	TTAA	2 cut(s)	20, 36
MspA1I	CMGCKG	2 cut(s)	146, 358
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	2 cut(s)	3, 223
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	2 cut(s)	352, 353
NsbI	TGCGCA	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PpuMI	RGGWCCY	1 cut(s)	351
PshBI	ATTAAT	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	351
PspFI	CCCAGC	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	352, 353
PspPI	GGNCC	1 cut(s)	351
PspPPI	RGGWCCY	1 cut(s)	351
PvuII	CAGCTG	2 cut(s)	146, 358
SaqAI	TTAA	2 cut(s)	20, 36
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	2 cut(s)	3, 223
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	8 cut(s)	26, 108, 121, 148, 231, 294, 360, 366
SfaNI	GCATC	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	1 cut(s)	351
Sse9I	AATT	3 cut(s)	33, 340, 472
SsiI	CCGC	1 cut(s)	188
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	162, 168, 413
TasI	AATT	3 cut(s)	33, 340, 472
Tru1I	TTAA	2 cut(s)	20, 36
Tru9I	TTAA	2 cut(s)	20, 36
TscAI	CASTG	2 cut(s)	33, 190
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	265
TspRI	CASTG	2 cut(s)	33, 190
VpaK11BI	GGWCC	1 cut(s)	351
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.